Wall clock time and date at job start Tue Mar 31 2020 15:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.25626 * 2 1 4 4 C 1.52744 * 109.25502 * 119.47743 * 2 1 3 5 5 C 1.53329 * 108.37023 * 69.18080 * 4 2 1 6 6 C 1.52732 * 108.38613 * 69.91570 * 5 4 2 7 7 H 1.09001 * 109.24806 * 69.22106 * 6 5 4 8 8 N 1.46494 * 109.25290 * 188.67982 * 6 5 4 9 9 C 1.34773 * 120.00310 * 205.00233 * 8 6 5 10 10 O 1.21287 * 119.99823 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00116 * 180.02562 * 9 8 6 12 12 H 1.08997 * 109.46955 * 40.00496 * 11 9 8 13 13 N 1.46903 * 109.46806 * 159.99953 * 11 9 8 14 14 C 1.52999 * 109.47142 * 279.99835 * 11 9 8 15 15 C 1.53007 * 109.46930 * 174.99898 * 14 11 9 16 16 C 1.50700 * 109.47077 * 180.02562 * 15 14 11 17 17 H 1.08004 * 119.99881 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00147 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00037 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47139 * 89.99970 * 20 18 16 22 22 H 1.48501 * 109.47157 * 210.00116 * 20 18 16 23 23 H 1.48503 * 109.46962 * 329.99960 * 20 18 16 24 24 C 1.50630 * 110.59524 * 308.97431 * 6 5 4 25 25 C 1.38917 * 117.74765 * 197.45688 * 24 6 5 26 26 C 1.37710 * 120.59626 * 180.21596 * 25 24 6 27 27 C 1.38264 * 119.75565 * 0.03895 * 26 25 24 28 28 C 1.37929 * 119.77042 * 359.86420 * 27 26 25 29 29 C 1.37589 * 122.54960 * 17.50081 * 24 6 5 30 30 H 1.09002 * 109.47153 * 59.99728 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47086 * 60.00084 * 3 2 1 34 34 H 1.09002 * 109.47696 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47222 * 300.00400 * 3 2 1 36 36 H 1.09004 * 109.68358 * 188.90260 * 4 2 1 37 37 H 1.08997 * 109.67871 * 309.42065 * 4 2 1 38 38 H 1.08996 * 109.68121 * 189.64726 * 5 4 2 39 39 H 1.09002 * 109.67895 * 310.19633 * 5 4 2 40 40 H 0.97007 * 119.99747 * 25.00150 * 8 6 5 41 41 H 1.00898 * 111.00132 * 60.00444 * 13 11 9 42 42 H 1.00901 * 110.99818 * 183.95645 * 13 11 9 43 43 H 1.08997 * 109.47128 * 294.99906 * 14 11 9 44 44 H 1.08993 * 109.46830 * 55.00717 * 14 11 9 45 45 H 1.09001 * 109.47375 * 300.00700 * 15 14 11 46 46 H 1.09004 * 109.46701 * 60.00259 * 15 14 11 47 47 H 0.97000 * 120.00695 * 179.97438 * 19 18 16 48 48 H 1.07995 * 119.72441 * 0.24352 * 25 24 6 49 49 H 1.08003 * 120.13087 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.11342 * 179.89168 * 27 26 25 51 51 H 1.08002 * 119.73137 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0337 -0.7096 1.2553 5 6 1.7048 -2.2021 1.1316 6 6 2.5942 -2.8029 0.0451 7 1 3.6266 -2.8199 0.3945 8 7 2.1565 -4.1727 -0.2347 9 6 3.0263 -5.0674 -0.7440 10 8 4.1716 -4.7386 -0.9703 11 6 2.5758 -6.4762 -1.0324 12 1 1.5722 -6.4570 -1.4570 13 7 3.5003 -7.0998 -1.9888 14 6 2.5647 -7.2841 0.2669 15 6 1.9897 -8.6761 -0.0030 16 6 1.9781 -9.4717 1.2768 17 1 2.3438 -9.0286 2.1914 18 6 1.5006 -10.7651 1.2802 19 7 1.4900 -11.4591 2.3972 20 14 0.8673 -11.5311 -0.3015 21 1 1.9853 -12.2095 -1.0051 22 1 -0.1910 -12.5227 0.0179 23 1 0.3042 -10.4700 -1.1745 24 6 2.5117 -1.9871 -1.2184 25 6 2.9481 -2.5763 -2.3984 26 6 2.9031 -1.8821 -3.5868 27 6 2.4201 -0.5867 -3.6071 28 6 1.9842 0.0000 -2.4374 29 6 2.0267 -0.6997 -1.2380 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6693 1.9568 0.8900 34 1 3.1246 1.4486 0.0005 35 1 1.6692 1.9569 -0.8900 36 1 3.1120 -0.5773 1.3441 37 1 1.5395 -0.2957 2.1342 38 1 1.8979 -2.7005 2.0815 39 1 0.6569 -2.3256 0.8581 40 1 1.2406 -4.4357 -0.0534 41 1 4.4382 -7.1295 -1.6182 42 1 3.1844 -8.0224 -2.2479 43 1 3.5827 -7.3785 0.6448 44 1 1.9482 -6.7737 1.0068 45 1 0.9717 -8.5817 -0.3810 46 1 2.6061 -9.1866 -0.7430 47 1 1.1537 -12.3690 2.3997 48 1 3.3258 -3.5879 -2.3840 49 1 3.2448 -2.3473 -4.4997 50 1 2.3839 -0.0364 -4.5356 51 1 1.6067 1.0117 -2.4539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424111076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:12 Heat of formation + Delta-G solvation = -54.601600 kcal Electronic energy + Delta-G solvation = -28924.908406 eV Core-core repulsion = 25207.802026 eV Total energy + Delta-G solvation = -3717.106380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97412 -40.53961 -37.78310 -37.30311 -36.32491 -34.82023 -32.95684 -32.08784 -31.20906 -30.79793 -28.67363 -28.09808 -26.92773 -25.04254 -23.94887 -23.75057 -22.26522 -21.74738 -21.16873 -19.65180 -19.10019 -18.34285 -17.86984 -17.23814 -16.52663 -16.31587 -16.14108 -16.02087 -15.84836 -15.57248 -15.19889 -15.02376 -14.73147 -14.64508 -14.47647 -14.42832 -13.93353 -13.71544 -13.52768 -13.47225 -13.07822 -13.02611 -12.87596 -12.69570 -12.63937 -12.55859 -12.32914 -12.19902 -12.03875 -11.92364 -11.67681 -11.54030 -11.41539 -11.27471 -11.19086 -10.79503 -10.75810 -10.15533 -9.67235 -9.64669 -9.51939 -8.30586 -6.36060 0.41754 0.50180 1.37781 1.39009 1.50413 1.58604 2.12520 2.35394 2.88214 3.05076 3.56938 3.61260 3.71988 3.77023 3.86427 3.90733 4.03434 4.09579 4.17160 4.23014 4.26021 4.36312 4.40152 4.50944 4.57163 4.61726 4.65728 4.71829 4.80688 4.87348 4.91284 4.94231 4.98917 5.04386 5.10402 5.15302 5.17512 5.18894 5.28507 5.35061 5.37498 5.43444 5.46516 5.56099 5.61886 5.64459 5.69503 5.79099 6.04771 6.14067 6.24483 6.47339 6.52428 6.72472 7.22047 7.28827 8.86217 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002722 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.111923 B =10285.888016 C =11076.465425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.139 4.139 4 C -0.105 4.105 5 C -0.123 4.123 6 C 0.189 3.811 7 H 0.071 0.929 8 N -0.713 5.713 9 C 0.527 3.473 10 O -0.564 6.564 11 C 0.081 3.919 12 H 0.116 0.884 13 N -0.830 5.830 14 C -0.117 4.117 15 C -0.006 4.006 16 C -0.534 4.534 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.238 1.238 24 C -0.104 4.104 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.059 4.059 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.413 0.587 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.031 0.969 46 H 0.022 0.978 47 H 0.266 0.734 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.142 0.858 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 28.247 -8.982 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 C -0.196 4.196 4 C -0.142 4.142 5 C -0.161 4.161 6 C 0.084 3.916 7 H 0.088 0.912 8 N -0.365 5.365 9 C 0.314 3.686 10 O -0.442 6.442 11 C -0.035 4.035 12 H 0.134 0.866 13 N -0.362 5.362 14 C -0.157 4.157 15 C -0.043 4.043 16 C -0.572 4.572 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.161 1.161 24 C -0.105 4.105 25 C -0.148 4.148 26 C -0.160 4.160 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.060 4.060 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.250 0.750 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.075 0.925 48 H 0.130 0.870 49 H 0.141 0.859 50 H 0.160 0.840 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.246 28.929 -9.554 30.639 hybrid contribution -0.009 -2.083 0.580 2.162 sum -3.255 26.846 -8.975 28.493 Atomic orbital electron populations 1.21934 0.92538 1.02119 1.02797 1.19503 0.96465 0.95377 0.91096 1.21954 1.00811 0.93792 1.03076 1.21634 1.01481 0.93245 0.97887 1.21886 1.00028 0.96774 0.97403 1.19710 0.99465 0.79868 0.92513 0.91153 1.46029 1.14891 1.10480 1.65113 1.20723 0.85275 0.87263 0.75298 1.90635 1.20339 1.80458 1.52815 1.21439 0.98811 0.90193 0.93023 0.86647 1.58750 1.05758 1.27951 1.43695 1.22007 1.00640 0.96584 0.96472 1.19498 0.96736 0.92784 0.95287 1.21437 1.41584 0.98608 0.95587 0.95466 1.26067 0.95505 0.97704 1.00125 1.70073 1.48592 1.11267 1.29391 0.85618 0.78525 0.78826 0.79422 1.19353 1.21365 1.16051 1.19998 1.00672 0.94980 0.94881 1.21604 0.98941 1.00893 0.93342 1.21222 1.01053 0.95880 0.97853 1.21379 0.98367 0.94769 0.99315 1.21448 1.00550 1.00756 0.91732 1.19750 0.97590 0.92638 0.96026 0.92245 0.90639 0.92886 0.90777 0.93291 0.91453 0.92055 0.88667 0.90151 0.89481 0.75029 0.84165 0.83050 0.93975 0.91608 0.95071 0.95929 0.92509 0.87030 0.85939 0.83982 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.17 71.98 0.59 -0.94 16 2 C -0.02 -0.33 0.63 -53.04 -0.03 -0.36 16 3 C -0.14 -1.48 7.97 71.98 0.57 -0.91 16 4 C -0.10 -1.43 4.69 30.62 0.14 -1.28 16 5 C -0.12 -2.01 5.38 30.62 0.16 -1.85 16 6 C 0.19 4.38 2.59 44.14 0.11 4.50 16 7 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 8 N -0.71 -17.45 4.85 -446.64 -2.17 -19.62 16 9 C 0.53 16.26 5.59 87.66 0.49 16.75 16 10 O -0.56 -20.98 13.99 -3.05 -0.04 -21.02 16 11 C 0.08 2.45 3.21 44.17 0.14 2.59 16 12 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 13 N -0.83 -25.46 8.94 -171.80 -1.54 -27.00 16 14 C -0.12 -4.28 4.78 30.60 0.15 -4.14 16 15 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 16 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 17 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 18 C 0.00 0.16 5.47 84.65 0.46 0.62 16 19 N -0.95 -59.21 13.96 21.44 0.30 -58.91 16 20 Si 0.95 42.61 27.47 68.60 1.88 44.49 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 24 C -0.10 -2.51 5.55 -19.88 -0.11 -2.62 16 25 C -0.13 -3.62 8.98 22.31 0.20 -3.42 16 26 C -0.14 -3.40 10.04 22.15 0.22 -3.17 16 27 C -0.12 -2.28 10.05 22.20 0.22 -2.06 16 28 C -0.13 -2.21 8.90 22.36 0.20 -2.01 16 29 C -0.06 -1.14 4.70 -19.88 -0.09 -1.23 16 30 H 0.06 0.64 8.06 -2.39 -0.02 0.62 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.68 6.45 -2.38 -0.02 0.66 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.61 6.38 -2.39 -0.02 0.59 16 36 H 0.06 0.95 8.08 -2.38 -0.02 0.93 16 37 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.25 6.26 -2.39 -0.01 1.23 16 40 H 0.41 8.20 8.59 -92.70 -0.80 7.40 16 41 H 0.35 11.12 8.58 -89.70 -0.77 10.35 16 42 H 0.35 10.25 7.55 -89.69 -0.68 9.57 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 46 H 0.02 0.93 6.30 -2.38 -0.02 0.92 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.11 3.69 4.37 -2.91 -0.01 3.68 16 49 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 50 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 51 H 0.14 1.74 6.33 -2.91 -0.02 1.72 16 Total: -1.00 -71.37 389.38 0.89 -70.47 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -1.34 Total: 40.93 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.79 Total: -29.34 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.40 Total: -105.53 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.04 Total: -21.02 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -71.37 0.89 -70.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.873 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds