Wall clock time and date at job start Tue Mar 31 2020 16:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.30159 * 2 1 4 4 C 1.54385 * 110.34376 * 237.71192 * 2 1 3 5 5 N 1.48138 * 104.62151 * 264.99604 * 4 2 1 6 6 C 1.34775 * 127.84285 * 140.40896 * 5 4 2 7 7 O 1.21271 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00039 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.46653 * 40.01086 * 8 6 5 10 10 N 1.46896 * 109.46878 * 160.00397 * 8 6 5 11 11 C 1.52995 * 109.47466 * 280.00761 * 8 6 5 12 12 C 1.52999 * 109.47220 * 175.00217 * 11 8 6 13 13 C 1.50696 * 109.47248 * 180.02562 * 12 11 8 14 14 H 1.07998 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00092 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47295 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47385 * 119.99642 * 17 15 13 20 20 H 1.48509 * 109.47223 * 239.99487 * 17 15 13 21 21 C 1.48152 * 104.32060 * 320.41290 * 5 4 2 22 22 C 1.54284 * 110.34646 * 122.17582 * 2 1 3 23 23 H 1.09002 * 110.34125 * 359.89508 * 22 2 1 24 24 C 1.50701 * 110.34106 * 237.74718 * 22 2 1 25 25 C 1.38230 * 120.00561 * 109.70930 * 24 22 2 26 26 C 1.38232 * 120.00551 * 179.97438 * 25 24 22 27 27 C 1.38237 * 119.99798 * 359.97438 * 26 25 24 28 28 C 1.38239 * 120.00068 * 0.27488 * 27 26 25 29 29 C 1.38237 * 119.99855 * 289.68448 * 24 22 2 30 30 H 1.09001 * 109.46840 * 297.82300 * 1 2 3 31 31 H 1.08989 * 109.47411 * 57.82477 * 1 2 3 32 32 H 1.09007 * 109.46690 * 177.82577 * 1 2 3 33 33 H 1.09000 * 109.47008 * 189.08897 * 3 2 1 34 34 H 1.08999 * 109.46963 * 309.08477 * 3 2 1 35 35 H 1.08996 * 109.47264 * 69.08449 * 3 2 1 36 36 H 1.09001 * 110.40770 * 23.77896 * 4 2 1 37 37 H 1.09001 * 110.41007 * 146.20785 * 4 2 1 38 38 H 1.00901 * 111.00276 * 60.00198 * 10 8 6 39 39 H 1.00902 * 111.00166 * 183.95591 * 10 8 6 40 40 H 1.09005 * 109.46985 * 294.99947 * 11 8 6 41 41 H 1.08999 * 109.47274 * 54.99778 * 11 8 6 42 42 H 1.09005 * 109.46921 * 299.99769 * 12 11 8 43 43 H 1.08999 * 109.47356 * 59.99610 * 12 11 8 44 44 H 0.96995 * 120.00292 * 179.97438 * 16 15 13 45 45 H 1.09003 * 110.40663 * 280.80361 * 21 5 4 46 46 H 1.09001 * 110.40516 * 158.37082 * 21 5 4 47 47 H 1.08008 * 119.99854 * 359.97438 * 25 24 22 48 48 H 1.07994 * 120.00451 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00092 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00423 * 179.72450 * 28 27 26 51 51 H 1.08007 * 120.00037 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 6 2.0667 -0.7732 -1.2237 5 7 2.3140 -2.1445 -0.7206 6 6 2.0774 -3.3118 -1.3513 7 8 1.6062 -3.3126 -2.4687 8 6 2.3994 -4.6161 -0.6684 9 1 2.1253 -4.5521 0.3847 10 7 1.6436 -5.7023 -1.3060 11 6 3.8983 -4.8985 -0.7890 12 6 4.2461 -6.1565 0.0093 13 6 5.7225 -6.4343 -0.1090 14 1 6.3499 -5.7794 -0.6953 15 6 6.2721 -7.5253 0.5304 16 7 5.5080 -8.3231 1.2440 17 14 8.1020 -7.8700 0.3832 18 1 8.7343 -6.8319 -0.4698 19 1 8.7205 -7.8462 1.7331 20 1 8.3061 -9.2066 -0.2313 21 6 2.8803 -1.9415 0.6333 22 6 2.0664 -0.7703 1.2244 23 1 1.2399 -1.1472 1.8269 24 6 2.9556 0.1192 2.0546 25 6 2.5313 0.5565 3.2953 26 6 3.3471 1.3720 4.0571 27 6 4.5876 1.7498 3.5782 28 6 5.0099 1.3168 2.3351 29 6 4.1959 0.4975 1.5755 30 1 -0.3633 0.4797 0.9089 31 1 -0.3633 0.5472 -0.8697 32 1 -0.3633 -1.0270 -0.0390 33 1 3.1386 1.4236 -0.1623 34 1 1.5793 2.0005 -0.7977 35 1 1.8429 1.9030 0.9599 36 1 1.3223 -0.7890 -2.0198 37 1 2.9949 -0.3256 -1.5790 38 1 1.8800 -5.7820 -2.2837 39 1 1.7924 -6.5770 -0.8255 40 1 4.1561 -5.0504 -1.8372 41 1 4.4604 -4.0515 -0.3957 42 1 3.9882 -6.0045 1.0574 43 1 3.6839 -7.0035 -0.3841 44 1 5.8945 -9.0908 1.6935 45 1 3.9355 -1.6763 0.5680 46 1 2.7496 -2.8387 1.2383 47 1 1.5622 0.2610 3.6697 48 1 3.0154 1.7140 5.0262 49 1 5.2249 2.3873 4.1731 50 1 5.9772 1.6156 1.9590 51 1 4.5275 0.1559 0.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:09 Heat of formation + Delta-G solvation = -40.218966 kcal Electronic energy + Delta-G solvation = -29093.700100 eV Core-core repulsion = 25377.217398 eV Total energy + Delta-G solvation = -3716.482702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88245 -40.38582 -38.72996 -37.07900 -34.93521 -34.74294 -32.95660 -31.76890 -31.72019 -29.47629 -28.89820 -28.03666 -27.13830 -25.31583 -24.71624 -23.25871 -22.38883 -21.96394 -20.35386 -19.79238 -18.78890 -18.23254 -17.75519 -16.97126 -16.69147 -16.44694 -16.05512 -15.97910 -15.76389 -15.41686 -15.30363 -14.88637 -14.79258 -14.54511 -14.49327 -14.13430 -14.04385 -13.81926 -13.58735 -13.48731 -13.28500 -13.07322 -12.93704 -12.75537 -12.67288 -12.51543 -12.45067 -12.19622 -11.87772 -11.84509 -11.75524 -11.70958 -11.51691 -11.44569 -11.30243 -10.77089 -10.57496 -9.83069 -9.69951 -9.65148 -9.45296 -8.22313 -6.32663 0.51180 0.59530 1.37910 1.39503 1.50990 1.54745 1.84222 2.39188 2.91611 3.11445 3.28656 3.58360 3.61054 3.72815 3.75195 4.00534 4.03930 4.07782 4.18068 4.19512 4.26068 4.31071 4.36974 4.40129 4.59136 4.63243 4.66836 4.70246 4.74774 4.77187 4.81593 4.82792 4.95488 4.99308 5.04283 5.06744 5.09254 5.23138 5.24007 5.26857 5.32828 5.44540 5.47559 5.62587 5.67519 5.72780 5.78455 5.78706 6.03099 6.19798 6.20021 6.43688 6.45401 6.82198 7.09368 7.36526 8.88740 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010244 B = 0.003502 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.717071 B = 7994.349736 C = 9928.116515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.132 4.132 4 C 0.108 3.892 5 N -0.619 5.619 6 C 0.546 3.454 7 O -0.573 6.573 8 C 0.086 3.914 9 H 0.103 0.897 10 N -0.829 5.829 11 C -0.118 4.118 12 C 0.033 3.967 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.100 3.900 22 C -0.049 4.049 23 H 0.096 0.904 24 C -0.069 4.069 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.128 4.128 29 C -0.121 4.121 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.344 0.656 39 H 0.354 0.646 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.001 0.999 43 H 0.003 0.997 44 H 0.264 0.736 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 23.984 4.650 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.014 4.014 5 N -0.352 5.352 6 C 0.336 3.664 7 O -0.452 6.452 8 C -0.029 4.029 9 H 0.121 0.879 10 N -0.361 5.361 11 C -0.158 4.158 12 C -0.004 4.004 13 C -0.582 4.582 14 H 0.072 0.928 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.023 4.023 22 C -0.068 4.068 23 H 0.114 0.886 24 C -0.069 4.069 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.153 0.847 50 H 0.150 0.850 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.337 24.140 4.287 25.592 hybrid contribution 1.902 -1.214 -0.230 2.268 sum -5.435 22.926 4.057 23.908 Atomic orbital electron populations 1.21836 0.92969 1.01331 1.02912 1.21421 0.96414 0.95799 0.92280 1.21998 1.01304 0.93163 1.02443 1.22632 1.01050 0.80522 0.97192 1.48893 1.62786 1.05311 1.18206 1.20353 0.76249 0.84632 0.85207 1.90614 1.46382 1.87415 1.20786 1.21336 0.93027 0.89399 0.99153 0.87890 1.58753 1.61067 1.08537 1.07741 1.22100 0.93746 0.99902 1.00041 1.18942 0.95276 0.92003 0.94213 1.21610 0.95028 1.10709 1.30816 0.92819 1.25840 1.02631 0.95880 0.94770 1.70062 1.37223 1.16101 1.33182 0.85504 0.79939 0.78140 0.78118 1.19018 1.20188 1.20513 1.22772 0.98134 0.99237 0.82147 1.21163 0.97001 0.93232 0.95375 0.88601 1.19523 0.94594 0.98033 0.94775 1.21224 1.00588 0.98370 0.93903 1.21384 0.94501 0.97997 1.00416 1.21419 0.96799 1.00451 0.96221 1.21352 1.00127 0.98014 0.95083 1.21123 0.94120 0.98488 1.00134 0.90863 0.91753 0.94091 0.91739 0.91900 0.91631 0.91102 0.90317 0.84264 0.83129 0.93772 0.91962 0.98035 0.97900 0.92705 0.89914 0.90081 0.85013 0.84466 0.84663 0.85028 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.23 71.98 0.59 -1.60 16 2 C -0.06 -0.99 1.02 -51.27 -0.05 -1.04 16 3 C -0.13 -1.85 7.20 71.98 0.52 -1.33 16 4 C 0.11 2.44 6.14 86.53 0.53 2.97 16 5 N -0.62 -17.09 3.32 -807.98 -2.68 -19.77 16 6 C 0.55 19.16 7.16 87.66 0.63 19.79 16 7 O -0.57 -23.64 16.52 -3.00 -0.05 -23.69 16 8 C 0.09 3.06 2.64 44.17 0.12 3.18 16 9 H 0.10 3.49 6.98 -2.39 -0.02 3.47 16 10 N -0.83 -29.91 8.94 -171.81 -1.54 -31.45 16 11 C -0.12 -4.77 4.78 30.59 0.15 -4.63 16 12 C 0.03 1.63 4.74 29.85 0.14 1.77 16 13 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 15 C 0.01 0.41 5.46 84.66 0.46 0.87 16 16 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 17 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 C 0.10 2.30 6.02 86.53 0.52 2.82 16 22 C -0.05 -0.87 2.93 -10.64 -0.03 -0.90 16 23 H 0.10 1.66 7.55 -2.39 -0.02 1.64 16 24 C -0.07 -1.17 3.23 -19.87 -0.06 -1.23 16 25 C -0.12 -1.90 9.59 22.27 0.21 -1.69 16 26 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 27 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 28 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 29 C -0.12 -2.08 6.49 22.27 0.14 -1.93 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.92 5.61 -2.39 -0.01 0.91 16 34 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 35 H 0.06 0.92 7.10 -2.39 -0.02 0.90 16 36 H 0.07 1.79 7.60 -2.39 -0.02 1.77 16 37 H 0.08 1.62 7.72 -2.39 -0.02 1.60 16 38 H 0.34 12.62 8.58 -89.69 -0.77 11.85 16 39 H 0.35 12.76 7.55 -89.69 -0.68 12.08 16 40 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 2.41 7.83 -2.39 -0.02 2.39 16 42 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 43 H 0.00 0.14 6.87 -2.39 -0.02 0.13 16 44 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 45 H 0.08 1.88 6.09 -2.39 -0.01 1.87 16 46 H 0.08 1.99 6.74 -2.39 -0.02 1.98 16 47 H 0.13 1.66 8.01 -2.91 -0.02 1.64 16 48 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 50 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.12 2.06 6.52 -2.91 -0.02 2.04 16 Total: -1.00 -66.87 397.60 2.30 -64.56 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.52 Total: 36.70 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 4.77 Total: -17.82 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.93 Total: -105.24 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.87 2.30 -64.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.345 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds