Wall clock time and date at job start Tue Mar 31 2020 16:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.38342 * 2 1 4 4 C 1.54387 * 110.34434 * 122.23105 * 2 1 3 5 5 N 1.48146 * 104.61351 * 95.00628 * 4 2 1 6 6 C 1.34781 * 127.83427 * 219.58674 * 5 4 2 7 7 O 1.21287 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99769 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47402 * 319.99774 * 8 6 5 10 10 N 1.46902 * 109.47146 * 199.99836 * 8 6 5 11 11 C 1.53001 * 109.47018 * 79.99937 * 8 6 5 12 12 C 1.53005 * 109.47002 * 184.99853 * 11 8 6 13 13 C 1.50708 * 109.47026 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99645 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99942 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47225 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46788 * 120.00063 * 17 15 13 20 20 H 1.48498 * 109.46981 * 239.99787 * 17 15 13 21 21 C 1.48138 * 104.32766 * 39.84463 * 5 4 2 22 22 C 1.54287 * 110.34042 * 237.77209 * 2 1 3 23 23 H 1.08999 * 110.34461 * 359.97438 * 22 2 1 24 24 C 1.50699 * 110.34231 * 122.25765 * 22 2 1 25 25 C 1.38237 * 120.00073 * 71.40612 * 24 22 2 26 26 C 1.38236 * 120.00176 * 179.74759 * 25 24 22 27 27 C 1.38241 * 119.99628 * 0.54879 * 26 25 24 28 28 C 1.38237 * 119.99986 * 359.70524 * 27 26 25 29 29 C 1.38230 * 120.00000 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47030 * 299.21783 * 1 2 3 31 31 H 1.08994 * 109.47405 * 59.22064 * 1 2 3 32 32 H 1.09005 * 109.47001 * 179.22059 * 1 2 3 33 33 H 1.09003 * 109.46823 * 174.57384 * 3 2 1 34 34 H 1.08994 * 109.47662 * 294.57204 * 3 2 1 35 35 H 1.08996 * 109.47116 * 54.57552 * 3 2 1 36 36 H 1.09002 * 110.40709 * 336.22560 * 4 2 1 37 37 H 1.08999 * 110.40598 * 213.78917 * 4 2 1 38 38 H 1.00900 * 110.99840 * 299.99868 * 10 8 6 39 39 H 1.00895 * 110.99841 * 63.95353 * 10 8 6 40 40 H 1.09004 * 109.47367 * 304.99758 * 11 8 6 41 41 H 1.09005 * 109.47474 * 65.00103 * 11 8 6 42 42 H 1.08998 * 109.47165 * 299.99736 * 12 11 8 43 43 H 1.08991 * 109.47193 * 60.00130 * 12 11 8 44 44 H 0.97001 * 119.99539 * 180.02562 * 16 15 13 45 45 H 1.09004 * 110.40456 * 78.93750 * 21 5 4 46 46 H 1.08994 * 110.41042 * 201.36977 * 21 5 4 47 47 H 1.08000 * 120.00297 * 359.97438 * 25 24 22 48 48 H 1.07993 * 120.00474 * 180.27389 * 26 25 24 49 49 H 1.07991 * 119.99950 * 179.72988 * 27 26 25 50 50 H 1.08002 * 119.99865 * 180.02562 * 28 27 26 51 51 H 1.08002 * 120.00255 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0668 -0.7720 1.2245 5 7 2.3140 -2.1438 0.7225 6 6 2.0774 -3.3105 1.3544 7 8 1.6063 -3.3102 2.4721 8 6 2.3994 -4.6154 0.6728 9 1 2.1254 -4.5525 -0.3803 10 7 1.6435 -5.7011 1.3114 11 6 3.8983 -4.8977 0.7937 12 6 4.2461 -6.1565 -0.0034 13 6 5.7224 -6.4349 0.1163 14 1 6.3496 -5.7798 0.7026 15 6 6.2721 -7.5260 -0.5228 16 7 5.5083 -8.3234 -1.2372 17 14 8.1021 -7.8707 -0.3750 18 1 8.7341 -6.8323 0.4779 19 1 8.3059 -9.2070 0.2399 20 1 8.7207 -7.8473 -1.7248 21 6 2.8862 -1.9420 -0.6289 22 6 2.0663 -0.7715 -1.2238 23 1 1.2398 -1.1508 -1.8246 24 6 2.9555 0.1172 -2.0548 25 6 4.2051 0.4774 -1.5860 26 6 5.0229 1.2883 -2.3505 27 6 4.5866 1.7483 -3.5790 28 6 3.3349 1.3923 -4.0454 29 6 2.5194 0.5769 -3.2833 30 1 -0.3633 0.5016 0.8969 31 1 -0.3634 0.5259 -0.8828 32 1 -0.3633 -1.0276 -0.0140 33 1 3.1485 1.4184 0.0972 34 1 1.7890 1.9237 -0.9345 35 1 1.6311 1.9822 0.8374 36 1 1.3223 -0.7871 2.0206 37 1 2.9950 -0.3241 1.5793 38 1 1.8801 -5.7798 2.2891 39 1 0.6505 -5.5709 1.1890 40 1 4.4605 -4.0511 0.3995 41 1 4.1562 -5.0487 1.8420 42 1 3.6840 -7.0031 0.3908 43 1 3.9883 -6.0056 -1.0516 44 1 5.8951 -9.0912 -1.6864 45 1 3.9404 -1.6740 -0.5591 46 1 2.7607 -2.8406 -1.2328 47 1 4.5440 0.1223 -0.6239 48 1 6.0008 1.5661 -1.9862 49 1 5.2237 2.3853 -4.1743 50 1 2.9942 1.7514 -5.0054 51 1 1.5413 0.2992 -3.6476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:13 Heat of formation + Delta-G solvation = -21.358572 kcal Electronic energy + Delta-G solvation = -29090.339595 eV Core-core repulsion = 25374.674741 eV Total energy + Delta-G solvation = -3715.664854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99563 -39.37808 -37.87649 -35.19129 -33.87068 -32.78756 -32.23645 -31.15097 -30.09840 -28.60928 -27.58158 -27.31238 -25.59502 -24.25329 -23.11488 -22.58872 -21.42530 -20.32678 -19.29642 -18.86365 -17.17313 -17.07070 -16.29883 -15.80357 -15.69627 -15.43050 -15.22225 -15.08679 -14.42439 -14.23080 -14.18049 -13.88003 -13.78738 -13.54204 -13.39040 -13.02916 -12.84524 -12.45785 -12.36776 -12.26762 -12.05871 -11.99172 -11.74163 -11.53137 -11.49205 -11.23088 -11.01644 -10.90766 -10.79354 -10.78189 -10.63627 -10.50768 -10.09489 -9.78302 -9.36551 -9.06248 -8.98056 -8.83138 -8.67284 -8.34935 -8.20206 -5.93212 -3.95164 1.15635 1.22631 2.76794 3.01015 3.34210 3.41831 3.45669 3.56671 4.16717 4.35971 4.41377 4.50696 4.71353 4.74016 4.81058 4.84851 4.94066 4.98296 5.02225 5.07858 5.12642 5.31100 5.39339 5.41183 5.42527 5.45909 5.46854 5.54133 5.63112 5.67119 5.71103 5.77409 5.82200 5.85122 5.86437 5.93893 5.95706 6.03859 6.21109 6.31779 6.34685 6.44210 6.45251 6.67148 6.81632 7.09133 7.41072 7.62076 7.76887 7.80005 7.96805 8.13720 8.28048 8.49286 9.12853 9.68038 11.17743 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003506 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.815121 B = 7984.977650 C = 9930.169336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.139 4.139 4 C 0.109 3.891 5 N -0.620 5.620 6 C 0.505 3.495 7 O -0.554 6.554 8 C 0.082 3.918 9 H 0.096 0.904 10 N -0.806 5.806 11 C -0.094 4.094 12 C 0.032 3.968 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.104 3.896 22 C -0.058 4.058 23 H 0.091 0.909 24 C -0.063 4.063 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.116 4.116 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.348 0.652 39 H 0.333 0.667 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 23.355 -3.395 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.014 4.014 5 N -0.354 5.354 6 C 0.294 3.706 7 O -0.432 6.432 8 C -0.033 4.033 9 H 0.114 0.886 10 N -0.334 5.334 11 C -0.133 4.133 12 C -0.005 4.005 13 C -0.559 4.559 14 H 0.070 0.930 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.019 4.019 22 C -0.077 4.077 23 H 0.109 0.891 24 C -0.063 4.063 25 C -0.129 4.129 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.535 22.554 -3.336 24.344 hybrid contribution 0.690 0.614 0.507 1.053 sum -7.845 23.168 -2.829 24.623 Atomic orbital electron populations 1.21842 0.93454 1.02050 1.01864 1.21478 0.96117 0.95468 0.93852 1.22058 1.01481 0.94251 1.01881 1.22449 1.00702 0.81971 0.96303 1.49099 1.63263 1.05314 1.17687 1.22490 0.76312 0.85576 0.86259 1.90650 1.45843 1.87186 1.19553 1.21815 0.98788 0.84211 0.98533 0.88578 1.59026 1.09829 1.43373 1.21179 1.21649 0.88319 1.01554 1.01733 1.19011 0.95804 0.91413 0.94275 1.21308 0.93948 1.10242 1.30428 0.92970 1.24982 0.97632 0.96216 0.95448 1.69987 1.34946 1.15589 1.32638 0.86611 0.85959 0.78162 0.77702 1.19859 1.21052 1.21096 1.22723 0.97560 0.98522 0.83145 1.21321 0.97149 0.94045 0.95183 0.89051 1.19567 0.94537 0.97684 0.94529 1.21051 0.93781 0.98173 0.99905 1.21137 0.99580 0.97994 0.94839 1.21134 0.96343 1.00422 0.96383 1.21105 0.94547 0.98413 0.99665 1.21012 0.99844 0.98282 0.94231 0.92381 0.92342 0.92435 0.91596 0.91977 0.92776 0.90071 0.91319 0.83816 0.85484 0.92897 0.92895 0.94687 0.96922 0.93172 0.90081 0.89192 0.85858 0.86106 0.86345 0.86264 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.24 37.16 0.31 -0.83 16 2 C -0.07 -0.61 1.02 -153.11 -0.16 -0.76 16 3 C -0.14 -1.10 7.20 37.16 0.27 -0.83 16 4 C 0.11 1.23 6.14 -2.41 -0.01 1.22 16 5 N -0.62 -8.32 3.31 -169.06 -0.56 -8.88 16 6 C 0.50 8.35 7.15 -10.98 -0.08 8.27 16 7 O -0.55 -10.64 16.52 5.55 0.09 -10.55 16 8 C 0.08 1.42 2.58 -68.86 -0.18 1.25 16 9 H 0.10 1.59 6.98 -51.93 -0.36 1.23 16 10 N -0.81 -13.95 8.44 -5.66 -0.05 -14.00 16 11 C -0.09 -1.94 4.78 -26.73 -0.13 -2.07 16 12 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.10 1.20 6.01 -2.20 -0.01 1.19 16 22 C -0.06 -0.54 2.95 -90.15 -0.27 -0.80 16 23 H 0.09 0.82 7.56 -51.93 -0.39 0.43 16 24 C -0.06 -0.57 3.29 -104.62 -0.34 -0.92 16 25 C -0.11 -1.03 6.47 -39.58 -0.26 -1.28 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 29 C -0.12 -1.00 9.59 -39.59 -0.38 -1.38 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 5.50 -51.93 -0.29 0.24 16 34 H 0.06 0.50 7.31 -51.93 -0.38 0.12 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 1.01 7.60 -51.93 -0.39 0.61 16 37 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 38 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 39 H 0.33 5.01 9.06 -39.29 -0.36 4.66 16 40 H 0.05 1.04 7.81 -51.93 -0.41 0.63 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.08 0.94 6.02 -51.93 -0.31 0.63 16 46 H 0.09 1.09 6.74 -51.93 -0.35 0.74 16 47 H 0.12 1.11 6.50 -52.49 -0.34 0.77 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.87 8.02 -52.49 -0.42 0.45 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -32.62 399.69 -10.25 -42.87 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.49 Total: 7.94 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.98 Total: -13.99 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.13 Total: -49.08 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.62 -10.25 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.513 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds