Wall clock time and date at job start Tue Mar 31 2020 16:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.49712 * 2 1 4 4 C 1.38238 * 119.99758 * 59.93173 * 3 2 1 5 5 C 1.38234 * 119.99693 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.02562 * 5 4 3 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.38234 * 120.00194 * 239.95499 * 3 2 1 9 9 C 1.53042 * 109.52663 * 120.07869 * 2 1 3 10 10 C 1.53044 * 109.53515 * 58.60258 * 9 2 1 11 11 C 1.53188 * 109.30872 * 61.36944 * 10 9 2 12 12 N 1.46931 * 108.77944 * 305.36156 * 11 10 9 13 13 C 1.34770 * 120.62953 * 233.59220 * 12 11 10 14 14 O 1.21290 * 119.99494 * 180.02562 * 13 12 11 15 15 C 1.50693 * 120.00576 * 0.02562 * 13 12 11 16 16 H 1.09001 * 109.46939 * 320.00421 * 15 13 12 17 17 N 1.46904 * 109.47521 * 200.00200 * 15 13 12 18 18 C 1.53008 * 109.47103 * 80.00204 * 15 13 12 19 19 C 1.52999 * 109.47007 * 185.00074 * 18 15 13 20 20 C 1.50700 * 109.46658 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00053 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99946 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99632 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46877 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47205 * 119.99156 * 24 22 20 27 27 H 1.48498 * 109.47485 * 239.99982 * 24 22 20 28 28 C 1.46930 * 118.73255 * 53.60956 * 12 11 10 29 29 H 1.09001 * 109.47025 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47822 * 299.99859 * 1 2 3 32 32 H 1.08005 * 120.00103 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99751 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.00395 * 179.72811 * 7 6 5 36 36 H 1.07999 * 119.99990 * 359.97438 * 8 3 2 37 37 H 1.08999 * 109.46231 * 178.62820 * 9 2 1 38 38 H 1.08999 * 109.45805 * 298.58668 * 9 2 1 39 39 H 1.08994 * 109.50093 * 301.41669 * 10 9 2 40 40 H 1.08997 * 109.52473 * 181.33227 * 10 9 2 41 41 H 1.09005 * 109.58421 * 185.57696 * 11 10 9 42 42 H 1.09001 * 109.70590 * 65.22526 * 11 10 9 43 43 H 1.00902 * 110.99604 * 300.00296 * 17 15 13 44 44 H 1.00901 * 110.99773 * 63.95357 * 17 15 13 45 45 H 1.09001 * 109.46680 * 305.00525 * 18 15 13 46 46 H 1.09000 * 109.46639 * 64.99965 * 18 15 13 47 47 H 1.08996 * 109.47304 * 299.99854 * 19 18 15 48 48 H 1.08999 * 109.46992 * 60.00452 * 19 18 15 49 49 H 0.97001 * 119.99377 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.57936 * 186.60811 * 28 12 11 51 51 H 1.08993 * 109.70142 * 66.25368 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0329 1.4206 0.0000 4 6 1.6981 2.2724 1.0361 5 6 2.1600 3.5753 1.0364 6 6 2.9561 4.0267 0.0003 7 6 3.2859 3.1767 -1.0387 8 6 2.8286 1.8722 -1.0363 9 6 2.0415 -0.7229 1.2482 10 6 1.5043 -2.1559 1.2658 11 6 2.0154 -2.9037 0.0304 12 7 1.6523 -2.1380 -1.1698 13 6 0.9756 -2.7221 -2.1783 14 8 0.6821 -2.0793 -3.1641 15 6 0.5835 -4.1739 -2.0813 16 1 1.3983 -4.7410 -1.6313 17 7 0.3066 -4.6974 -3.4257 18 6 -0.6701 -4.3068 -1.2142 19 6 -0.9962 -5.7880 -1.0127 20 6 -2.2313 -5.9188 -0.1592 21 1 -2.7331 -5.0340 0.2037 22 6 -2.7200 -7.1681 0.1595 23 7 -2.1085 -8.2456 -0.2820 24 14 -4.2512 -7.3303 1.2169 25 1 -4.7464 -5.9785 1.5816 26 1 -5.3023 -8.0548 0.4581 27 1 -3.9222 -8.0863 2.4519 28 6 2.0414 -0.7234 -1.2497 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.0765 1.9196 1.8458 33 1 1.8981 4.2408 1.8456 34 1 3.3165 5.0448 0.0004 35 1 3.9042 3.5306 -1.8504 36 1 3.0902 1.2068 -1.8457 37 1 3.1312 -0.7436 1.2349 38 1 1.6993 -0.1959 2.1388 39 1 0.4146 -2.1362 1.2542 40 1 1.8494 -2.6632 2.1667 41 1 1.5573 -3.8918 -0.0141 42 1 3.0993 -3.0057 0.0848 43 1 -0.4457 -4.1876 -3.8643 44 1 1.1371 -4.6803 -3.9985 45 1 -0.4933 -3.8386 -0.2459 46 1 -1.5076 -3.8143 -1.7084 47 1 -1.1730 -6.2561 -1.9810 48 1 -0.1587 -6.2804 -0.5185 49 1 -2.4525 -9.1244 -0.0581 50 1 1.6003 -0.2729 -2.1389 51 1 3.1272 -0.6432 -1.2998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:39 Heat of formation + Delta-G solvation = -44.919280 kcal Electronic energy + Delta-G solvation = -29228.355242 eV Core-core repulsion = 25511.668719 eV Total energy + Delta-G solvation = -3716.686523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.94333 -40.47141 -38.59821 -36.89131 -35.23093 -34.76875 -33.08688 -31.93745 -31.80670 -30.43614 -28.87489 -27.70858 -26.78966 -25.08597 -24.45710 -23.16435 -22.52458 -22.09547 -20.51635 -19.41291 -18.78030 -18.30116 -17.72300 -17.22456 -16.88444 -16.42583 -16.33756 -16.07387 -15.75116 -15.45045 -15.16272 -15.03631 -14.77166 -14.66501 -14.36026 -14.24070 -14.04208 -13.82070 -13.77408 -13.46546 -13.37435 -12.98577 -12.82012 -12.79367 -12.51710 -12.41181 -12.28920 -12.16047 -11.97251 -11.76855 -11.69294 -11.64178 -11.42088 -11.37021 -11.17006 -10.95227 -10.48447 -9.80657 -9.64967 -9.62411 -9.58057 -8.12887 -6.22628 0.46745 0.51991 1.41478 1.42716 1.47664 1.55058 1.96064 2.45099 2.88945 3.20385 3.40563 3.54870 3.60999 3.71688 3.88282 4.01842 4.04055 4.10719 4.14199 4.16820 4.20827 4.29803 4.32277 4.49940 4.55267 4.60252 4.62759 4.69178 4.72628 4.76275 4.83461 4.87542 4.93605 4.98714 5.07219 5.11953 5.15153 5.18483 5.20995 5.26850 5.45744 5.46546 5.58455 5.64868 5.65826 5.72037 5.84973 5.99391 6.07682 6.13719 6.30964 6.32833 6.49573 6.95676 7.05917 7.45351 8.98494 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017296 B = 0.002860 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.453278 B = 9788.763577 C =10707.971829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 C -0.074 4.074 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.125 4.125 8 C -0.138 4.138 9 C -0.097 4.097 10 C -0.136 4.136 11 C 0.094 3.906 12 N -0.599 5.599 13 C 0.488 3.512 14 O -0.584 6.584 15 C 0.085 3.915 16 H 0.109 0.891 17 N -0.818 5.818 18 C -0.078 4.078 19 C 0.042 3.958 20 C -0.539 4.539 21 H 0.054 0.946 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.957 3.043 25 H -0.264 1.264 26 H -0.282 1.282 27 H -0.276 1.276 28 C 0.120 3.880 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.344 0.656 44 H 0.346 0.654 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.004 0.996 48 H -0.004 1.004 49 H 0.262 0.738 50 H 0.070 0.930 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.319 22.828 4.506 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 C -0.074 4.074 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.135 4.135 10 C -0.174 4.174 11 C -0.028 4.028 12 N -0.331 5.331 13 C 0.276 3.724 14 O -0.465 6.465 15 C -0.031 4.031 16 H 0.126 0.874 17 N -0.347 5.347 18 C -0.117 4.117 19 C 0.005 3.995 20 C -0.577 4.577 21 H 0.072 0.928 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.782 3.218 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.202 1.202 28 C -0.002 4.002 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.056 0.944 47 H 0.022 0.978 48 H 0.014 0.986 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.979 22.274 4.358 26.656 hybrid contribution -0.695 0.447 -0.214 0.854 sum 13.284 22.721 4.144 26.644 Atomic orbital electron populations 1.21838 0.94110 1.01484 1.01609 1.19726 0.95475 0.91434 0.96011 1.19731 0.97688 0.94618 0.95402 1.21152 1.00373 0.93971 0.98446 1.21432 0.97632 0.95820 0.99257 1.21456 0.98580 1.00626 0.94309 1.21401 1.00096 0.93559 0.99244 1.21312 0.98780 0.96834 0.98629 1.21570 1.01077 0.94597 0.96209 1.21985 1.01393 0.96082 0.97977 1.22094 1.01654 0.95510 0.83507 1.48210 1.55119 1.11352 1.18409 1.22369 0.76327 0.91479 0.82265 1.90619 1.56648 1.66252 1.32996 1.21657 1.00053 0.88462 0.92893 0.87358 1.59008 1.12505 1.59693 1.03500 1.21387 0.93846 0.99122 0.97303 1.18802 0.94515 0.90789 0.95396 1.21714 1.12126 0.92195 1.31670 0.92760 1.25869 1.00295 0.95747 0.97589 1.70112 1.41779 0.98153 1.46896 0.85522 0.79346 0.78367 0.78542 1.18839 1.20842 1.20198 1.21766 0.99831 0.80404 0.98240 0.94333 0.93254 0.91070 0.85186 0.84196 0.84220 0.84639 0.85915 0.90583 0.90191 0.92120 0.88372 0.89596 0.88928 0.84248 0.84109 0.91425 0.94394 0.97783 0.98569 0.92960 0.91148 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 7.80 71.98 0.56 -2.51 16 2 C -0.03 -0.50 0.60 -52.85 -0.03 -0.53 16 3 C -0.07 -1.36 4.76 -19.86 -0.09 -1.46 16 4 C -0.12 -1.98 8.70 22.27 0.19 -1.79 16 5 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 6 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 7 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 8 C -0.14 -2.50 8.99 22.27 0.20 -2.30 16 9 C -0.10 -1.57 4.55 30.62 0.14 -1.43 16 10 C -0.14 -2.52 5.74 30.67 0.18 -2.35 16 11 C 0.09 1.98 5.76 86.36 0.50 2.47 16 12 N -0.60 -15.19 2.41 -818.90 -1.97 -17.17 16 13 C 0.49 15.68 6.94 87.66 0.61 16.29 16 14 O -0.58 -22.09 15.66 -3.06 -0.05 -22.13 16 15 C 0.08 2.89 2.29 44.17 0.10 2.99 16 16 H 0.11 3.44 6.80 -2.39 -0.02 3.42 16 17 N -0.82 -28.51 8.44 -171.79 -1.45 -29.96 16 18 C -0.08 -3.17 4.45 30.60 0.14 -3.04 16 19 C 0.04 2.18 4.86 29.85 0.15 2.32 16 20 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 21 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 22 C 0.00 0.16 5.46 84.65 0.46 0.62 16 23 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 24 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 C 0.12 2.72 3.77 86.36 0.33 3.05 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.32 5.98 -2.39 -0.01 1.31 16 31 H 0.07 1.40 7.39 -2.39 -0.02 1.38 16 32 H 0.13 1.81 7.10 -2.91 -0.02 1.79 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.12 2.17 5.90 -2.91 -0.02 2.15 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.14 7.36 -2.39 -0.02 1.12 16 39 H 0.06 1.36 6.34 -2.39 -0.02 1.34 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 2.08 4.84 -2.38 -0.01 2.07 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.34 12.34 8.58 -89.69 -0.77 11.57 16 44 H 0.35 10.39 9.06 -89.69 -0.81 9.58 16 45 H 0.07 2.54 6.97 -2.39 -0.02 2.52 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.00 0.21 7.75 -2.39 -0.02 0.20 16 48 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.07 1.94 6.71 -2.39 -0.02 1.92 16 51 H 0.08 1.60 7.17 -2.39 -0.02 1.59 16 Total: -1.00 -69.39 391.59 2.52 -66.87 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.64 Total: 34.80 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.32 Total: -22.65 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.14 Total: -103.12 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.39 2.52 -66.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.947 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds