Wall clock time and date at job start Tue Mar 31 2020 16:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.52735 * 2 1 4 4 C 1.38236 * 120.00149 * 239.80784 * 3 2 1 5 5 C 1.38228 * 120.00324 * 179.80926 * 4 3 2 6 6 C 1.38243 * 119.99728 * 0.39836 * 5 4 3 7 7 C 1.38232 * 119.99884 * 359.85535 * 6 5 4 8 8 C 1.38234 * 119.99864 * 60.08058 * 3 2 1 9 9 C 1.53045 * 109.49710 * 120.08084 * 2 1 3 10 10 C 1.53039 * 109.53694 * 58.58310 * 9 2 1 11 11 C 1.53196 * 109.33748 * 61.35198 * 10 9 2 12 12 N 1.46931 * 108.77131 * 305.41286 * 11 10 9 13 13 C 1.34775 * 120.60689 * 233.57988 * 12 11 10 14 14 O 1.21283 * 120.00376 * 179.97438 * 13 12 11 15 15 C 1.50706 * 119.99836 * 359.97438 * 13 12 11 16 16 H 1.08999 * 109.47233 * 40.00205 * 15 13 12 17 17 N 1.46897 * 109.47170 * 159.99909 * 15 13 12 18 18 C 1.53006 * 109.47107 * 280.00265 * 15 13 12 19 19 C 1.53000 * 109.47105 * 174.99839 * 18 15 13 20 20 C 1.50696 * 109.46807 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00499 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99566 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00099 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99827 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47126 * 59.99654 * 24 22 20 26 26 H 1.48505 * 109.47206 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.47070 * 299.99886 * 24 22 20 28 28 C 1.46928 * 118.76737 * 53.55408 * 12 11 10 29 29 H 1.08997 * 109.46916 * 299.92228 * 1 2 3 30 30 H 1.09003 * 109.46933 * 59.91747 * 1 2 3 31 31 H 1.08991 * 109.47471 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99623 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00548 * 180.23052 * 5 4 3 34 34 H 1.08004 * 119.99911 * 179.83639 * 6 5 4 35 35 H 1.07997 * 119.99884 * 179.97438 * 7 6 5 36 36 H 1.08003 * 120.00356 * 359.97438 * 8 3 2 37 37 H 1.09001 * 109.45732 * 298.56615 * 9 2 1 38 38 H 1.08995 * 109.46248 * 178.60325 * 9 2 1 39 39 H 1.09002 * 109.49756 * 181.31922 * 10 9 2 40 40 H 1.09000 * 109.49883 * 301.38665 * 10 9 2 41 41 H 1.08996 * 109.58760 * 65.17188 * 11 10 9 42 42 H 1.09001 * 109.58519 * 185.59185 * 11 10 9 43 43 H 1.00901 * 111.00361 * 296.05039 * 17 15 13 44 44 H 1.00902 * 110.99554 * 60.00213 * 17 15 13 45 45 H 1.08998 * 109.46921 * 294.99922 * 18 15 13 46 46 H 1.08993 * 109.46755 * 54.99772 * 18 15 13 47 47 H 1.08998 * 109.47298 * 299.99852 * 19 18 15 48 48 H 1.09000 * 109.46769 * 59.99701 * 19 18 15 49 49 H 0.97003 * 120.00106 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58597 * 186.62384 * 28 12 11 51 51 H 1.09001 * 109.69741 * 66.27202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 6 2.8322 1.8706 -1.0347 5 6 3.2910 3.1745 -1.0368 6 6 2.9581 4.0259 0.0002 7 6 2.1640 3.5742 1.0376 8 6 1.7019 2.2713 1.0376 9 6 2.0408 -0.7231 1.2484 10 6 1.5029 -2.1558 1.2661 11 6 2.0133 -2.9045 0.0308 12 7 1.6515 -2.1382 -1.1695 13 6 0.9743 -2.7219 -2.1781 14 8 0.6809 -2.0789 -3.1637 15 6 0.5816 -4.1736 -2.0811 16 1 0.2541 -4.3944 -1.0651 17 7 -0.5148 -4.4480 -3.0194 18 6 1.7845 -5.0519 -2.4313 19 6 1.4232 -6.5225 -2.2127 20 6 2.6079 -7.3874 -2.5582 21 1 3.5264 -6.9338 -2.9000 22 6 2.5186 -8.7582 -2.4390 23 7 1.4000 -9.3107 -2.0233 24 14 3.9872 -9.8304 -2.8667 25 1 5.1346 -9.4685 -1.9961 26 1 3.6365 -11.2578 -2.6546 27 1 4.3583 -9.6174 -4.2888 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.0953 1.2042 -1.8430 33 1 3.9117 3.5273 -1.8471 34 1 3.3188 5.0440 0.0000 35 1 1.9043 4.2392 1.8479 36 1 1.0814 1.9185 1.8481 37 1 1.6987 -0.1958 2.1389 38 1 3.1304 -0.7445 1.2353 39 1 1.8479 -2.6628 2.1672 40 1 0.4131 -2.1354 1.2546 41 1 3.0971 -3.0054 0.0866 42 1 1.5541 -3.8921 -0.0134 43 1 -1.3427 -3.9277 -2.7704 44 1 -0.2359 -4.2511 -3.9689 45 1 2.0566 -4.8959 -3.4752 46 1 2.6267 -4.7858 -1.7927 47 1 1.1512 -6.6785 -1.1688 48 1 0.5809 -6.7884 -2.8513 49 1 1.3371 -10.2750 -1.9398 50 1 1.6007 -0.2732 -2.1389 51 1 3.1272 -0.6442 -1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122880.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:36 Heat of formation + Delta-G solvation = -44.569029 kcal Electronic energy + Delta-G solvation = -28969.784215 eV Core-core repulsion = 25253.112879 eV Total energy + Delta-G solvation = -3716.671335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93869 -40.47884 -38.61413 -36.88080 -35.23507 -34.77228 -33.10061 -31.93767 -31.80707 -30.44462 -28.84572 -27.74966 -26.77800 -25.08385 -24.45863 -23.18992 -22.54295 -22.06396 -20.48948 -19.48812 -18.75653 -18.28647 -17.79668 -17.17275 -16.86607 -16.44768 -16.26155 -16.17253 -15.63506 -15.44291 -15.33729 -15.04119 -14.72220 -14.69346 -14.29478 -14.23171 -14.04922 -13.91597 -13.69906 -13.54041 -13.34165 -12.98607 -12.79810 -12.77646 -12.53588 -12.41544 -12.33949 -12.16273 -11.97851 -11.75107 -11.70899 -11.63084 -11.42537 -11.36909 -11.18765 -10.96535 -10.47580 -9.81262 -9.65755 -9.62766 -9.58419 -8.12731 -6.22814 0.46300 0.51457 1.42111 1.44812 1.48292 1.52763 1.93973 2.45219 2.88537 3.20168 3.39916 3.53708 3.61843 3.69955 3.87922 3.98067 4.03046 4.09965 4.15184 4.16352 4.20389 4.29494 4.31779 4.49325 4.54953 4.60442 4.62995 4.69640 4.74942 4.78194 4.83088 4.86992 4.94105 4.98522 5.05670 5.12798 5.15145 5.18371 5.19398 5.24523 5.43897 5.45779 5.57663 5.64101 5.65521 5.71260 5.84809 5.99076 6.07337 6.13307 6.30638 6.32547 6.49133 6.95103 7.05441 7.45017 8.98162 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002493 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.915677 B =11229.258477 C =11416.478335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.025 4.025 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.127 4.127 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.100 4.100 10 C -0.132 4.132 11 C 0.093 3.907 12 N -0.599 5.599 13 C 0.488 3.512 14 O -0.585 6.585 15 C 0.086 3.914 16 H 0.110 0.890 17 N -0.818 5.818 18 C -0.080 4.080 19 C 0.043 3.957 20 C -0.543 4.543 21 H 0.054 0.946 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.958 3.042 25 H -0.265 1.265 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.119 3.881 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.345 0.655 44 H 0.344 0.656 45 H 0.039 0.961 46 H 0.066 0.934 47 H -0.004 1.004 48 H 0.004 0.996 49 H 0.262 0.738 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 26.511 10.956 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 C -0.075 4.075 4 C -0.159 4.159 5 C -0.145 4.145 6 C -0.150 4.150 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.169 4.169 11 C -0.029 4.029 12 N -0.330 5.330 13 C 0.276 3.724 14 O -0.465 6.465 15 C -0.029 4.029 16 H 0.127 0.873 17 N -0.347 5.347 18 C -0.119 4.119 19 C 0.005 3.995 20 C -0.581 4.581 21 H 0.072 0.928 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.783 3.217 25 H -0.190 1.190 26 H -0.209 1.209 27 H -0.198 1.198 28 C -0.004 4.004 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.023 0.977 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.310 25.901 10.733 28.067 hybrid contribution 0.622 0.157 -0.885 1.093 sum 1.932 26.058 9.849 27.924 Atomic orbital electron populations 1.21822 0.93383 1.01728 1.01842 1.19730 0.96081 0.91172 0.95628 1.19748 0.97644 0.94767 0.95333 1.21310 0.98921 0.96802 0.98828 1.21388 1.00121 0.93624 0.99342 1.21457 0.98643 1.00563 0.94342 1.21449 0.97546 0.95936 0.99121 1.21159 1.00377 0.93813 0.98322 1.21591 1.00873 0.94920 0.96346 1.21985 1.01738 0.95723 0.97503 1.22110 1.01492 0.95573 0.83764 1.48201 1.55015 1.11287 1.18531 1.22375 0.76733 0.91185 0.82152 1.90617 1.57127 1.66323 1.32478 1.21651 0.93974 0.88071 0.99243 0.87277 1.59009 1.05969 1.63376 1.06301 1.21390 0.94655 0.95851 0.99989 1.18795 0.95365 0.89992 0.95318 1.21675 0.99668 0.92353 1.44439 0.92772 1.25875 0.98654 0.99698 0.95256 1.70091 1.27616 1.11158 1.47981 0.85622 0.79702 0.77488 0.78930 1.19030 1.20916 1.19766 1.21761 0.99533 0.80521 0.98583 0.90640 0.94304 0.92722 0.86381 0.84958 0.84281 0.83985 0.84663 0.89630 0.91377 0.88291 0.90991 0.90180 0.89351 0.84148 0.84233 0.94256 0.91524 0.98543 0.97719 0.92921 0.91107 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.80 71.98 0.56 -1.89 16 2 C -0.03 -0.45 0.60 -52.85 -0.03 -0.48 16 3 C -0.07 -1.31 4.76 -19.87 -0.09 -1.40 16 4 C -0.14 -2.63 8.99 22.27 0.20 -2.43 16 5 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 6 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 7 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 8 C -0.12 -1.74 8.70 22.27 0.19 -1.55 16 9 C -0.10 -1.45 4.55 30.62 0.14 -1.31 16 10 C -0.13 -2.04 5.74 30.67 0.18 -1.86 16 11 C 0.09 1.96 5.58 86.36 0.48 2.45 16 12 N -0.60 -15.33 2.41 -818.88 -1.97 -17.31 16 13 C 0.49 15.73 6.94 87.66 0.61 16.34 16 14 O -0.58 -22.18 15.66 -3.04 -0.05 -22.23 16 15 C 0.09 2.93 2.30 44.17 0.10 3.03 16 16 H 0.11 3.46 6.54 -2.39 -0.02 3.44 16 17 N -0.82 -28.48 8.44 -171.79 -1.45 -29.93 16 18 C -0.08 -3.28 4.55 30.60 0.14 -3.14 16 19 C 0.04 2.20 4.86 29.85 0.15 2.35 16 20 C -0.54 -30.77 9.11 25.60 0.23 -30.53 16 21 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 22 C 0.00 0.18 5.46 84.66 0.46 0.64 16 23 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 24 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 C 0.12 2.75 3.78 86.36 0.33 3.07 16 29 H 0.07 1.11 7.40 -2.39 -0.02 1.09 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.13 5.97 -2.39 -0.01 1.11 16 32 H 0.12 2.27 5.90 -2.91 -0.02 2.25 16 33 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.14 1.51 7.10 -2.91 -0.02 1.49 16 37 H 0.09 0.98 7.35 -2.39 -0.02 0.97 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.15 6.34 -2.39 -0.02 1.14 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 2.08 5.19 -2.39 -0.01 2.07 16 43 H 0.35 10.39 9.06 -89.69 -0.81 9.58 16 44 H 0.34 12.34 8.58 -89.69 -0.77 11.58 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 46 H 0.07 2.52 7.20 -2.39 -0.02 2.50 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.07 1.97 6.72 -2.39 -0.02 1.95 16 51 H 0.07 1.60 7.17 -2.39 -0.02 1.58 16 Total: -1.00 -69.64 391.84 2.51 -67.13 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.64 Total: 33.58 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.31 Total: -21.54 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.14 Total: -103.30 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.64 2.51 -67.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122880.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.563 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds