Wall clock time and date at job start Tue Mar 31 2020 16:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.52735 * 2 1 4 4 C 1.38236 * 120.00149 * 239.80784 * 3 2 1 5 5 C 1.38228 * 120.00324 * 179.80926 * 4 3 2 6 6 C 1.38243 * 119.99728 * 0.39836 * 5 4 3 7 7 C 1.38232 * 119.99884 * 359.85535 * 6 5 4 8 8 C 1.38234 * 119.99864 * 60.08058 * 3 2 1 9 9 C 1.53045 * 109.49710 * 120.08084 * 2 1 3 10 10 C 1.53039 * 109.53694 * 58.58310 * 9 2 1 11 11 C 1.53196 * 109.33748 * 61.35198 * 10 9 2 12 12 N 1.46931 * 108.77131 * 305.41286 * 11 10 9 13 13 C 1.34775 * 120.60689 * 233.57988 * 12 11 10 14 14 O 1.21283 * 120.00376 * 179.97438 * 13 12 11 15 15 C 1.50706 * 119.99836 * 359.97438 * 13 12 11 16 16 H 1.08999 * 109.47233 * 40.00205 * 15 13 12 17 17 N 1.46897 * 109.47170 * 159.99909 * 15 13 12 18 18 C 1.53006 * 109.47107 * 280.00265 * 15 13 12 19 19 C 1.53000 * 109.47105 * 174.99839 * 18 15 13 20 20 C 1.50696 * 109.46807 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00499 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99566 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00099 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99827 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47126 * 59.99654 * 24 22 20 26 26 H 1.48505 * 109.47206 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.47070 * 299.99886 * 24 22 20 28 28 C 1.46928 * 118.76737 * 53.55408 * 12 11 10 29 29 H 1.08997 * 109.46916 * 299.92228 * 1 2 3 30 30 H 1.09003 * 109.46933 * 59.91747 * 1 2 3 31 31 H 1.08991 * 109.47471 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99623 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00548 * 180.23052 * 5 4 3 34 34 H 1.08004 * 119.99911 * 179.83639 * 6 5 4 35 35 H 1.07997 * 119.99884 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.00356 * 359.97438 * 8 3 2 37 37 H 1.09001 * 109.45732 * 298.56615 * 9 2 1 38 38 H 1.08995 * 109.46248 * 178.60325 * 9 2 1 39 39 H 1.09002 * 109.49756 * 181.31922 * 10 9 2 40 40 H 1.09000 * 109.49883 * 301.38665 * 10 9 2 41 41 H 1.08996 * 109.58760 * 65.17188 * 11 10 9 42 42 H 1.09001 * 109.58519 * 185.59185 * 11 10 9 43 43 H 1.00901 * 111.00361 * 296.05039 * 17 15 13 44 44 H 1.00902 * 110.99554 * 60.00213 * 17 15 13 45 45 H 1.08998 * 109.46921 * 294.99922 * 18 15 13 46 46 H 1.08993 * 109.46755 * 54.99772 * 18 15 13 47 47 H 1.08998 * 109.47298 * 299.99852 * 19 18 15 48 48 H 1.09000 * 109.46769 * 59.99701 * 19 18 15 49 49 H 0.97003 * 120.00106 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58597 * 186.62384 * 28 12 11 51 51 H 1.09001 * 109.69741 * 66.27202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 6 2.8322 1.8706 -1.0347 5 6 3.2910 3.1745 -1.0368 6 6 2.9581 4.0259 0.0002 7 6 2.1640 3.5742 1.0376 8 6 1.7019 2.2713 1.0376 9 6 2.0408 -0.7231 1.2484 10 6 1.5029 -2.1558 1.2661 11 6 2.0133 -2.9045 0.0308 12 7 1.6515 -2.1382 -1.1695 13 6 0.9743 -2.7219 -2.1781 14 8 0.6809 -2.0789 -3.1637 15 6 0.5816 -4.1736 -2.0811 16 1 0.2541 -4.3944 -1.0651 17 7 -0.5148 -4.4480 -3.0194 18 6 1.7845 -5.0519 -2.4313 19 6 1.4232 -6.5225 -2.2127 20 6 2.6079 -7.3874 -2.5582 21 1 3.5264 -6.9338 -2.9000 22 6 2.5186 -8.7582 -2.4390 23 7 1.4000 -9.3107 -2.0233 24 14 3.9872 -9.8304 -2.8667 25 1 5.1346 -9.4685 -1.9961 26 1 3.6365 -11.2578 -2.6546 27 1 4.3583 -9.6174 -4.2888 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.0953 1.2042 -1.8430 33 1 3.9117 3.5273 -1.8471 34 1 3.3188 5.0440 0.0000 35 1 1.9043 4.2392 1.8479 36 1 1.0814 1.9185 1.8481 37 1 1.6987 -0.1958 2.1389 38 1 3.1304 -0.7445 1.2353 39 1 1.8479 -2.6628 2.1672 40 1 0.4131 -2.1354 1.2546 41 1 3.0971 -3.0054 0.0866 42 1 1.5541 -3.8921 -0.0134 43 1 -1.3427 -3.9277 -2.7704 44 1 -0.2359 -4.2511 -3.9689 45 1 2.0566 -4.8959 -3.4752 46 1 2.6267 -4.7858 -1.7927 47 1 1.1512 -6.6785 -1.1688 48 1 0.5809 -6.7884 -2.8513 49 1 1.3371 -10.2750 -1.9398 50 1 1.6007 -0.2732 -2.1389 51 1 3.1272 -0.6442 -1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:37 Heat of formation + Delta-G solvation = -26.268966 kcal Electronic energy + Delta-G solvation = -28968.990664 eV Core-core repulsion = 25253.112879 eV Total energy + Delta-G solvation = -3715.877785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97518 -39.52589 -37.70924 -35.30748 -34.24025 -32.80102 -32.26396 -31.16613 -30.10982 -29.70677 -27.71614 -26.47866 -25.49490 -23.86336 -23.41199 -22.26004 -21.79980 -20.41980 -19.38406 -18.57784 -17.60315 -16.92425 -16.37506 -15.90159 -15.69171 -15.40364 -15.23098 -14.70623 -14.60217 -14.43151 -14.25713 -14.12494 -13.89130 -13.46462 -13.38637 -13.22099 -12.92849 -12.69661 -12.32493 -12.26547 -12.02856 -11.94974 -11.68686 -11.62147 -11.37424 -11.22953 -11.01283 -10.87320 -10.68175 -10.65439 -10.63841 -10.51794 -10.02183 -9.78083 -9.35879 -9.17646 -9.01061 -8.94255 -8.59855 -8.33911 -8.19063 -5.93729 -3.95854 1.09934 1.14362 2.77777 3.03644 3.35948 3.40601 3.43051 3.51951 4.28189 4.34067 4.49905 4.58219 4.72293 4.74642 4.79659 4.83814 4.86675 4.90300 4.99671 5.03029 5.22469 5.27217 5.30467 5.38733 5.41797 5.51590 5.55522 5.57600 5.60587 5.68483 5.72351 5.77183 5.78943 5.82540 5.84812 5.92137 5.96423 6.16649 6.22068 6.25843 6.37805 6.42793 6.52444 6.67183 6.74417 7.08074 7.36488 7.54003 7.75458 7.80511 7.95946 8.13174 8.30076 8.48538 9.11853 9.67208 11.17076 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002493 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.915677 B =11229.258477 C =11416.478335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 C -0.064 4.064 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.104 4.104 10 C -0.138 4.138 11 C 0.100 3.900 12 N -0.608 5.608 13 C 0.486 3.514 14 O -0.555 6.555 15 C 0.077 3.923 16 H 0.098 0.902 17 N -0.807 5.807 18 C -0.096 4.096 19 C 0.033 3.967 20 C -0.522 4.522 21 H 0.051 0.949 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.118 3.882 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.333 0.667 44 H 0.347 0.653 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.012 0.988 48 H 0.035 0.965 49 H 0.260 0.740 50 H 0.092 0.908 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 25.135 9.167 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 C -0.064 4.064 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.145 4.145 7 C -0.137 4.137 8 C -0.132 4.132 9 C -0.142 4.142 10 C -0.176 4.176 11 C -0.023 4.023 12 N -0.341 5.341 13 C 0.274 3.726 14 O -0.433 6.433 15 C -0.038 4.038 16 H 0.116 0.884 17 N -0.335 5.335 18 C -0.134 4.134 19 C -0.004 4.004 20 C -0.561 4.561 21 H 0.069 0.931 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.005 4.005 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.161 0.839 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.031 0.969 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.110 0.890 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.118 24.502 8.909 26.071 hybrid contribution 0.992 0.531 -0.339 1.175 sum 1.110 25.033 8.570 26.482 Atomic orbital electron populations 1.21857 0.93134 1.02395 1.01764 1.19832 0.96440 0.90920 0.96330 1.19736 0.97107 0.94824 0.94750 1.21226 0.97968 0.96150 0.98606 1.21163 0.99907 0.93834 0.98542 1.21144 0.98980 0.99690 0.94724 1.21120 0.98163 0.95825 0.98618 1.20957 1.00287 0.93607 0.98317 1.21598 1.00837 0.95329 0.96413 1.22012 1.01771 0.95611 0.98242 1.21914 1.00979 0.95834 0.83525 1.48183 1.56551 1.10569 1.18800 1.22729 0.76276 0.91735 0.81875 1.90629 1.55632 1.65874 1.31162 1.21871 0.95261 0.87835 0.98839 0.88423 1.59023 1.05284 1.62772 1.06390 1.21677 0.92806 0.98367 1.00579 1.19000 0.97168 0.87021 0.97258 1.21233 0.98813 0.91477 1.44555 0.93076 1.24985 0.95709 0.98139 0.95453 1.69959 1.25474 1.10760 1.46970 0.86722 0.83161 0.79508 0.78945 1.20377 1.21341 1.20328 1.21691 0.99303 0.81465 0.98043 0.92521 0.92600 0.91741 0.85638 0.86105 0.86304 0.86219 0.86163 0.91478 0.91497 0.90219 0.90978 0.90949 0.88305 0.85539 0.83857 0.92892 0.92766 0.96942 0.94697 0.93046 0.88970 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.80 37.16 0.29 -1.04 16 2 C -0.03 -0.33 0.60 -155.54 -0.09 -0.42 16 3 C -0.06 -0.60 4.76 -104.62 -0.50 -1.10 16 4 C -0.12 -1.16 8.99 -39.59 -0.36 -1.52 16 5 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 6 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.11 -0.97 8.70 -39.58 -0.34 -1.31 16 9 C -0.10 -0.89 4.55 -26.69 -0.12 -1.01 16 10 C -0.14 -1.23 5.74 -26.61 -0.15 -1.38 16 11 C 0.10 1.12 5.58 -3.71 -0.02 1.10 16 12 N -0.61 -7.88 2.41 -172.76 -0.42 -8.30 16 13 C 0.49 7.75 6.94 -10.98 -0.08 7.67 16 14 O -0.55 -10.28 15.66 5.56 0.09 -10.19 16 15 C 0.08 1.30 2.30 -68.86 -0.16 1.14 16 16 H 0.10 1.55 6.54 -51.93 -0.34 1.21 16 17 N -0.81 -13.71 8.44 -5.65 -0.05 -13.76 16 18 C -0.10 -1.93 4.55 -26.73 -0.12 -2.05 16 19 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 20 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 24 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.12 1.37 3.78 -3.71 -0.01 1.36 16 29 H 0.06 0.48 7.40 -51.93 -0.38 0.09 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 32 H 0.13 1.17 5.90 -52.48 -0.31 0.86 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.86 7.10 -52.48 -0.37 0.49 16 37 H 0.07 0.50 7.35 -51.93 -0.38 0.12 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.21 5.19 -51.93 -0.27 0.94 16 43 H 0.33 4.93 9.06 -39.29 -0.36 4.57 16 44 H 0.35 6.02 8.58 -39.29 -0.34 5.69 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 1.03 7.20 -51.93 -0.37 0.65 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 50 H 0.09 1.24 6.72 -51.93 -0.35 0.89 16 51 H 0.07 0.74 7.17 -51.93 -0.37 0.37 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -32.12 391.84 -10.40 -42.52 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.23 Total: 8.57 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -3.41 Total: -15.39 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.27 Total: -48.05 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.12 -10.40 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.250 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds