Wall clock time and date at job start Tue Mar 31 2020 16:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.49465 * 2 1 4 4 C 1.38232 * 120.00074 * 119.66455 * 3 2 1 5 5 C 1.38241 * 119.99759 * 179.78609 * 4 3 2 6 6 C 1.38236 * 119.99879 * 0.45952 * 5 4 3 7 7 C 1.38232 * 120.00204 * 359.77044 * 6 5 4 8 8 C 1.38234 * 119.99743 * 0.02562 * 7 6 5 9 9 C 1.53036 * 109.49751 * 239.93366 * 2 1 3 10 10 C 1.53038 * 109.53951 * 301.38079 * 9 2 1 11 11 C 1.53197 * 109.31131 * 298.63534 * 10 9 2 12 12 N 1.46924 * 108.77455 * 54.63325 * 11 10 9 13 13 C 1.34777 * 120.62925 * 126.36917 * 12 11 10 14 14 O 1.21284 * 119.99866 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00279 * 0.02562 * 13 12 11 16 16 H 1.08997 * 109.46921 * 39.99427 * 15 13 12 17 17 N 1.46890 * 109.47665 * 160.00182 * 15 13 12 18 18 C 1.53005 * 109.47079 * 280.00292 * 15 13 12 19 19 C 1.52992 * 109.47274 * 174.99638 * 18 15 13 20 20 C 1.50700 * 109.47257 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99988 * 359.97438 * 20 19 18 22 22 C 1.37885 * 120.00047 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99854 * 359.72512 * 22 20 19 25 25 H 1.48498 * 109.46909 * 90.00086 * 24 22 20 26 26 H 1.48497 * 109.46701 * 209.99996 * 24 22 20 27 27 H 1.48500 * 109.46867 * 330.00101 * 24 22 20 28 28 C 1.46927 * 118.74228 * 306.64538 * 12 11 10 29 29 H 1.08994 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47163 * 300.06354 * 1 2 3 31 31 H 1.08996 * 109.47164 * 60.06528 * 1 2 3 32 32 H 1.07999 * 119.99954 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.99815 * 180.25102 * 5 4 3 34 34 H 1.08003 * 119.99330 * 179.79309 * 6 5 4 35 35 H 1.08000 * 120.00206 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99675 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.46020 * 181.35896 * 9 2 1 38 38 H 1.09001 * 109.45968 * 61.40189 * 9 2 1 39 39 H 1.09003 * 109.49936 * 178.68663 * 10 9 2 40 40 H 1.09004 * 109.52412 * 58.60100 * 10 9 2 41 41 H 1.08995 * 109.58253 * 294.84652 * 11 10 9 42 42 H 1.08997 * 109.70281 * 174.48760 * 11 10 9 43 43 H 1.00899 * 111.00321 * 59.99242 * 17 15 13 44 44 H 1.00893 * 111.00376 * 183.95549 * 17 15 13 45 45 H 1.09004 * 109.47166 * 54.99264 * 18 15 13 46 46 H 1.09005 * 109.46988 * 294.99652 * 18 15 13 47 47 H 1.09004 * 109.47330 * 59.99726 * 19 18 15 48 48 H 1.08997 * 109.47279 * 300.00213 * 19 18 15 49 49 H 0.97001 * 119.99646 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.58744 * 173.14309 * 28 12 11 51 51 H 1.08997 * 109.58214 * 293.57243 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0329 1.4206 0.0000 4 6 2.8221 1.8745 1.0402 5 6 3.2871 3.1763 1.0379 6 6 2.9550 4.0271 0.0002 7 6 2.1619 3.5746 -1.0376 8 6 1.7004 2.2716 -1.0374 9 6 2.0408 -0.7227 -1.2485 10 6 1.5037 -2.1557 -1.2661 11 6 2.0154 -2.9038 -0.0310 12 7 1.6529 -2.1381 1.1694 13 6 0.9759 -2.7222 2.1779 14 8 0.6821 -2.0792 3.1634 15 6 0.5839 -4.1741 2.0810 16 1 1.3989 -4.7412 1.6313 17 7 0.3066 -4.6973 3.4252 18 6 -0.6693 -4.3072 1.2134 19 6 -0.9952 -5.7884 1.0120 20 6 -2.2300 -5.9195 0.1580 21 1 -2.7323 -5.0348 -0.2045 22 6 -2.7190 -7.1689 -0.1598 23 7 -3.7963 -7.2833 -0.9055 24 14 -1.8466 -8.6992 0.4620 25 1 -2.4082 -9.0878 1.7806 26 1 -2.0426 -9.8083 -0.5058 27 1 -0.3955 -8.4179 0.6055 28 6 2.0371 -0.7221 1.2470 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 3.0779 1.2111 1.8531 33 1 3.9070 3.5297 1.8486 34 1 3.3155 5.0451 0.0002 35 1 1.9021 4.2394 -1.8482 36 1 1.0804 1.9182 -1.8481 37 1 3.1305 -0.7435 -1.2358 38 1 1.6983 -0.1956 -2.1389 39 1 1.8488 -2.6625 -2.1673 40 1 0.4139 -2.1364 -1.2542 41 1 3.0993 -3.0035 -0.0874 42 1 1.5593 -3.8927 0.0148 43 1 -0.4458 -4.1876 3.8636 44 1 0.1042 -5.6852 3.3941 45 1 -0.4923 -3.8391 0.2450 46 1 -1.5071 -3.8147 1.7072 47 1 -1.1723 -6.2564 1.9804 48 1 -0.1575 -6.2808 0.5182 49 1 -4.1405 -8.1623 -1.1286 50 1 1.5933 -0.2712 2.1345 51 1 3.1228 -0.6403 1.2970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424122882.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:42 Heat of formation + Delta-G solvation = -42.412093 kcal Electronic energy + Delta-G solvation = -29280.322438 eV Core-core repulsion = 25563.744634 eV Total energy + Delta-G solvation = -3716.577803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91513 -40.42637 -38.56899 -37.18707 -35.22346 -34.77131 -33.07497 -32.08917 -31.79716 -30.45632 -29.06435 -27.78811 -26.80916 -25.08851 -24.43787 -23.11219 -22.51162 -22.04169 -20.49959 -19.43016 -19.08506 -18.59829 -17.76273 -17.15804 -16.42851 -16.28227 -16.23678 -16.00577 -15.70594 -15.41756 -15.26633 -15.02850 -14.95675 -14.73537 -14.61197 -14.43102 -14.05715 -14.01995 -13.79889 -13.56971 -13.38737 -13.02021 -12.97910 -12.79661 -12.68829 -12.37613 -12.19158 -12.06448 -11.96971 -11.90675 -11.72568 -11.65904 -11.43007 -11.40662 -11.35585 -10.77199 -10.66737 -9.79636 -9.70668 -9.58609 -9.56823 -8.29003 -6.34296 0.47692 0.53029 1.39061 1.40055 1.51415 1.58000 1.93640 2.36654 2.89885 3.06621 3.41346 3.57852 3.66990 3.71146 3.88972 4.01942 4.04296 4.10298 4.13532 4.17539 4.18065 4.21975 4.33129 4.49615 4.54551 4.57443 4.61333 4.63750 4.69991 4.71666 4.78179 4.82342 4.88643 4.93530 4.98241 5.06990 5.13416 5.16509 5.19703 5.21623 5.36006 5.45335 5.46520 5.49079 5.62746 5.65897 5.67367 5.73161 6.03832 6.14731 6.25832 6.37545 6.47660 6.73830 7.15994 7.30371 8.87682 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002835 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.882755 B = 9874.292932 C =10562.805670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.026 4.026 3 C -0.074 4.074 4 C -0.137 4.137 5 C -0.125 4.125 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.097 4.097 10 C -0.138 4.138 11 C 0.095 3.905 12 N -0.604 5.604 13 C 0.525 3.475 14 O -0.574 6.574 15 C 0.080 3.920 16 H 0.118 0.882 17 N -0.830 5.830 18 C -0.116 4.116 19 C -0.004 4.004 20 C -0.531 4.531 21 H 0.026 0.974 22 C 0.003 3.997 23 N -0.952 5.952 24 Si 0.951 3.049 25 H -0.270 1.270 26 H -0.288 1.288 27 H -0.235 1.235 28 C 0.123 3.877 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.344 0.656 44 H 0.355 0.645 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.021 0.979 48 H 0.033 0.967 49 H 0.266 0.734 50 H 0.071 0.929 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.002 18.064 -1.112 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.142 4.142 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.135 4.135 10 C -0.176 4.176 11 C -0.027 4.027 12 N -0.336 5.336 13 C 0.313 3.687 14 O -0.453 6.453 15 C -0.035 4.035 16 H 0.136 0.864 17 N -0.362 5.362 18 C -0.156 4.156 19 C -0.042 4.042 20 C -0.569 4.569 21 H 0.044 0.956 22 C -0.193 4.193 23 N -0.593 5.593 24 Si 0.774 3.226 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.158 1.158 28 C 0.001 3.999 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.170 0.830 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.505 18.492 -0.489 26.882 hybrid contribution -1.629 -0.920 -0.281 1.892 sum 17.876 17.571 -0.771 25.078 Atomic orbital electron populations 1.21845 0.94323 1.01359 1.01550 1.19652 0.95317 0.91534 0.96173 1.19718 0.97775 0.94565 0.95366 1.21323 0.98709 0.96885 0.98546 1.21408 1.00016 0.93567 0.99256 1.21456 0.98564 1.00609 0.94321 1.21423 0.97722 0.95784 0.99257 1.21141 1.00361 0.94020 0.98486 1.21565 1.01166 0.94604 0.96125 1.21994 1.01161 0.96195 0.98210 1.22093 1.01797 0.95483 0.83293 1.48069 1.55769 1.11342 1.18438 1.20781 0.76366 0.89557 0.81980 1.90612 1.56022 1.66026 1.32627 1.21467 0.98805 0.92179 0.91072 0.86443 1.58750 1.50783 1.08892 1.17788 1.22028 0.95633 0.98527 0.99422 1.19485 0.95443 0.93266 0.95958 1.21391 1.11159 0.92676 1.31665 0.95554 1.26054 0.95433 1.03056 0.94788 1.70081 1.24674 1.25030 1.39497 0.85643 0.80973 0.77786 0.78151 1.19515 1.21413 1.15822 1.21650 0.99962 0.80157 0.98134 0.93420 0.94250 0.91319 0.85766 0.84557 0.84207 0.84267 0.85357 0.90375 0.90429 0.88382 0.92535 0.88727 0.89312 0.84278 0.83016 0.91586 0.94379 0.96036 0.94858 0.92560 0.91083 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.79 71.98 0.56 -2.65 16 2 C -0.03 -0.52 0.60 -52.99 -0.03 -0.55 16 3 C -0.07 -1.39 4.76 -19.87 -0.09 -1.49 16 4 C -0.14 -2.52 8.98 22.27 0.20 -2.32 16 5 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 6 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 7 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 8 C -0.12 -2.08 8.70 22.27 0.19 -1.88 16 9 C -0.10 -1.60 4.55 30.62 0.14 -1.46 16 10 C -0.14 -2.55 5.74 30.67 0.18 -2.38 16 11 C 0.10 1.90 5.76 86.36 0.50 2.40 16 12 N -0.60 -15.23 2.42 -819.75 -1.98 -17.21 16 13 C 0.52 16.86 6.95 87.66 0.61 17.47 16 14 O -0.57 -22.33 15.66 -3.04 -0.05 -22.38 16 15 C 0.08 2.48 2.35 44.17 0.10 2.58 16 16 H 0.12 3.17 6.80 -2.39 -0.02 3.16 16 17 N -0.83 -26.00 8.94 -171.82 -1.54 -27.53 16 18 C -0.12 -4.29 4.45 30.59 0.14 -4.15 16 19 C 0.00 -0.17 3.81 29.85 0.11 -0.06 16 20 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 21 H 0.03 1.64 7.99 -2.91 -0.02 1.61 16 22 C 0.00 0.19 5.47 84.66 0.46 0.66 16 23 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 24 Si 0.95 42.12 27.47 68.60 1.88 44.01 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 28 C 0.12 2.82 3.74 86.22 0.32 3.14 16 29 H 0.05 1.33 5.97 -2.39 -0.01 1.32 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.44 7.40 -2.39 -0.02 1.43 16 32 H 0.12 2.22 5.91 -2.91 -0.02 2.20 16 33 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.13 1.91 7.10 -2.91 -0.02 1.89 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.16 7.35 -2.39 -0.02 1.14 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.32 6.34 -2.38 -0.02 1.30 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.93 4.84 -2.39 -0.01 1.92 16 43 H 0.34 11.38 8.58 -89.70 -0.77 10.61 16 44 H 0.35 10.33 7.55 -89.70 -0.68 9.65 16 45 H 0.07 2.39 6.97 -2.38 -0.02 2.37 16 46 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.02 0.88 6.30 -2.38 -0.02 0.87 16 48 H 0.03 1.34 7.19 -2.39 -0.02 1.32 16 49 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.07 1.98 6.70 -2.39 -0.02 1.96 16 51 H 0.08 1.63 7.18 -2.39 -0.02 1.61 16 Total: -1.00 -70.56 386.00 2.37 -68.19 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.56 Total: 38.28 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.31 Total: -24.90 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.22 Total: -103.20 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.01 kcal Total: -70.56 2.37 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424122882.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.779 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds