Wall clock time and date at job start Tue Mar 31 2020 16:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.30159 * 2 1 4 4 C 1.54385 * 110.34376 * 237.71192 * 2 1 3 5 5 N 1.48138 * 104.62151 * 264.99604 * 4 2 1 6 6 C 1.34775 * 127.84285 * 140.40896 * 5 4 2 7 7 O 1.21271 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00039 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46653 * 40.01086 * 8 6 5 10 10 N 1.46896 * 109.46878 * 160.00397 * 8 6 5 11 11 C 1.52995 * 109.47466 * 280.00761 * 8 6 5 12 12 C 1.52999 * 109.47220 * 175.00217 * 11 8 6 13 13 C 1.50696 * 109.47248 * 180.02562 * 12 11 8 14 14 H 1.07998 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00092 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47295 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47385 * 119.99642 * 17 15 13 20 20 H 1.48509 * 109.47223 * 239.99487 * 17 15 13 21 21 C 1.48152 * 104.32060 * 320.41290 * 5 4 2 22 22 C 1.54284 * 110.34646 * 122.17582 * 2 1 3 23 23 H 1.09002 * 110.34125 * 359.89508 * 22 2 1 24 24 C 1.50701 * 110.34106 * 237.74718 * 22 2 1 25 25 C 1.38230 * 120.00561 * 109.70930 * 24 22 2 26 26 C 1.38232 * 120.00551 * 179.97438 * 25 24 22 27 27 C 1.38237 * 119.99798 * 359.97438 * 26 25 24 28 28 C 1.38239 * 120.00068 * 0.27488 * 27 26 25 29 29 C 1.38237 * 119.99855 * 289.68448 * 24 22 2 30 30 H 1.09001 * 109.46840 * 297.82300 * 1 2 3 31 31 H 1.08989 * 109.47411 * 57.82477 * 1 2 3 32 32 H 1.09007 * 109.46690 * 177.82577 * 1 2 3 33 33 H 1.09000 * 109.47008 * 189.08897 * 3 2 1 34 34 H 1.08999 * 109.46963 * 309.08477 * 3 2 1 35 35 H 1.08996 * 109.47264 * 69.08449 * 3 2 1 36 36 H 1.09001 * 110.40770 * 23.77896 * 4 2 1 37 37 H 1.09001 * 110.41007 * 146.20785 * 4 2 1 38 38 H 1.00901 * 111.00276 * 60.00198 * 10 8 6 39 39 H 1.00902 * 111.00166 * 183.95591 * 10 8 6 40 40 H 1.09005 * 109.46985 * 294.99947 * 11 8 6 41 41 H 1.08999 * 109.47274 * 54.99778 * 11 8 6 42 42 H 1.09005 * 109.46921 * 299.99769 * 12 11 8 43 43 H 1.08999 * 109.47356 * 59.99610 * 12 11 8 44 44 H 0.96995 * 120.00292 * 179.97438 * 16 15 13 45 45 H 1.09003 * 110.40663 * 280.80361 * 21 5 4 46 46 H 1.09001 * 110.40516 * 158.37082 * 21 5 4 47 47 H 1.08008 * 119.99854 * 359.97438 * 25 24 22 48 48 H 1.07994 * 120.00451 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00092 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00423 * 179.72450 * 28 27 26 51 51 H 1.08007 * 120.00037 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 6 2.0667 -0.7732 -1.2237 5 7 2.3140 -2.1445 -0.7206 6 6 2.0774 -3.3118 -1.3513 7 8 1.6062 -3.3126 -2.4687 8 6 2.3994 -4.6161 -0.6684 9 1 2.1253 -4.5521 0.3847 10 7 1.6436 -5.7023 -1.3060 11 6 3.8983 -4.8985 -0.7890 12 6 4.2461 -6.1565 0.0093 13 6 5.7225 -6.4343 -0.1090 14 1 6.3499 -5.7794 -0.6953 15 6 6.2721 -7.5253 0.5304 16 7 5.5080 -8.3231 1.2440 17 14 8.1020 -7.8700 0.3832 18 1 8.7343 -6.8319 -0.4698 19 1 8.7205 -7.8462 1.7331 20 1 8.3061 -9.2066 -0.2313 21 6 2.8803 -1.9415 0.6333 22 6 2.0664 -0.7703 1.2244 23 1 1.2399 -1.1472 1.8269 24 6 2.9556 0.1192 2.0546 25 6 2.5313 0.5565 3.2953 26 6 3.3471 1.3720 4.0571 27 6 4.5876 1.7498 3.5782 28 6 5.0099 1.3168 2.3351 29 6 4.1959 0.4975 1.5755 30 1 -0.3633 0.4797 0.9089 31 1 -0.3633 0.5472 -0.8697 32 1 -0.3633 -1.0270 -0.0390 33 1 3.1386 1.4236 -0.1623 34 1 1.5793 2.0005 -0.7977 35 1 1.8429 1.9030 0.9599 36 1 1.3223 -0.7890 -2.0198 37 1 2.9949 -0.3256 -1.5790 38 1 1.8800 -5.7820 -2.2837 39 1 1.7924 -6.5770 -0.8255 40 1 4.1561 -5.0504 -1.8372 41 1 4.4604 -4.0515 -0.3957 42 1 3.9882 -6.0045 1.0574 43 1 3.6839 -7.0035 -0.3841 44 1 5.8945 -9.0908 1.6935 45 1 3.9355 -1.6763 0.5680 46 1 2.7496 -2.8387 1.2383 47 1 1.5622 0.2610 3.6697 48 1 3.0154 1.7140 5.0262 49 1 5.2249 2.3873 4.1731 50 1 5.9772 1.6156 1.9590 51 1 4.5275 0.1559 0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:10 Heat of formation + Delta-G solvation = -22.351391 kcal Electronic energy + Delta-G solvation = -29092.925304 eV Core-core repulsion = 25377.217398 eV Total energy + Delta-G solvation = -3715.707906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95038 -39.27322 -37.79996 -35.44025 -33.80149 -32.84335 -32.20966 -31.13058 -29.89117 -28.58966 -27.62124 -27.29612 -25.58824 -24.21915 -23.30615 -22.57698 -21.40786 -20.44426 -19.24024 -18.78610 -17.33454 -17.04342 -16.32298 -15.78660 -15.67393 -15.21198 -15.07971 -14.63914 -14.45710 -14.26592 -14.04604 -13.88691 -13.82429 -13.44083 -13.30291 -13.11600 -12.91714 -12.69577 -12.41879 -12.26371 -12.07657 -11.99940 -11.77826 -11.58383 -11.46278 -11.19499 -11.10859 -10.98604 -10.87681 -10.74595 -10.72623 -10.65720 -9.98621 -9.89453 -9.27577 -9.19205 -9.04672 -8.80320 -8.60425 -8.44430 -8.18058 -6.08783 -4.11700 1.17584 1.24381 2.93136 3.02532 3.25870 3.33958 3.37854 3.58660 4.21034 4.38962 4.39859 4.46823 4.74340 4.78137 4.82843 4.91362 4.97189 5.03266 5.11076 5.16196 5.21086 5.27658 5.33194 5.43147 5.45791 5.50105 5.52184 5.59402 5.67544 5.72210 5.76498 5.77986 5.80274 5.86654 5.89149 5.98818 5.99933 6.09909 6.25805 6.29552 6.35510 6.36275 6.46806 6.54128 6.83426 6.87251 7.45223 7.52228 7.61881 7.72287 7.88358 7.91286 8.31121 8.44255 8.94350 9.53267 11.02189 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.003502 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.717071 B = 7994.349736 C = 9928.116515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.139 4.139 4 C 0.113 3.887 5 N -0.624 5.624 6 C 0.548 3.452 7 O -0.538 6.538 8 C 0.079 3.921 9 H 0.095 0.905 10 N -0.831 5.831 11 C -0.136 4.136 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.105 3.895 22 C -0.058 4.058 23 H 0.091 0.909 24 C -0.062 4.062 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.111 4.111 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.345 0.655 39 H 0.354 0.646 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.261 0.739 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 22.116 3.758 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.010 4.010 5 N -0.359 5.359 6 C 0.338 3.662 7 O -0.414 6.414 8 C -0.036 4.036 9 H 0.113 0.887 10 N -0.363 5.363 11 C -0.176 4.176 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.019 4.019 22 C -0.077 4.077 23 H 0.109 0.891 24 C -0.063 4.063 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.129 4.129 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.010 22.232 3.371 23.870 hybrid contribution 2.106 -0.673 -0.001 2.211 sum -5.904 21.559 3.370 22.606 Atomic orbital electron populations 1.21851 0.93388 1.02241 1.01798 1.21483 0.96205 0.95390 0.93844 1.22064 1.01297 0.94288 1.01968 1.22415 1.00670 0.81622 0.96311 1.48912 1.64207 1.05234 1.17521 1.20557 0.76116 0.83933 0.85625 1.90635 1.44443 1.86841 1.19476 1.21437 0.94805 0.88845 0.98531 0.88725 1.58743 1.61268 1.08503 1.07802 1.22368 0.91831 1.01776 1.01645 1.19097 0.96733 0.90624 0.94741 1.21208 0.93500 1.10497 1.30853 0.92698 1.25003 0.98017 0.96074 0.95166 1.69955 1.35239 1.15581 1.32401 0.86545 0.85452 0.78224 0.77859 1.19757 1.20932 1.20941 1.22604 0.97534 0.98418 0.83297 1.21252 0.97179 0.94052 0.95249 0.89052 1.19577 0.94568 0.97675 0.94435 1.21022 0.99882 0.98359 0.94128 1.21103 0.94587 0.98368 0.99690 1.21131 0.96464 1.00505 0.96227 1.21133 0.99611 0.98072 0.94785 1.21056 0.93851 0.98020 0.99946 0.92407 0.92359 0.92242 0.91747 0.92757 0.91926 0.89928 0.91367 0.84137 0.83024 0.92725 0.92576 0.96378 0.96417 0.92943 0.90278 0.89393 0.86183 0.86278 0.86373 0.86145 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.23 37.16 0.31 -0.91 16 2 C -0.07 -0.63 1.02 -153.11 -0.16 -0.79 16 3 C -0.14 -1.12 7.20 37.16 0.27 -0.85 16 4 C 0.11 1.31 6.14 -2.41 -0.01 1.30 16 5 N -0.62 -8.70 3.32 -169.31 -0.56 -9.27 16 6 C 0.55 9.56 7.16 -10.98 -0.08 9.48 16 7 O -0.54 -10.97 16.52 5.57 0.09 -10.87 16 8 C 0.08 1.39 2.64 -68.87 -0.18 1.21 16 9 H 0.09 1.60 6.98 -51.93 -0.36 1.24 16 10 N -0.83 -14.74 8.94 -5.66 -0.05 -14.79 16 11 C -0.14 -2.73 4.78 -26.73 -0.13 -2.86 16 12 C 0.03 0.61 4.74 -27.89 -0.13 0.48 16 13 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.10 1.25 6.02 -2.41 -0.01 1.23 16 22 C -0.06 -0.56 2.93 -90.37 -0.27 -0.83 16 23 H 0.09 0.86 7.55 -51.93 -0.39 0.47 16 24 C -0.06 -0.58 3.23 -104.62 -0.34 -0.92 16 25 C -0.12 -1.02 9.59 -39.59 -0.38 -1.40 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 27 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 28 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 29 C -0.11 -1.03 6.49 -39.58 -0.26 -1.29 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.52 5.61 -51.93 -0.29 0.23 16 34 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 35 H 0.06 0.52 7.10 -51.93 -0.37 0.15 16 36 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 37 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 38 H 0.35 6.20 8.58 -39.29 -0.34 5.86 16 39 H 0.35 6.24 7.55 -39.29 -0.30 5.95 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.09 7.83 -51.93 -0.41 0.68 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.08 0.93 6.09 -51.93 -0.32 0.61 16 46 H 0.09 1.10 6.74 -51.93 -0.35 0.75 16 47 H 0.12 0.90 8.01 -52.48 -0.42 0.48 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.12 6.52 -52.48 -0.34 0.77 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -31.51 397.60 -10.17 -41.68 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -8.38 Total: 9.78 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.98 Total: -13.53 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.12 Total: -49.32 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.51 -10.17 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.327 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds