Wall clock time and date at job start Tue Mar 31 2020 16:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.49465 * 2 1 4 4 C 1.38232 * 120.00074 * 119.66455 * 3 2 1 5 5 C 1.38241 * 119.99759 * 179.78609 * 4 3 2 6 6 C 1.38236 * 119.99879 * 0.45952 * 5 4 3 7 7 C 1.38232 * 120.00204 * 359.77044 * 6 5 4 8 8 C 1.38234 * 119.99743 * 0.02562 * 7 6 5 9 9 C 1.53036 * 109.49751 * 239.93366 * 2 1 3 10 10 C 1.53038 * 109.53951 * 301.38079 * 9 2 1 11 11 C 1.53197 * 109.31131 * 298.63534 * 10 9 2 12 12 N 1.46924 * 108.77455 * 54.63325 * 11 10 9 13 13 C 1.34777 * 120.62925 * 126.36917 * 12 11 10 14 14 O 1.21284 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00279 * 0.02562 * 13 12 11 16 16 H 1.08997 * 109.46921 * 39.99427 * 15 13 12 17 17 N 1.46890 * 109.47665 * 160.00182 * 15 13 12 18 18 C 1.53005 * 109.47079 * 280.00292 * 15 13 12 19 19 C 1.52992 * 109.47274 * 174.99638 * 18 15 13 20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99988 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00047 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99854 * 359.72512 * 22 20 19 25 25 H 1.48498 * 109.46909 * 90.00086 * 24 22 20 26 26 H 1.48497 * 109.46701 * 209.99996 * 24 22 20 27 27 H 1.48500 * 109.46867 * 330.00101 * 24 22 20 28 28 C 1.46927 * 118.74228 * 306.64538 * 12 11 10 29 29 H 1.08994 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47163 * 300.06354 * 1 2 3 31 31 H 1.08996 * 109.47164 * 60.06528 * 1 2 3 32 32 H 1.07999 * 119.99954 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99815 * 180.25102 * 5 4 3 34 34 H 1.08003 * 119.99330 * 179.79309 * 6 5 4 35 35 H 1.08000 * 120.00206 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99675 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.46020 * 181.35896 * 9 2 1 38 38 H 1.09001 * 109.45968 * 61.40189 * 9 2 1 39 39 H 1.09003 * 109.49936 * 178.68663 * 10 9 2 40 40 H 1.09004 * 109.52412 * 58.60100 * 10 9 2 41 41 H 1.08995 * 109.58253 * 294.84652 * 11 10 9 42 42 H 1.08997 * 109.70281 * 174.48760 * 11 10 9 43 43 H 1.00899 * 111.00321 * 59.99242 * 17 15 13 44 44 H 1.00893 * 111.00376 * 183.95549 * 17 15 13 45 45 H 1.09004 * 109.47166 * 54.99264 * 18 15 13 46 46 H 1.09005 * 109.46988 * 294.99652 * 18 15 13 47 47 H 1.09004 * 109.47330 * 59.99726 * 19 18 15 48 48 H 1.08997 * 109.47279 * 300.00213 * 19 18 15 49 49 H 0.97001 * 119.99646 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.58744 * 173.14309 * 28 12 11 51 51 H 1.08997 * 109.58214 * 293.57243 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0329 1.4206 0.0000 4 6 2.8221 1.8745 1.0402 5 6 3.2871 3.1763 1.0379 6 6 2.9550 4.0271 0.0002 7 6 2.1619 3.5746 -1.0376 8 6 1.7004 2.2716 -1.0374 9 6 2.0408 -0.7227 -1.2485 10 6 1.5037 -2.1557 -1.2661 11 6 2.0154 -2.9038 -0.0310 12 7 1.6529 -2.1381 1.1694 13 6 0.9759 -2.7222 2.1779 14 8 0.6821 -2.0792 3.1634 15 6 0.5839 -4.1741 2.0810 16 1 1.3989 -4.7412 1.6313 17 7 0.3066 -4.6973 3.4252 18 6 -0.6693 -4.3072 1.2134 19 6 -0.9952 -5.7884 1.0120 20 6 -2.2300 -5.9195 0.1580 21 1 -2.7323 -5.0348 -0.2045 22 6 -2.7190 -7.1689 -0.1598 23 7 -3.7963 -7.2833 -0.9055 24 14 -1.8466 -8.6992 0.4620 25 1 -2.4082 -9.0878 1.7806 26 1 -2.0426 -9.8083 -0.5058 27 1 -0.3955 -8.4179 0.6055 28 6 2.0371 -0.7221 1.2470 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 3.0779 1.2111 1.8531 33 1 3.9070 3.5297 1.8486 34 1 3.3155 5.0451 0.0002 35 1 1.9021 4.2394 -1.8482 36 1 1.0804 1.9182 -1.8481 37 1 3.1305 -0.7435 -1.2358 38 1 1.6983 -0.1956 -2.1389 39 1 1.8488 -2.6625 -2.1673 40 1 0.4139 -2.1364 -1.2542 41 1 3.0993 -3.0035 -0.0874 42 1 1.5593 -3.8927 0.0148 43 1 -0.4458 -4.1876 3.8636 44 1 0.1042 -5.6852 3.3941 45 1 -0.4923 -3.8391 0.2450 46 1 -1.5071 -3.8147 1.7072 47 1 -1.1723 -6.2564 1.9804 48 1 -0.1575 -6.2808 0.5182 49 1 -4.1405 -8.1623 -1.1286 50 1 1.5933 -0.2712 2.1345 51 1 3.1228 -0.6403 1.2970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424122882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:43 Heat of formation + Delta-G solvation = -23.625591 kcal Electronic energy + Delta-G solvation = -29279.507794 eV Core-core repulsion = 25563.744634 eV Total energy + Delta-G solvation = -3715.763159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93874 -39.46513 -37.62890 -35.69630 -34.22782 -32.81635 -32.19946 -31.10779 -30.33851 -29.67894 -27.84169 -26.58961 -25.61172 -23.88316 -23.39593 -22.22993 -21.73699 -20.39272 -19.46294 -18.43126 -17.74689 -17.01905 -16.70229 -16.05763 -15.53817 -15.30644 -14.97130 -14.69693 -14.35116 -14.28044 -14.16292 -14.07411 -13.91848 -13.64349 -13.50438 -13.16087 -12.85533 -12.74808 -12.66963 -12.58039 -12.16264 -11.96383 -11.81953 -11.60915 -11.40972 -11.30821 -11.12880 -10.99566 -10.92559 -10.59047 -10.54727 -10.33190 -10.11587 -9.88583 -9.34408 -9.32981 -9.12227 -8.88164 -8.63772 -8.57097 -8.31486 -6.13380 -4.12911 1.15644 1.19782 2.85219 3.01311 3.23660 3.32103 3.32933 3.57606 4.35037 4.36004 4.41105 4.62649 4.77470 4.80485 4.83117 4.88432 4.92564 4.96960 5.04599 5.07112 5.19622 5.27921 5.33393 5.37334 5.43513 5.44907 5.58568 5.63498 5.65411 5.67139 5.72970 5.78885 5.82738 5.86484 5.92907 6.01199 6.05474 6.14553 6.24883 6.30244 6.31013 6.35438 6.44637 6.56533 6.63759 6.79978 7.07019 7.19560 7.30805 7.54575 7.65128 7.77409 8.38454 8.42923 8.90584 9.47937 10.99768 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002835 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.882755 B = 9874.292932 C =10562.805670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C -0.062 4.062 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.128 4.128 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.103 4.103 10 C -0.140 4.140 11 C 0.101 3.899 12 N -0.612 5.612 13 C 0.530 3.470 14 O -0.537 6.537 15 C 0.070 3.930 16 H 0.097 0.903 17 N -0.831 5.831 18 C -0.130 4.130 19 C -0.010 4.010 20 C -0.523 4.523 21 H 0.071 0.929 22 C 0.068 3.932 23 N -0.900 5.900 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.265 1.265 28 C 0.123 3.877 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.348 0.652 44 H 0.350 0.650 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.018 0.982 49 H 0.264 0.736 50 H 0.093 0.907 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.965 18.004 -0.814 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.063 4.063 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.146 4.146 7 C -0.137 4.137 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.178 4.178 11 C -0.022 4.022 12 N -0.346 5.346 13 C 0.318 3.682 14 O -0.413 6.413 15 C -0.045 4.045 16 H 0.114 0.886 17 N -0.363 5.363 18 C -0.170 4.170 19 C -0.047 4.047 20 C -0.560 4.560 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.539 5.539 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.190 1.190 28 C 0.000 4.000 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.029 0.971 48 H 0.036 0.964 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.433 18.412 -0.169 24.679 hybrid contribution -0.625 -1.044 -0.320 1.258 sum 15.808 17.369 -0.489 23.490 Atomic orbital electron populations 1.21895 0.92815 1.02897 1.01846 1.19771 0.96710 0.90857 0.96271 1.19745 0.97010 0.94854 0.94668 1.21209 0.98155 0.96154 0.98515 1.21145 0.99975 0.93888 0.98527 1.21132 0.99074 0.99634 0.94775 1.21126 0.98122 0.95833 0.98614 1.20983 1.00100 0.93573 0.98427 1.21587 1.00501 0.95425 0.96537 1.22008 1.02501 0.95396 0.97879 1.21868 1.00170 0.96078 0.84043 1.48018 1.57194 1.10679 1.18694 1.20765 0.76103 0.89621 0.81700 1.90628 1.54291 1.65399 1.30957 1.21548 0.99699 0.91584 0.91620 0.88565 1.58733 1.50959 1.08608 1.17966 1.22240 0.94984 1.00868 0.98908 1.19568 0.97582 0.90948 0.96627 1.21046 1.09566 0.94093 1.31342 0.91077 1.25041 0.94678 0.99092 0.94597 1.69911 1.22479 1.24050 1.37442 0.86785 0.80760 0.82892 0.78870 1.20238 1.21338 1.18953 1.21577 0.99115 0.81039 0.98273 0.91337 0.92550 0.92459 0.85671 0.86179 0.86357 0.86217 0.86063 0.91708 0.91395 0.90266 0.90331 0.91481 0.88575 0.83861 0.83560 0.91732 0.92092 0.97078 0.96416 0.92631 0.88828 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.79 37.16 0.29 -1.32 16 2 C -0.04 -0.36 0.60 -155.76 -0.09 -0.46 16 3 C -0.06 -0.62 4.76 -104.62 -0.50 -1.12 16 4 C -0.12 -1.19 8.98 -39.58 -0.36 -1.54 16 5 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 6 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 8 C -0.11 -1.04 8.70 -39.58 -0.34 -1.39 16 9 C -0.10 -0.95 4.55 -26.69 -0.12 -1.07 16 10 C -0.14 -1.41 5.74 -26.61 -0.15 -1.56 16 11 C 0.10 1.11 5.76 -3.71 -0.02 1.09 16 12 N -0.61 -7.95 2.42 -173.04 -0.42 -8.37 16 13 C 0.53 8.56 6.95 -10.99 -0.08 8.49 16 14 O -0.54 -10.25 15.66 5.55 0.09 -10.17 16 15 C 0.07 1.13 2.35 -68.87 -0.16 0.97 16 16 H 0.10 1.43 6.80 -51.93 -0.35 1.08 16 17 N -0.83 -13.47 8.94 -5.66 -0.05 -13.52 16 18 C -0.13 -2.40 4.45 -26.73 -0.12 -2.52 16 19 C -0.01 -0.21 3.81 -27.89 -0.11 -0.32 16 20 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 21 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 22 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 23 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 24 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 28 C 0.12 1.43 3.74 -3.93 -0.01 1.42 16 29 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.60 7.40 -51.93 -0.38 0.21 16 32 H 0.13 1.14 5.91 -52.49 -0.31 0.83 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 1.00 7.10 -52.49 -0.37 0.63 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 7.35 -51.93 -0.38 0.20 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.92 6.34 -51.93 -0.33 0.59 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.14 4.84 -51.93 -0.25 0.89 16 43 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 44 H 0.35 5.44 7.55 -39.30 -0.30 5.14 16 45 H 0.06 1.15 6.97 -51.93 -0.36 0.79 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 48 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.09 1.27 6.70 -51.93 -0.35 0.92 16 51 H 0.07 0.69 7.18 -51.93 -0.37 0.32 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -31.68 386.00 -9.94 -41.62 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.08 Total: 11.06 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.40 Total: -16.33 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.30 Total: -48.16 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.68 -9.94 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.992 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds