Wall clock time and date at job start Tue Mar 31 2020 15:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.25626 * 2 1 4 4 C 1.52744 * 109.25502 * 119.47743 * 2 1 3 5 5 C 1.53329 * 108.37023 * 69.18080 * 4 2 1 6 6 C 1.52732 * 108.38613 * 69.91570 * 5 4 2 7 7 H 1.09005 * 109.24621 * 69.25831 * 6 5 4 8 8 N 1.46494 * 109.25290 * 188.67982 * 6 5 4 9 9 C 1.34773 * 120.00310 * 205.00233 * 8 6 5 10 10 O 1.21287 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00116 * 180.02562 * 9 8 6 12 12 H 1.08988 * 109.47506 * 320.00192 * 11 9 8 13 13 N 1.46905 * 109.47217 * 199.99930 * 11 9 8 14 14 C 1.52998 * 109.47004 * 80.00596 * 11 9 8 15 15 C 1.53004 * 109.47287 * 185.00036 * 14 11 9 16 16 C 1.50699 * 109.47226 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00318 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99806 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99718 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46681 * 90.00247 * 20 18 16 22 22 H 1.48494 * 109.46927 * 210.00048 * 20 18 16 23 23 H 1.48490 * 109.47318 * 330.00281 * 20 18 16 24 24 C 1.50630 * 110.59524 * 308.97431 * 6 5 4 25 25 C 1.38917 * 117.74765 * 197.45688 * 24 6 5 26 26 C 1.37710 * 120.59626 * 180.21596 * 25 24 6 27 27 C 1.38264 * 119.75565 * 0.03895 * 26 25 24 28 28 C 1.37929 * 119.77042 * 359.86420 * 27 26 25 29 29 C 1.37589 * 122.54960 * 17.50081 * 24 6 5 30 30 H 1.09002 * 109.47153 * 59.99728 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00084 * 3 2 1 34 34 H 1.09002 * 109.47696 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47222 * 300.00400 * 3 2 1 36 36 H 1.09004 * 109.68358 * 188.90260 * 4 2 1 37 37 H 1.09000 * 109.68341 * 309.45464 * 4 2 1 38 38 H 1.08996 * 109.68121 * 189.64726 * 5 4 2 39 39 H 1.09002 * 109.67895 * 310.19633 * 5 4 2 40 40 H 0.97007 * 119.99747 * 25.00150 * 8 6 5 41 41 H 1.00901 * 110.99686 * 300.00664 * 13 11 9 42 42 H 1.00899 * 110.99460 * 63.95208 * 13 11 9 43 43 H 1.09009 * 109.46664 * 304.99378 * 14 11 9 44 44 H 1.09000 * 109.47904 * 64.99481 * 14 11 9 45 45 H 1.09000 * 109.46584 * 299.99584 * 15 14 11 46 46 H 1.08995 * 109.47097 * 59.99429 * 15 14 11 47 47 H 0.97001 * 120.00039 * 179.97438 * 19 18 16 48 48 H 1.07995 * 119.72441 * 0.24352 * 25 24 6 49 49 H 1.08003 * 120.13087 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.11342 * 179.89168 * 27 26 25 51 51 H 1.08002 * 119.73137 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0337 -0.7096 1.2553 5 6 1.7048 -2.2021 1.1316 6 6 2.5942 -2.8029 0.0451 7 1 3.6265 -2.8205 0.3948 8 7 2.1565 -4.1727 -0.2347 9 6 3.0263 -5.0674 -0.7440 10 8 4.1716 -4.7386 -0.9703 11 6 2.5758 -6.4762 -1.0324 12 1 1.9173 -6.8178 -0.2339 13 7 3.7478 -7.3585 -1.1116 14 6 1.8225 -6.5084 -2.3636 15 6 1.2579 -7.9112 -2.5965 16 6 0.5153 -7.9427 -3.9074 17 1 0.4527 -7.0514 -4.5141 18 6 -0.0832 -9.1097 -4.3328 19 7 -0.0064 -10.1952 -3.5943 20 14 -1.0030 -9.1489 -5.9582 21 1 -0.0666 -9.5243 -7.0480 22 1 -2.0998 -10.1470 -5.8823 23 1 -1.5737 -7.8065 -6.2365 24 6 2.5117 -1.9871 -1.2184 25 6 2.9481 -2.5763 -2.3984 26 6 2.9031 -1.8821 -3.5868 27 6 2.4201 -0.5867 -3.6071 28 6 1.9842 0.0000 -2.4374 29 6 2.0267 -0.6997 -1.2380 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6693 1.9568 0.8900 34 1 3.1246 1.4486 0.0005 35 1 1.6692 1.9569 -0.8900 36 1 3.1120 -0.5773 1.3441 37 1 1.5391 -0.2961 2.1342 38 1 1.8979 -2.7005 2.0815 39 1 0.6569 -2.3256 0.8581 40 1 1.2406 -4.4357 -0.0534 41 1 4.3742 -7.0625 -1.8452 42 1 4.2261 -7.4048 -0.2244 43 1 1.0050 -5.7878 -2.3359 44 1 2.5052 -6.2523 -3.1739 45 1 2.0754 -8.6318 -2.6241 46 1 0.5752 -8.1672 -1.7863 47 1 -0.4278 -11.0161 -3.8935 48 1 3.3258 -3.5879 -2.3840 49 1 3.2448 -2.3473 -4.4997 50 1 2.3839 -0.0364 -4.5356 51 1 1.6067 1.0117 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424111075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:09 Heat of formation + Delta-G solvation = -57.061222 kcal Electronic energy + Delta-G solvation = -29179.358591 eV Core-core repulsion = 25462.145554 eV Total energy + Delta-G solvation = -3717.213037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02261 -40.61346 -37.81035 -37.02050 -36.34537 -34.82525 -32.95567 -31.94501 -31.23420 -30.83095 -28.42281 -28.10662 -26.89641 -25.04073 -23.97678 -23.78170 -22.46986 -21.74744 -21.11538 -19.69774 -18.66637 -18.06214 -17.93748 -17.33632 -16.82811 -16.49789 -16.41212 -16.18074 -15.87126 -15.27487 -15.21236 -15.07294 -14.75329 -14.48248 -14.29691 -14.08663 -13.87122 -13.67918 -13.48908 -13.41285 -13.05918 -12.88825 -12.82303 -12.69559 -12.59236 -12.52368 -12.36450 -12.24563 -12.18583 -11.76763 -11.68211 -11.53068 -11.30590 -11.24964 -11.20056 -10.99493 -10.50288 -10.19170 -9.70557 -9.64242 -9.52295 -8.15053 -6.25210 0.38488 0.46185 1.40151 1.41390 1.48150 1.52389 2.16671 2.43396 2.84817 3.17864 3.52815 3.57877 3.62600 3.79860 3.86936 3.90119 4.02394 4.09560 4.18695 4.21738 4.30067 4.35067 4.38737 4.48229 4.59179 4.63670 4.75607 4.78838 4.86142 4.89410 4.92155 4.98215 5.02495 5.08287 5.12384 5.16023 5.17727 5.22969 5.26359 5.36258 5.40917 5.55348 5.55749 5.61105 5.66136 5.74918 5.83059 5.97296 6.08288 6.10553 6.29481 6.43810 6.53033 6.93056 7.13077 7.42776 8.96143 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003104 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.196828 B = 9018.265543 C = 9804.221672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.122 4.122 6 C 0.187 3.813 7 H 0.076 0.924 8 N -0.710 5.710 9 C 0.492 3.508 10 O -0.574 6.574 11 C 0.085 3.915 12 H 0.111 0.889 13 N -0.818 5.818 14 C -0.078 4.078 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.003 3.997 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.146 4.146 27 C -0.121 4.121 28 C -0.127 4.127 29 C -0.060 4.060 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.413 0.587 41 H 0.344 0.656 42 H 0.347 0.653 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.006 0.994 46 H -0.005 1.005 47 H 0.262 0.738 48 H 0.108 0.892 49 H 0.117 0.883 50 H 0.140 0.860 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 25.644 11.647 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.196 4.196 4 C -0.141 4.141 5 C -0.159 4.159 6 C 0.082 3.918 7 H 0.094 0.906 8 N -0.361 5.361 9 C 0.277 3.723 10 O -0.454 6.454 11 C -0.031 4.031 12 H 0.129 0.871 13 N -0.347 5.347 14 C -0.117 4.117 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.105 4.105 25 C -0.150 4.150 26 C -0.164 4.164 27 C -0.139 4.139 28 C -0.144 4.144 29 C -0.061 4.061 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.250 0.750 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.013 0.987 47 H 0.071 0.929 48 H 0.125 0.875 49 H 0.135 0.865 50 H 0.158 0.842 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.110 25.098 11.342 27.623 hybrid contribution 0.078 -0.110 -1.047 1.055 sum 2.188 24.988 10.296 27.114 Atomic orbital electron populations 1.21945 0.92684 1.02072 1.02795 1.19512 0.96334 0.95439 0.91122 1.21953 1.00850 0.93746 1.03068 1.21632 1.01582 0.93244 0.97650 1.21889 0.99814 0.96770 0.97444 1.19781 0.99743 0.79947 0.92297 0.90627 1.46198 1.14851 1.10530 1.64504 1.22307 0.85572 0.89189 0.75184 1.90641 1.20521 1.80712 1.53561 1.21637 0.94679 0.86219 1.00528 0.87133 1.58973 1.11899 1.52707 1.11099 1.21344 0.97599 0.99361 0.93351 1.18807 0.94422 0.91907 0.94455 1.21712 1.33693 0.96297 1.06516 0.92913 1.25878 0.97451 0.95342 1.00801 1.70097 1.45710 1.01498 1.39566 0.85563 0.78308 0.78186 0.79684 1.20153 1.20552 1.18920 1.20040 1.00439 0.95019 0.94979 1.21565 0.99262 1.00580 0.93544 1.21219 1.01293 0.96056 0.97849 1.21360 0.98452 0.94674 0.99436 1.21462 1.00399 1.00825 0.91739 1.19800 0.97475 0.92661 0.96131 0.92603 0.90301 0.93004 0.90530 0.93181 0.91746 0.91827 0.88344 0.89320 0.89818 0.75020 0.84218 0.83962 0.91998 0.94252 0.97560 0.98687 0.92883 0.87456 0.86516 0.84176 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.17 71.98 0.59 -1.08 16 2 C -0.02 -0.33 0.63 -53.04 -0.03 -0.36 16 3 C -0.14 -1.51 7.97 71.98 0.57 -0.94 16 4 C -0.10 -1.27 4.69 30.62 0.14 -1.13 16 5 C -0.12 -1.78 5.38 30.62 0.16 -1.62 16 6 C 0.19 4.21 2.59 44.14 0.11 4.33 16 7 H 0.08 1.99 7.58 -2.38 -0.02 1.97 16 8 N -0.71 -17.31 4.85 -446.63 -2.17 -19.48 16 9 C 0.49 15.11 5.58 87.66 0.49 15.60 16 10 O -0.57 -20.70 13.99 -3.05 -0.04 -20.74 16 11 C 0.09 2.84 3.15 44.17 0.14 2.98 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.82 -27.93 8.44 -171.81 -1.45 -29.38 16 14 C -0.08 -3.22 4.78 30.59 0.15 -3.07 16 15 C 0.04 2.17 4.86 29.85 0.15 2.31 16 16 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 20 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 C -0.10 -2.65 5.55 -19.88 -0.11 -2.76 16 25 C -0.13 -4.08 8.98 22.31 0.20 -3.88 16 26 C -0.15 -4.12 10.04 22.15 0.22 -3.90 16 27 C -0.12 -2.74 10.05 22.20 0.22 -2.52 16 28 C -0.13 -2.52 8.90 22.36 0.20 -2.32 16 29 C -0.06 -1.24 4.70 -19.88 -0.09 -1.34 16 30 H 0.05 0.70 8.06 -2.39 -0.02 0.68 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.73 6.45 -2.38 -0.02 0.71 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.64 6.38 -2.39 -0.02 0.62 16 36 H 0.06 0.87 8.08 -2.38 -0.02 0.85 16 37 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.15 6.26 -2.39 -0.01 1.14 16 40 H 0.41 8.44 8.59 -92.70 -0.80 7.65 16 41 H 0.34 12.13 8.58 -89.69 -0.77 11.36 16 42 H 0.35 10.12 9.06 -89.69 -0.81 9.30 16 43 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 46 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.11 3.88 4.37 -2.91 -0.01 3.86 16 49 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 50 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 51 H 0.15 2.08 6.33 -2.91 -0.02 2.06 16 Total: -1.00 -71.52 394.93 1.03 -70.48 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -1.42 Total: 39.01 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 3.81 Total: -30.16 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.33 Total: -105.54 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.04 Total: -20.74 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.52 1.03 -70.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.422 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds