Wall clock time and date at job start Tue Mar 31 2020 16:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.38342 * 2 1 4 4 C 1.54387 * 110.34434 * 122.23105 * 2 1 3 5 5 N 1.48146 * 104.61351 * 95.00628 * 4 2 1 6 6 C 1.34781 * 127.83427 * 219.58674 * 5 4 2 7 7 O 1.21287 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99769 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47402 * 319.99774 * 8 6 5 10 10 N 1.46902 * 109.47146 * 199.99836 * 8 6 5 11 11 C 1.53001 * 109.47018 * 79.99937 * 8 6 5 12 12 C 1.53005 * 109.47002 * 184.99853 * 11 8 6 13 13 C 1.50708 * 109.47026 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99645 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99942 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99799 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47225 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46788 * 120.00063 * 17 15 13 20 20 H 1.48498 * 109.46981 * 239.99787 * 17 15 13 21 21 C 1.48138 * 104.32766 * 39.84463 * 5 4 2 22 22 C 1.54287 * 110.34042 * 237.77209 * 2 1 3 23 23 H 1.08999 * 110.34461 * 359.97438 * 22 2 1 24 24 C 1.50699 * 110.34231 * 122.25765 * 22 2 1 25 25 C 1.38237 * 120.00073 * 71.40612 * 24 22 2 26 26 C 1.38236 * 120.00176 * 179.74759 * 25 24 22 27 27 C 1.38241 * 119.99628 * 0.54879 * 26 25 24 28 28 C 1.38237 * 119.99986 * 359.70524 * 27 26 25 29 29 C 1.38230 * 120.00000 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47030 * 299.21783 * 1 2 3 31 31 H 1.08994 * 109.47405 * 59.22064 * 1 2 3 32 32 H 1.09005 * 109.47001 * 179.22059 * 1 2 3 33 33 H 1.09003 * 109.46823 * 174.57384 * 3 2 1 34 34 H 1.08994 * 109.47662 * 294.57204 * 3 2 1 35 35 H 1.08996 * 109.47116 * 54.57552 * 3 2 1 36 36 H 1.09002 * 110.40709 * 336.22560 * 4 2 1 37 37 H 1.08999 * 110.40598 * 213.78917 * 4 2 1 38 38 H 1.00900 * 110.99840 * 299.99868 * 10 8 6 39 39 H 1.00895 * 110.99841 * 63.95353 * 10 8 6 40 40 H 1.09004 * 109.47367 * 304.99758 * 11 8 6 41 41 H 1.09005 * 109.47474 * 65.00103 * 11 8 6 42 42 H 1.08998 * 109.47165 * 299.99736 * 12 11 8 43 43 H 1.08991 * 109.47193 * 60.00130 * 12 11 8 44 44 H 0.97001 * 119.99539 * 180.02562 * 16 15 13 45 45 H 1.09004 * 110.40456 * 78.93750 * 21 5 4 46 46 H 1.08994 * 110.41042 * 201.36977 * 21 5 4 47 47 H 1.08000 * 120.00297 * 359.97438 * 25 24 22 48 48 H 1.07993 * 120.00474 * 180.27389 * 26 25 24 49 49 H 1.07991 * 119.99950 * 179.72988 * 27 26 25 50 50 H 1.08002 * 119.99865 * 180.02562 * 28 27 26 51 51 H 1.08002 * 120.00255 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0668 -0.7720 1.2245 5 7 2.3140 -2.1438 0.7225 6 6 2.0774 -3.3105 1.3544 7 8 1.6063 -3.3102 2.4721 8 6 2.3994 -4.6154 0.6728 9 1 2.1254 -4.5525 -0.3803 10 7 1.6435 -5.7011 1.3114 11 6 3.8983 -4.8977 0.7937 12 6 4.2461 -6.1565 -0.0034 13 6 5.7224 -6.4349 0.1163 14 1 6.3496 -5.7798 0.7026 15 6 6.2721 -7.5260 -0.5228 16 7 5.5083 -8.3234 -1.2372 17 14 8.1021 -7.8707 -0.3750 18 1 8.7341 -6.8323 0.4779 19 1 8.3059 -9.2070 0.2399 20 1 8.7207 -7.8473 -1.7248 21 6 2.8862 -1.9420 -0.6289 22 6 2.0663 -0.7715 -1.2238 23 1 1.2398 -1.1508 -1.8246 24 6 2.9555 0.1172 -2.0548 25 6 4.2051 0.4774 -1.5860 26 6 5.0229 1.2883 -2.3505 27 6 4.5866 1.7483 -3.5790 28 6 3.3349 1.3923 -4.0454 29 6 2.5194 0.5769 -3.2833 30 1 -0.3633 0.5016 0.8969 31 1 -0.3634 0.5259 -0.8828 32 1 -0.3633 -1.0276 -0.0140 33 1 3.1485 1.4184 0.0972 34 1 1.7890 1.9237 -0.9345 35 1 1.6311 1.9822 0.8374 36 1 1.3223 -0.7871 2.0206 37 1 2.9950 -0.3241 1.5793 38 1 1.8801 -5.7798 2.2891 39 1 0.6505 -5.5709 1.1890 40 1 4.4605 -4.0511 0.3995 41 1 4.1562 -5.0487 1.8420 42 1 3.6840 -7.0031 0.3908 43 1 3.9883 -6.0056 -1.0516 44 1 5.8951 -9.0912 -1.6864 45 1 3.9404 -1.6740 -0.5591 46 1 2.7607 -2.8406 -1.2328 47 1 4.5440 0.1223 -0.6239 48 1 6.0008 1.5661 -1.9862 49 1 5.2237 2.3853 -4.1743 50 1 2.9942 1.7514 -5.0054 51 1 1.5413 0.2992 -3.6476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:12 Heat of formation + Delta-G solvation = -40.394374 kcal Electronic energy + Delta-G solvation = -29091.165049 eV Core-core repulsion = 25374.674741 eV Total energy + Delta-G solvation = -3716.490308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91145 -40.45603 -38.75819 -36.82783 -34.93298 -34.74797 -32.96306 -31.95809 -31.77864 -29.46253 -28.82478 -28.06251 -27.17631 -25.24215 -24.61903 -23.26867 -22.34867 -21.93627 -20.39983 -19.81647 -18.55820 -18.23564 -17.77275 -16.95433 -16.94490 -16.61543 -16.39813 -16.02745 -15.86146 -15.33539 -15.03359 -15.00589 -14.76648 -14.57544 -14.29485 -14.08284 -13.96941 -13.81791 -13.56865 -13.46526 -13.30976 -13.06944 -12.83083 -12.74764 -12.53314 -12.48728 -12.27153 -12.22052 -11.89651 -11.79124 -11.73530 -11.66449 -11.52906 -11.46462 -11.25824 -11.00692 -10.49838 -9.84698 -9.68659 -9.66873 -9.46099 -8.14098 -6.24319 0.50385 0.58771 1.40804 1.41748 1.44370 1.54566 1.87179 2.44297 2.90840 3.19072 3.27276 3.53080 3.59847 3.61246 3.76549 3.98280 4.02407 4.06568 4.16669 4.24472 4.25931 4.30750 4.35931 4.38558 4.57547 4.66250 4.69383 4.72421 4.74094 4.76410 4.79855 4.89293 4.93742 4.97298 5.04819 5.07329 5.20223 5.22202 5.22557 5.25200 5.30767 5.45099 5.56384 5.66730 5.72216 5.77339 5.82373 5.97113 6.05734 6.19333 6.29520 6.40507 6.47427 6.93619 6.99073 7.43840 8.97369 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003506 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.815121 B = 7984.977650 C = 9930.169336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.133 4.133 4 C 0.105 3.895 5 N -0.615 5.615 6 C 0.508 3.492 7 O -0.584 6.584 8 C 0.090 3.910 9 H 0.105 0.895 10 N -0.817 5.817 11 C -0.079 4.079 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.276 1.276 21 C 0.098 3.902 22 C -0.048 4.048 23 H 0.097 0.903 24 C -0.069 4.069 25 C -0.121 4.121 26 C -0.128 4.128 27 C -0.131 4.131 28 C -0.125 4.125 29 C -0.122 4.122 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.346 0.654 39 H 0.347 0.653 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.006 0.994 43 H -0.006 1.006 44 H 0.262 0.738 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.121 0.879 48 H 0.131 0.869 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 25.317 -4.200 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.190 4.190 4 C -0.017 4.017 5 N -0.347 5.347 6 C 0.296 3.704 7 O -0.465 6.465 8 C -0.025 4.025 9 H 0.122 0.878 10 N -0.346 5.346 11 C -0.117 4.117 12 C 0.005 3.995 13 C -0.581 4.581 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.202 1.202 21 C -0.024 4.024 22 C -0.067 4.067 23 H 0.116 0.884 24 C -0.070 4.070 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.012 0.988 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.139 0.861 48 H 0.149 0.851 49 H 0.153 0.847 50 H 0.156 0.844 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.964 24.558 -4.164 26.150 hybrid contribution 0.511 0.037 0.708 0.874 sum -7.452 24.595 -3.456 25.930 Atomic orbital electron populations 1.21829 0.92876 1.01415 1.02868 1.21415 0.96445 0.95752 0.92269 1.21997 1.01378 0.93266 1.02378 1.22644 1.00980 0.80892 0.97204 1.49066 1.61895 1.05445 1.18295 1.22064 0.76536 0.86058 0.85775 1.90634 1.47524 1.87646 1.20653 1.21574 0.96631 0.85107 0.99213 0.87768 1.59001 1.10871 1.43662 1.21024 1.21360 0.90929 0.99467 0.99981 1.18802 0.94427 0.92655 0.93615 1.21726 0.95311 1.10563 1.30451 0.92745 1.25875 1.02623 0.95960 0.94960 1.70112 1.37172 1.16151 1.33468 0.85503 0.79968 0.78118 0.78077 1.18847 1.20640 1.20209 1.22883 0.98096 0.99337 0.82122 1.21236 0.96965 0.93185 0.95311 0.88444 1.19531 0.94538 0.98031 0.94888 1.21117 0.94097 0.98651 1.00075 1.21352 1.00102 0.97993 0.95158 1.21418 0.96717 1.00386 0.96359 1.21389 0.94461 0.98068 1.00373 1.21220 1.00578 0.98242 0.93983 0.91915 0.90827 0.93878 0.91736 0.91638 0.91985 0.91129 0.90531 0.84069 0.84027 0.91906 0.93993 0.97568 0.98802 0.92915 0.89891 0.89890 0.86101 0.85068 0.84672 0.84443 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.24 71.98 0.59 -1.43 16 2 C -0.06 -0.94 1.02 -51.27 -0.05 -0.99 16 3 C -0.13 -1.82 7.20 71.98 0.52 -1.30 16 4 C 0.11 2.29 6.14 86.53 0.53 2.82 16 5 N -0.61 -16.24 3.31 -807.17 -2.67 -18.91 16 6 C 0.51 16.81 7.15 87.66 0.63 17.43 16 7 O -0.58 -22.54 16.52 -3.05 -0.05 -22.59 16 8 C 0.09 3.17 2.58 44.17 0.11 3.28 16 9 H 0.10 3.47 6.98 -2.39 -0.02 3.45 16 10 N -0.82 -28.78 8.44 -171.81 -1.45 -30.23 16 11 C -0.08 -3.30 4.78 30.60 0.15 -3.15 16 12 C 0.04 2.22 4.86 29.85 0.15 2.37 16 13 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.00 0.21 5.46 84.65 0.46 0.68 16 16 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 17 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 C 0.10 2.20 6.01 86.68 0.52 2.73 16 22 C -0.05 -0.83 2.95 -10.49 -0.03 -0.86 16 23 H 0.10 1.59 7.56 -2.39 -0.02 1.57 16 24 C -0.07 -1.15 3.29 -19.87 -0.07 -1.22 16 25 C -0.12 -2.08 6.47 22.27 0.14 -1.93 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 27 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 28 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 29 C -0.12 -1.85 9.59 22.27 0.21 -1.63 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.92 5.50 -2.39 -0.01 0.91 16 34 H 0.06 0.89 7.31 -2.39 -0.02 0.87 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.71 7.60 -2.39 -0.02 1.69 16 37 H 0.08 1.56 7.78 -2.39 -0.02 1.54 16 38 H 0.35 12.43 8.58 -89.69 -0.77 11.66 16 39 H 0.35 10.51 9.06 -89.70 -0.81 9.69 16 40 H 0.06 2.46 7.81 -2.38 -0.02 2.44 16 41 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.08 1.87 6.02 -2.39 -0.01 1.85 16 46 H 0.08 1.99 6.74 -2.39 -0.02 1.97 16 47 H 0.12 2.05 6.50 -2.91 -0.02 2.03 16 48 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 49 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 50 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 51 H 0.13 1.60 8.02 -2.91 -0.02 1.58 16 Total: -1.00 -69.84 399.69 2.25 -67.59 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.65 Total: 33.04 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.77 Total: -19.06 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.84 Total: -105.63 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.84 2.25 -67.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.192 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds