Wall clock time and date at job start Tue Mar 31 2020 16:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46047 * 2 1 4 4 C 1.38230 * 120.00043 * 119.72722 * 3 2 1 5 5 C 1.38236 * 119.99952 * 179.74651 * 4 3 2 6 6 C 1.38228 * 119.99918 * 0.52746 * 5 4 3 7 7 C 1.38239 * 120.00075 * 359.74765 * 6 5 4 8 8 C 1.38233 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.53048 * 109.45916 * 240.04219 * 2 1 3 10 10 C 1.53185 * 109.31054 * 301.34074 * 9 2 1 11 11 N 1.46924 * 108.77991 * 305.36589 * 10 9 2 12 12 C 1.34775 * 120.62807 * 233.58754 * 11 10 9 13 13 O 1.21289 * 119.99551 * 180.02562 * 12 11 10 14 14 C 1.50697 * 120.00462 * 0.02562 * 12 11 10 15 15 H 1.08998 * 109.46649 * 319.99748 * 14 12 11 16 16 N 1.46905 * 109.47084 * 200.00008 * 14 12 11 17 17 C 1.52998 * 109.47248 * 79.99772 * 14 12 11 18 18 C 1.53005 * 109.46835 * 185.00275 * 17 14 12 19 19 C 1.50694 * 109.46916 * 180.02562 * 18 17 14 20 20 H 1.08002 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00003 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46923 * 90.00349 * 23 21 19 25 25 H 1.48500 * 109.47102 * 210.00050 * 23 21 19 26 26 H 1.48499 * 109.47078 * 330.00338 * 23 21 19 27 27 C 1.46926 * 118.73639 * 53.60752 * 11 10 9 28 28 C 1.53038 * 109.46406 * 119.97162 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.02538 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.02710 * 1 2 3 32 32 H 1.07999 * 120.00008 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.99806 * 180.29768 * 5 4 3 34 34 H 1.08005 * 120.00155 * 179.76927 * 6 5 4 35 35 H 1.08002 * 120.00135 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.99841 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.49785 * 61.29880 * 9 2 1 38 38 H 1.08999 * 109.49422 * 181.39074 * 9 2 1 39 39 H 1.09005 * 109.58610 * 185.57708 * 10 9 2 40 40 H 1.09001 * 109.58364 * 65.15875 * 10 9 2 41 41 H 1.00898 * 111.00058 * 299.99613 * 16 14 12 42 42 H 1.00898 * 110.99714 * 63.94770 * 16 14 12 43 43 H 1.08997 * 109.47127 * 304.99915 * 17 14 12 44 44 H 1.09001 * 109.46931 * 65.00289 * 17 14 12 45 45 H 1.09005 * 109.46797 * 300.00038 * 18 17 14 46 46 H 1.09001 * 109.47316 * 59.99714 * 18 17 14 47 47 H 0.97001 * 120.00512 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.58237 * 186.60513 * 27 11 10 49 49 H 1.08998 * 109.70247 * 66.25446 * 27 11 10 50 50 H 1.09000 * 109.50097 * 178.60245 * 28 2 1 51 51 H 1.08993 * 109.49842 * 298.67518 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0321 1.4209 0.0000 4 6 2.8220 1.8749 1.0396 5 6 3.2869 3.1767 1.0369 6 6 2.9528 4.0278 0.0002 7 6 2.1581 3.5755 -1.0366 8 6 1.6979 2.2720 -1.0368 9 6 2.0398 -0.7206 -1.2503 10 6 1.4996 -2.1540 -1.2645 11 7 1.8626 -2.8089 -0.0004 12 6 2.5157 -3.9878 -0.0006 13 8 2.8093 -4.5185 1.0497 14 6 2.8811 -4.6466 -1.3058 15 1 2.0611 -4.5290 -2.0141 16 7 3.1315 -6.0763 -1.0794 17 6 4.1423 -3.9913 -1.8723 18 6 4.4423 -4.5736 -3.2551 19 6 5.6849 -3.9287 -3.8128 20 1 6.2080 -3.1782 -3.2387 21 6 6.1539 -4.2967 -5.0560 22 7 5.5166 -5.2101 -5.7553 23 14 7.6938 -3.4967 -5.7477 24 1 8.8858 -4.2828 -5.3399 25 1 7.6090 -3.4592 -7.2298 26 1 7.8106 -2.1123 -5.2233 27 6 1.4996 -2.1543 1.2639 28 6 2.0399 -0.7208 1.2500 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5134 -0.8903 32 1 3.0798 1.2111 1.8516 33 1 3.9081 3.5299 1.8467 34 1 3.3129 5.0460 0.0000 35 1 1.8967 4.2406 -1.8464 36 1 1.0774 1.9186 -1.8470 37 1 1.6958 -0.1931 -2.1399 38 1 3.1295 -0.7426 -1.2385 39 1 1.9382 -2.7015 -2.0988 40 1 0.4147 -2.1345 -1.3677 41 1 3.8881 -6.2118 -0.4257 42 1 2.2946 -6.5448 -0.7660 43 1 3.9863 -2.9159 -1.9570 44 1 4.9830 -4.1852 -1.2062 45 1 4.5983 -5.6491 -3.1703 46 1 3.6016 -4.3798 -3.9212 47 1 5.8468 -5.4693 -6.6298 48 1 1.9383 -2.7020 2.0980 49 1 0.4150 -2.1350 1.3696 50 1 3.1296 -0.7429 1.2381 51 1 1.6963 -0.1934 2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424167331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:23 Heat of formation + Delta-G solvation = -26.391897 kcal Electronic energy + Delta-G solvation = -29150.614324 eV Core-core repulsion = 25434.731208 eV Total energy + Delta-G solvation = -3715.883116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90518 -39.56942 -37.70782 -35.29818 -34.30702 -32.80759 -31.73850 -30.76670 -30.22139 -30.05670 -28.00963 -26.54646 -24.99467 -24.11349 -23.21819 -22.14380 -21.77224 -20.41053 -19.65912 -18.15328 -17.62935 -16.85571 -16.36003 -15.86682 -15.53134 -15.38265 -15.21813 -14.95907 -14.58136 -14.40099 -14.29711 -13.98132 -13.86779 -13.62429 -13.37297 -13.19186 -12.67434 -12.34765 -12.31135 -12.17848 -12.02317 -11.92955 -11.83803 -11.51757 -11.38711 -11.30061 -10.91501 -10.89178 -10.72075 -10.64213 -10.52384 -10.42122 -10.01736 -9.78356 -9.35518 -9.07130 -8.99751 -8.84382 -8.58996 -8.33583 -8.18370 -5.93516 -3.95527 1.20416 1.24589 2.77177 3.08117 3.35082 3.41415 3.44341 3.62108 4.33417 4.37700 4.50201 4.63249 4.73664 4.82910 4.87534 4.90755 4.95971 4.98354 5.04916 5.16424 5.17472 5.28516 5.39355 5.41291 5.42656 5.47528 5.51011 5.57097 5.66017 5.69418 5.75471 5.80017 5.84475 5.86049 5.89416 5.94893 6.01965 6.20730 6.34173 6.35837 6.43605 6.48885 6.55605 6.67666 6.84634 7.08767 7.37111 7.54645 7.76084 7.81278 7.96195 8.13443 8.30578 8.48907 9.12359 9.67713 11.17353 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.003658 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.128579 B = 7651.684137 C = 9777.098902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.128 4.128 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.121 4.121 10 C 0.101 3.899 11 N -0.609 5.609 12 C 0.486 3.514 13 O -0.556 6.556 14 C 0.077 3.923 15 H 0.097 0.903 16 N -0.807 5.807 17 C -0.096 4.096 18 C 0.032 3.968 19 C -0.521 4.521 20 H 0.051 0.949 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.887 3.113 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.108 3.892 28 C -0.124 4.124 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.012 0.988 47 H 0.259 0.741 48 H 0.089 0.911 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 15.343 13.138 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.146 4.146 7 C -0.137 4.137 8 C -0.132 4.132 9 C -0.159 4.159 10 C -0.022 4.022 11 N -0.343 5.343 12 C 0.273 3.727 13 O -0.435 6.435 14 C -0.038 4.038 15 H 0.115 0.885 16 N -0.335 5.335 17 C -0.134 4.134 18 C -0.005 4.005 19 C -0.560 4.560 20 H 0.070 0.930 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.715 3.285 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.015 4.015 28 C -0.162 4.162 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.481 14.905 12.735 23.240 hybrid contribution 0.649 0.887 0.526 1.218 sum -11.832 15.793 13.261 23.775 Atomic orbital electron populations 1.21992 0.93593 1.02244 1.02110 1.19481 0.95694 0.90831 0.95996 1.19818 0.97201 0.94921 0.94580 1.21199 0.98058 0.95912 0.98739 1.21146 0.99902 0.94025 0.98654 1.21132 0.98971 0.99700 0.94797 1.21136 0.98102 0.95949 0.98477 1.21003 1.00323 0.93579 0.98288 1.22007 1.02156 0.94794 0.96985 1.21922 1.00123 0.93563 0.86580 1.48216 1.57723 1.21531 1.06841 1.22739 0.75738 0.80484 0.93695 1.90626 1.54590 1.64082 1.34162 1.21862 1.01532 0.88926 0.91526 0.88478 1.59020 1.11342 1.08344 1.54782 1.21691 0.92698 0.98231 1.00800 1.19007 0.95888 0.97482 0.88089 1.21265 1.10602 1.22220 1.01882 0.93048 1.24972 0.96942 0.95191 0.97098 1.69969 1.39646 1.31055 1.12497 0.86679 0.83882 0.79801 0.78128 1.20722 1.21278 1.20013 1.21573 0.99546 0.92668 0.87675 1.22061 1.01568 0.95174 0.97427 0.92541 0.91715 0.92222 0.85744 0.86298 0.86390 0.86208 0.86040 0.90216 0.90598 0.88127 0.91199 0.83873 0.85517 0.92706 0.92927 0.94701 0.96933 0.93112 0.89264 0.91625 0.90994 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 7.53 37.16 0.28 -0.85 16 2 C -0.02 -0.19 0.60 -155.62 -0.09 -0.28 16 3 C -0.07 -0.65 4.76 -104.62 -0.50 -1.15 16 4 C -0.12 -1.20 8.98 -39.58 -0.36 -1.55 16 5 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 6 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 8 C -0.11 -1.09 8.70 -39.58 -0.34 -1.44 16 9 C -0.12 -1.30 4.74 -26.61 -0.13 -1.43 16 10 C 0.10 1.14 5.29 -3.72 -0.02 1.12 16 11 N -0.61 -7.90 2.97 -172.77 -0.51 -8.41 16 12 C 0.49 7.83 6.94 -10.99 -0.08 7.75 16 13 O -0.56 -10.40 15.66 5.55 0.09 -10.31 16 14 C 0.08 1.31 2.29 -68.86 -0.16 1.15 16 15 H 0.10 1.55 6.80 -51.93 -0.35 1.20 16 16 N -0.81 -13.81 8.44 -5.65 -0.05 -13.86 16 17 C -0.10 -1.94 4.45 -26.73 -0.12 -2.05 16 18 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.11 1.21 5.96 -3.71 -0.02 1.18 16 28 C -0.12 -1.21 3.56 -26.61 -0.09 -1.31 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 31 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 32 H 0.12 1.11 5.89 -52.49 -0.31 0.80 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.01 7.09 -52.49 -0.37 0.64 16 37 H 0.08 0.77 7.34 -51.93 -0.38 0.39 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.28 4.84 -51.93 -0.25 1.03 16 40 H 0.07 0.65 6.69 -51.93 -0.35 0.31 16 41 H 0.35 6.05 8.58 -39.29 -0.34 5.72 16 42 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 43 H 0.05 1.05 6.97 -51.93 -0.36 0.69 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 49 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 50 H 0.07 0.81 7.61 -51.93 -0.40 0.42 16 51 H 0.07 0.62 7.42 -51.93 -0.39 0.23 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -32.46 389.49 -10.36 -42.82 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.11 Total: 9.30 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.37 Total: -16.08 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.18 Total: -48.30 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.46 -10.36 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424167331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.432 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds