Wall clock time and date at job start Tue Mar 31 2020 15:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.25626 * 2 1 4 4 C 1.52744 * 109.25502 * 119.47743 * 2 1 3 5 5 C 1.53329 * 108.37023 * 69.18080 * 4 2 1 6 6 C 1.52732 * 108.38613 * 69.91570 * 5 4 2 7 7 H 1.09001 * 109.24806 * 69.22106 * 6 5 4 8 8 N 1.46494 * 109.25290 * 188.67982 * 6 5 4 9 9 C 1.34773 * 120.00310 * 205.00233 * 8 6 5 10 10 O 1.21287 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00116 * 180.02562 * 9 8 6 12 12 H 1.08997 * 109.46955 * 40.00496 * 11 9 8 13 13 N 1.46903 * 109.46806 * 159.99953 * 11 9 8 14 14 C 1.52999 * 109.47142 * 279.99835 * 11 9 8 15 15 C 1.53007 * 109.46930 * 174.99898 * 14 11 9 16 16 C 1.50700 * 109.47077 * 180.02562 * 15 14 11 17 17 H 1.08004 * 119.99881 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47139 * 89.99970 * 20 18 16 22 22 H 1.48501 * 109.47157 * 210.00116 * 20 18 16 23 23 H 1.48503 * 109.46962 * 329.99960 * 20 18 16 24 24 C 1.50630 * 110.59524 * 308.97431 * 6 5 4 25 25 C 1.38917 * 117.74765 * 197.45688 * 24 6 5 26 26 C 1.37710 * 120.59626 * 180.21596 * 25 24 6 27 27 C 1.38264 * 119.75565 * 0.03895 * 26 25 24 28 28 C 1.37929 * 119.77042 * 359.86420 * 27 26 25 29 29 C 1.37589 * 122.54960 * 17.50081 * 24 6 5 30 30 H 1.09002 * 109.47153 * 59.99728 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00084 * 3 2 1 34 34 H 1.09002 * 109.47696 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47222 * 300.00400 * 3 2 1 36 36 H 1.09004 * 109.68358 * 188.90260 * 4 2 1 37 37 H 1.08997 * 109.67871 * 309.42065 * 4 2 1 38 38 H 1.08996 * 109.68121 * 189.64726 * 5 4 2 39 39 H 1.09002 * 109.67895 * 310.19633 * 5 4 2 40 40 H 0.97007 * 119.99747 * 25.00150 * 8 6 5 41 41 H 1.00898 * 111.00132 * 60.00444 * 13 11 9 42 42 H 1.00901 * 110.99818 * 183.95645 * 13 11 9 43 43 H 1.08997 * 109.47128 * 294.99906 * 14 11 9 44 44 H 1.08993 * 109.46830 * 55.00717 * 14 11 9 45 45 H 1.09001 * 109.47375 * 300.00700 * 15 14 11 46 46 H 1.09004 * 109.46701 * 60.00259 * 15 14 11 47 47 H 0.97000 * 120.00695 * 179.97438 * 19 18 16 48 48 H 1.07995 * 119.72441 * 0.24352 * 25 24 6 49 49 H 1.08003 * 120.13087 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.11342 * 179.89168 * 27 26 25 51 51 H 1.08002 * 119.73137 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0337 -0.7096 1.2553 5 6 1.7048 -2.2021 1.1316 6 6 2.5942 -2.8029 0.0451 7 1 3.6266 -2.8199 0.3945 8 7 2.1565 -4.1727 -0.2347 9 6 3.0263 -5.0674 -0.7440 10 8 4.1716 -4.7386 -0.9703 11 6 2.5758 -6.4762 -1.0324 12 1 1.5722 -6.4570 -1.4570 13 7 3.5003 -7.0998 -1.9888 14 6 2.5647 -7.2841 0.2669 15 6 1.9897 -8.6761 -0.0030 16 6 1.9781 -9.4717 1.2768 17 1 2.3438 -9.0286 2.1914 18 6 1.5006 -10.7651 1.2802 19 7 1.4900 -11.4591 2.3972 20 14 0.8673 -11.5311 -0.3015 21 1 1.9853 -12.2095 -1.0051 22 1 -0.1910 -12.5227 0.0179 23 1 0.3042 -10.4700 -1.1745 24 6 2.5117 -1.9871 -1.2184 25 6 2.9481 -2.5763 -2.3984 26 6 2.9031 -1.8821 -3.5868 27 6 2.4201 -0.5867 -3.6071 28 6 1.9842 0.0000 -2.4374 29 6 2.0267 -0.6997 -1.2380 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6693 1.9568 0.8900 34 1 3.1246 1.4486 0.0005 35 1 1.6692 1.9569 -0.8900 36 1 3.1120 -0.5773 1.3441 37 1 1.5395 -0.2957 2.1342 38 1 1.8979 -2.7005 2.0815 39 1 0.6569 -2.3256 0.8581 40 1 1.2406 -4.4357 -0.0534 41 1 4.4382 -7.1295 -1.6182 42 1 3.1844 -8.0224 -2.2479 43 1 3.5827 -7.3785 0.6448 44 1 1.9482 -6.7737 1.0068 45 1 0.9717 -8.5817 -0.3810 46 1 2.6061 -9.1866 -0.7430 47 1 1.1537 -12.3690 2.3997 48 1 3.3258 -3.5879 -2.3840 49 1 3.2448 -2.3473 -4.4997 50 1 2.3839 -0.0364 -4.5356 51 1 1.6067 1.0117 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:14 Heat of formation + Delta-G solvation = -34.202766 kcal Electronic energy + Delta-G solvation = -28924.023846 eV Core-core repulsion = 25207.802026 eV Total energy + Delta-G solvation = -3716.221820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.08022 -39.44323 -37.02103 -35.98440 -35.19162 -32.82861 -32.01917 -30.41414 -30.33496 -29.99571 -27.58940 -27.31598 -25.75134 -23.59323 -23.12418 -22.94177 -20.97238 -20.54650 -19.90954 -18.88660 -17.44090 -17.02225 -16.65098 -16.23571 -15.72030 -15.34445 -14.82588 -14.75151 -14.46423 -14.33849 -14.21959 -14.05905 -13.75806 -13.52480 -13.17530 -13.03211 -12.82141 -12.68279 -12.64955 -12.28801 -12.26740 -12.03033 -11.98308 -11.85128 -11.55385 -11.45591 -11.35122 -11.00431 -10.90397 -10.53937 -10.48150 -10.35293 -10.13043 -9.88379 -9.45223 -9.33110 -9.09367 -8.76624 -8.68954 -8.63603 -8.34067 -6.13108 -4.12759 1.26999 1.37187 2.80799 3.18008 3.23999 3.32359 3.33487 3.74827 4.27936 4.36339 4.36715 4.54725 4.64306 4.70373 4.92923 4.96844 4.99970 5.01566 5.11100 5.18481 5.19940 5.21126 5.31117 5.34712 5.43886 5.45962 5.54084 5.56087 5.58019 5.60304 5.66424 5.72323 5.81056 5.87336 5.93874 5.99974 6.04798 6.12056 6.13409 6.30789 6.42335 6.45507 6.55032 6.63837 6.67684 6.98308 7.07070 7.20223 7.30636 7.60368 7.65337 7.75718 8.36354 8.43128 8.90827 9.48161 11.00120 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002722 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.111923 B =10285.888016 C =11076.465425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.129 4.129 6 C 0.188 3.812 7 H 0.096 0.904 8 N -0.726 5.726 9 C 0.527 3.473 10 O -0.533 6.533 11 C 0.071 3.929 12 H 0.096 0.904 13 N -0.831 5.831 14 C -0.129 4.129 15 C -0.010 4.010 16 C -0.524 4.524 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.090 4.090 25 C -0.104 4.104 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.060 4.060 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.348 0.652 42 H 0.350 0.650 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.018 0.982 46 H 0.011 0.989 47 H 0.264 0.736 48 H 0.138 0.862 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 25.953 -7.310 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.167 4.167 6 C 0.083 3.917 7 H 0.114 0.886 8 N -0.379 5.379 9 C 0.315 3.685 10 O -0.409 6.409 11 C -0.044 4.044 12 H 0.114 0.886 13 N -0.363 5.363 14 C -0.169 4.169 15 C -0.048 4.048 16 C -0.562 4.562 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.092 4.092 25 C -0.122 4.122 26 C -0.145 4.145 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.060 4.060 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.237 0.763 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.074 0.926 48 H 0.156 0.844 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.311 26.603 -7.882 27.777 hybrid contribution -0.654 -1.443 -0.016 1.585 sum -1.965 25.159 -7.898 26.443 Atomic orbital electron populations 1.21945 0.93573 1.02269 1.01813 1.19445 0.95776 0.94940 0.92396 1.21961 1.01349 0.94632 1.01866 1.21605 1.01696 0.94120 0.96958 1.21887 1.00184 0.96067 0.98526 1.19659 1.00108 0.80318 0.91580 0.88603 1.46115 1.14811 1.10386 1.66539 1.20804 0.85437 0.87008 0.75290 1.90647 1.18948 1.79935 1.51357 1.21527 0.97808 0.90454 0.94655 0.88566 1.58741 1.05878 1.27707 1.43926 1.22194 1.02077 0.97811 0.94780 1.19573 0.95633 0.91697 0.97868 1.21064 1.42423 0.97894 0.94805 0.91071 1.25041 0.95160 0.97067 0.96164 1.69905 1.46857 1.10668 1.26499 0.86772 0.79042 0.79341 0.84073 1.20215 1.21328 1.18964 1.19942 0.99800 0.93963 0.95449 1.21680 0.97181 1.01471 0.91826 1.21071 1.00385 0.94869 0.98186 1.21074 0.99385 0.95474 0.97911 1.21097 1.01450 0.99766 0.92223 1.19431 0.98669 0.93378 0.94538 0.92561 0.92242 0.92173 0.92302 0.92397 0.92293 0.91218 0.90762 0.90371 0.90569 0.76282 0.83822 0.83480 0.92048 0.91867 0.96369 0.97061 0.92615 0.84429 0.86335 0.86472 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.17 37.16 0.30 -0.70 16 2 C -0.03 -0.20 0.63 -155.83 -0.10 -0.30 16 3 C -0.14 -0.96 7.97 37.16 0.30 -0.66 16 4 C -0.11 -0.82 4.69 -26.69 -0.13 -0.95 16 5 C -0.13 -1.13 5.38 -26.70 -0.14 -1.27 16 6 C 0.19 2.17 2.59 -69.26 -0.18 1.99 16 7 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 8 N -0.73 -8.91 4.85 -55.10 -0.27 -9.18 16 9 C 0.53 8.04 5.59 -10.99 -0.06 7.98 16 10 O -0.53 -9.55 13.99 5.55 0.08 -9.47 16 11 C 0.07 1.10 3.21 -68.86 -0.22 0.88 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 N -0.83 -13.02 8.94 -5.65 -0.05 -13.07 16 14 C -0.13 -2.36 4.78 -26.73 -0.13 -2.49 16 15 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16 16 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 17 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 20 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 24 C -0.09 -1.10 5.55 -104.64 -0.58 -1.68 16 25 C -0.10 -1.42 8.98 -39.52 -0.36 -1.77 16 26 C -0.13 -1.53 10.04 -39.76 -0.40 -1.93 16 27 C -0.12 -1.25 10.05 -39.68 -0.40 -1.65 16 28 C -0.13 -1.26 8.90 -39.44 -0.35 -1.61 16 29 C -0.06 -0.62 4.70 -104.64 -0.49 -1.11 16 30 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 6.45 -51.93 -0.33 0.13 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.37 6.38 -51.93 -0.33 0.04 16 36 H 0.07 0.57 8.08 -51.93 -0.42 0.16 16 37 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.62 6.26 -51.93 -0.33 0.30 16 40 H 0.40 4.18 8.59 -40.82 -0.35 3.83 16 41 H 0.35 5.58 8.58 -39.29 -0.34 5.24 16 42 H 0.35 5.34 7.55 -39.29 -0.30 5.05 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 46 H 0.01 0.24 6.30 -51.93 -0.33 -0.08 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.14 2.18 4.37 -52.49 -0.23 1.95 16 49 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 50 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 51 H 0.12 0.94 6.33 -52.49 -0.33 0.60 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -31.76 389.38 -10.02 -41.78 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -8.28 Total: 12.80 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.47 Total: -18.55 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.46 Total: -48.74 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.76 -10.02 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.573 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds