Wall clock time and date at job start Tue Mar 31 2020 16:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.49712 * 2 1 4 4 C 1.38238 * 119.99758 * 59.93173 * 3 2 1 5 5 C 1.38234 * 119.99693 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.38234 * 120.00194 * 239.95499 * 3 2 1 9 9 C 1.53042 * 109.52663 * 120.07869 * 2 1 3 10 10 C 1.53044 * 109.53515 * 58.60258 * 9 2 1 11 11 C 1.53188 * 109.30872 * 61.36944 * 10 9 2 12 12 N 1.46931 * 108.77944 * 305.36156 * 11 10 9 13 13 C 1.34770 * 120.62953 * 233.59220 * 12 11 10 14 14 O 1.21290 * 119.99494 * 180.02562 * 13 12 11 15 15 C 1.50693 * 120.00576 * 0.02562 * 13 12 11 16 16 H 1.09001 * 109.46939 * 320.00421 * 15 13 12 17 17 N 1.46904 * 109.47521 * 200.00200 * 15 13 12 18 18 C 1.53008 * 109.47103 * 80.00204 * 15 13 12 19 19 C 1.52999 * 109.47007 * 185.00074 * 18 15 13 20 20 C 1.50700 * 109.46658 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00053 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99946 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99632 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46877 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47205 * 119.99156 * 24 22 20 27 27 H 1.48498 * 109.47485 * 239.99982 * 24 22 20 28 28 C 1.46930 * 118.73255 * 53.60956 * 12 11 10 29 29 H 1.09001 * 109.47025 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47822 * 299.99859 * 1 2 3 32 32 H 1.08005 * 120.00103 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99751 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.00395 * 179.72811 * 7 6 5 36 36 H 1.07999 * 119.99990 * 359.97438 * 8 3 2 37 37 H 1.08999 * 109.46231 * 178.62820 * 9 2 1 38 38 H 1.08999 * 109.45805 * 298.58668 * 9 2 1 39 39 H 1.08994 * 109.50093 * 301.41669 * 10 9 2 40 40 H 1.08997 * 109.52473 * 181.33227 * 10 9 2 41 41 H 1.09005 * 109.58421 * 185.57696 * 11 10 9 42 42 H 1.09001 * 109.70590 * 65.22526 * 11 10 9 43 43 H 1.00902 * 110.99604 * 300.00296 * 17 15 13 44 44 H 1.00901 * 110.99773 * 63.95357 * 17 15 13 45 45 H 1.09001 * 109.46680 * 305.00525 * 18 15 13 46 46 H 1.09000 * 109.46639 * 64.99965 * 18 15 13 47 47 H 1.08996 * 109.47304 * 299.99854 * 19 18 15 48 48 H 1.08999 * 109.46992 * 60.00452 * 19 18 15 49 49 H 0.97001 * 119.99377 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.57936 * 186.60811 * 28 12 11 51 51 H 1.08993 * 109.70142 * 66.25368 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0329 1.4206 0.0000 4 6 1.6981 2.2724 1.0361 5 6 2.1600 3.5753 1.0364 6 6 2.9561 4.0267 0.0003 7 6 3.2859 3.1767 -1.0387 8 6 2.8286 1.8722 -1.0363 9 6 2.0415 -0.7229 1.2482 10 6 1.5043 -2.1559 1.2658 11 6 2.0154 -2.9037 0.0304 12 7 1.6523 -2.1380 -1.1698 13 6 0.9756 -2.7221 -2.1783 14 8 0.6821 -2.0793 -3.1641 15 6 0.5835 -4.1739 -2.0813 16 1 1.3983 -4.7410 -1.6313 17 7 0.3066 -4.6974 -3.4257 18 6 -0.6701 -4.3068 -1.2142 19 6 -0.9962 -5.7880 -1.0127 20 6 -2.2313 -5.9188 -0.1592 21 1 -2.7331 -5.0340 0.2037 22 6 -2.7200 -7.1681 0.1595 23 7 -2.1085 -8.2456 -0.2820 24 14 -4.2512 -7.3303 1.2169 25 1 -4.7464 -5.9785 1.5816 26 1 -5.3023 -8.0548 0.4581 27 1 -3.9222 -8.0863 2.4519 28 6 2.0414 -0.7234 -1.2497 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.0765 1.9196 1.8458 33 1 1.8981 4.2408 1.8456 34 1 3.3165 5.0448 0.0004 35 1 3.9042 3.5306 -1.8504 36 1 3.0902 1.2068 -1.8457 37 1 3.1312 -0.7436 1.2349 38 1 1.6993 -0.1959 2.1388 39 1 0.4146 -2.1362 1.2542 40 1 1.8494 -2.6632 2.1667 41 1 1.5573 -3.8918 -0.0141 42 1 3.0993 -3.0057 0.0848 43 1 -0.4457 -4.1876 -3.8643 44 1 1.1371 -4.6803 -3.9985 45 1 -0.4933 -3.8386 -0.2459 46 1 -1.5076 -3.8143 -1.7084 47 1 -1.1730 -6.2561 -1.9810 48 1 -0.1587 -6.2804 -0.5185 49 1 -2.4525 -9.1244 -0.0581 50 1 1.6003 -0.2729 -2.1389 51 1 3.1272 -0.6432 -1.2998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:40 Heat of formation + Delta-G solvation = -26.767118 kcal Electronic energy + Delta-G solvation = -29227.568105 eV Core-core repulsion = 25511.668719 eV Total energy + Delta-G solvation = -3715.899386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95064 -39.50909 -37.66563 -35.32277 -34.21270 -32.80077 -32.21202 -31.13316 -30.11951 -29.66306 -27.66836 -26.41952 -25.49337 -23.86238 -23.35465 -22.24227 -21.75477 -20.40776 -19.44371 -18.44592 -17.61074 -16.87663 -16.37716 -15.96311 -15.57589 -15.41256 -15.20899 -14.77452 -14.57234 -14.38500 -14.20918 -13.94998 -13.90642 -13.49441 -13.29992 -13.23660 -12.92572 -12.63539 -12.30144 -12.18483 -12.04290 -11.85325 -11.65399 -11.55862 -11.36138 -11.17334 -10.96226 -10.90967 -10.66482 -10.59537 -10.58876 -10.48720 -10.01982 -9.79998 -9.36754 -9.14805 -8.99372 -8.90525 -8.59126 -8.34877 -8.19504 -5.94749 -3.96716 1.13229 1.17196 2.76277 3.05783 3.32938 3.40829 3.44318 3.55147 4.33826 4.39622 4.48939 4.62410 4.75416 4.79929 4.83902 4.85897 4.90686 4.95894 5.03600 5.05312 5.25777 5.32621 5.35932 5.41019 5.44577 5.50638 5.61207 5.63453 5.65494 5.71193 5.79440 5.79800 5.82791 5.86412 5.91103 5.99460 6.05768 6.22390 6.28253 6.32955 6.42074 6.42707 6.54301 6.66288 6.77470 7.07554 7.36563 7.54180 7.75225 7.80556 7.95238 8.12421 8.30065 8.47608 9.11452 9.66547 11.16152 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002860 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.453278 B = 9788.763577 C =10707.971829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 C -0.062 4.062 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.128 4.128 7 C -0.117 4.117 8 C -0.123 4.123 9 C -0.103 4.103 10 C -0.139 4.139 11 C 0.100 3.900 12 N -0.608 5.608 13 C 0.486 3.514 14 O -0.555 6.555 15 C 0.077 3.923 16 H 0.098 0.902 17 N -0.807 5.807 18 C -0.095 4.095 19 C 0.032 3.968 20 C -0.520 4.520 21 H 0.052 0.948 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.887 3.113 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.119 3.881 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.347 0.653 44 H 0.333 0.667 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.012 0.988 49 H 0.259 0.741 50 H 0.092 0.908 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 21.080 2.628 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.063 4.063 4 C -0.131 4.131 5 C -0.137 4.137 6 C -0.146 4.146 7 C -0.135 4.135 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.177 4.177 11 C -0.023 4.023 12 N -0.342 5.342 13 C 0.274 3.726 14 O -0.433 6.433 15 C -0.038 4.038 16 H 0.115 0.885 17 N -0.335 5.335 18 C -0.134 4.134 19 C -0.005 4.005 20 C -0.559 4.559 21 H 0.070 0.930 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.716 3.284 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.004 4.004 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.161 0.839 44 H 0.145 0.855 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.031 0.969 49 H 0.068 0.932 50 H 0.110 0.890 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.137 20.507 2.452 24.477 hybrid contribution -0.483 0.950 0.378 1.131 sum 12.654 21.457 2.830 25.071 Atomic orbital electron populations 1.21884 0.92836 1.02915 1.01774 1.19838 0.96660 0.90796 0.96240 1.19762 0.96929 0.94911 0.94692 1.20985 1.00142 0.93576 0.98401 1.21128 0.98066 0.95835 0.98646 1.21132 0.99066 0.99669 0.94746 1.21144 1.00028 0.93858 0.98498 1.21200 0.98186 0.96115 0.98558 1.21594 1.00500 0.95498 0.96487 1.21996 1.02477 0.95293 0.97940 1.21899 1.00144 0.96308 0.83913 1.48198 1.56547 1.10625 1.18785 1.22734 0.75868 0.92130 0.81889 1.90631 1.55110 1.65914 1.31627 1.21868 1.01318 0.87218 0.93446 0.88470 1.59021 1.11818 1.59510 1.03137 1.21690 0.92793 1.02848 0.96042 1.19012 0.95849 0.87897 0.97766 1.21298 1.11202 0.91942 1.31423 0.92976 1.24988 0.97019 0.96070 0.96248 1.69986 1.40014 0.97588 1.45554 0.86616 0.83515 0.78024 0.80295 1.19861 1.21067 1.21114 1.21682 0.98987 0.81506 0.98230 0.92635 0.91283 0.92464 0.86066 0.86203 0.86336 0.86183 0.85750 0.91730 0.91422 0.90346 0.90205 0.88168 0.91503 0.83869 0.85507 0.92711 0.92912 0.94698 0.96934 0.93164 0.89003 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 7.80 37.15 0.29 -1.30 16 2 C -0.03 -0.35 0.60 -155.54 -0.09 -0.45 16 3 C -0.06 -0.62 4.76 -104.62 -0.50 -1.12 16 4 C -0.11 -1.04 8.70 -39.58 -0.34 -1.38 16 5 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 6 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 7 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 8 C -0.12 -1.18 8.99 -39.58 -0.36 -1.54 16 9 C -0.10 -0.95 4.55 -26.69 -0.12 -1.07 16 10 C -0.14 -1.41 5.74 -26.61 -0.15 -1.56 16 11 C 0.10 1.12 5.76 -3.71 -0.02 1.10 16 12 N -0.61 -7.89 2.41 -172.77 -0.42 -8.30 16 13 C 0.49 7.74 6.94 -10.99 -0.08 7.67 16 14 O -0.55 -10.27 15.66 5.55 0.09 -10.18 16 15 C 0.08 1.29 2.29 -68.86 -0.16 1.14 16 16 H 0.10 1.54 6.80 -51.93 -0.35 1.19 16 17 N -0.81 -13.71 8.44 -5.65 -0.05 -13.76 16 18 C -0.10 -1.89 4.45 -26.73 -0.12 -2.01 16 19 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 20 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 21 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.12 1.39 3.77 -3.71 -0.01 1.37 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.92 5.98 -51.93 -0.31 0.61 16 31 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 32 H 0.12 0.99 7.10 -52.48 -0.37 0.61 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 1.13 5.90 -52.49 -0.31 0.82 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 7.36 -51.93 -0.38 0.19 16 39 H 0.08 0.92 6.34 -51.93 -0.33 0.59 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 1.26 4.84 -51.93 -0.25 1.00 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.35 6.01 8.58 -39.29 -0.34 5.67 16 44 H 0.33 4.94 9.06 -39.29 -0.36 4.58 16 45 H 0.05 1.02 6.97 -51.93 -0.36 0.65 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 50 H 0.09 1.24 6.71 -51.93 -0.35 0.89 16 51 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -31.92 391.59 -10.38 -42.30 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.22 Total: 9.40 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.40 Total: -15.98 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.27 Total: -47.96 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.92 -10.38 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.536 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds