Wall clock time and date at job start Tue Mar 31 2020 16:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.37437 * 2 1 4 4 C 1.54005 * 110.32606 * 237.81000 * 2 1 3 5 5 N 1.47487 * 107.08457 * 242.41596 * 4 2 1 6 6 C 1.34785 * 127.03246 * 154.52005 * 5 4 2 7 7 O 1.21280 * 119.99971 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99626 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.47437 * 319.99956 * 8 6 5 10 10 N 1.46904 * 109.46781 * 199.99763 * 8 6 5 11 11 C 1.53006 * 109.47316 * 80.00149 * 8 6 5 12 12 C 1.53006 * 109.47220 * 184.99908 * 11 8 6 13 13 C 1.50690 * 109.46928 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00321 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99831 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00167 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47280 * 60.00256 * 17 15 13 19 19 H 1.48500 * 109.47128 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46865 * 300.00339 * 17 15 13 21 21 C 1.48112 * 105.93387 * 334.55561 * 5 4 2 22 22 C 1.54621 * 110.32738 * 122.19229 * 2 1 3 23 23 H 1.09006 * 110.89574 * 22.32845 * 22 2 1 24 24 C 1.50700 * 110.73941 * 259.07823 * 22 2 1 25 25 C 1.38233 * 119.99883 * 105.31170 * 24 22 2 26 26 C 1.38237 * 119.99715 * 179.97438 * 25 24 22 27 27 C 1.38234 * 120.00015 * 359.97438 * 26 25 24 28 28 C 1.38231 * 120.00093 * 0.27064 * 27 26 25 29 29 C 1.38232 * 119.99769 * 285.33605 * 24 22 2 30 30 H 1.09002 * 109.46862 * 297.80930 * 1 2 3 31 31 H 1.08997 * 109.47241 * 57.80637 * 1 2 3 32 32 H 1.09004 * 109.47205 * 177.81296 * 1 2 3 33 33 H 1.08999 * 109.47497 * 184.52389 * 3 2 1 34 34 H 1.09000 * 109.47100 * 304.52653 * 3 2 1 35 35 H 1.09005 * 109.47102 * 64.52800 * 3 2 1 36 36 H 1.08994 * 109.91274 * 123.05299 * 4 2 1 37 37 H 1.09004 * 109.91200 * 1.77642 * 4 2 1 38 38 H 1.00901 * 110.99642 * 176.04713 * 10 8 6 39 39 H 1.00900 * 110.99706 * 299.99866 * 10 8 6 40 40 H 1.09000 * 109.46563 * 304.99499 * 11 8 6 41 41 H 1.08998 * 109.47003 * 64.99593 * 11 8 6 42 42 H 1.09000 * 109.46377 * 299.99709 * 12 11 8 43 43 H 1.09001 * 109.47211 * 59.99439 * 12 11 8 44 44 H 0.96997 * 120.00227 * 179.97438 * 16 15 13 45 45 H 1.09008 * 110.65974 * 280.85187 * 21 5 4 46 46 H 1.08999 * 110.80679 * 157.80742 * 21 5 4 47 47 H 1.07995 * 120.00316 * 0.02562 * 25 24 22 48 48 H 1.08003 * 119.99957 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.99756 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.00215 * 179.73180 * 28 27 26 51 51 H 1.08004 * 120.00077 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4342 0.0000 4 6 2.0650 -0.7693 -1.2222 5 7 2.8276 -1.9225 -0.7085 6 6 3.0613 -3.0887 -1.3425 7 8 2.6238 -3.2701 -2.4590 8 6 3.8661 -4.1670 -0.6641 9 1 4.6991 -3.7146 -0.1262 10 7 4.3840 -5.0999 -1.6738 11 6 2.9744 -4.9254 0.3212 12 6 3.8190 -5.9363 1.0996 13 6 2.9409 -6.6827 2.0704 14 1 1.8858 -6.4589 2.1264 15 6 3.4842 -7.6522 2.8865 16 7 4.7689 -7.9251 2.8180 17 14 2.3956 -8.5780 4.0894 18 1 1.3298 -9.2936 3.3430 19 1 3.2154 -9.5590 4.8450 20 1 1.7762 -7.6170 5.0372 21 6 3.2835 -1.5371 0.6471 22 6 2.0671 -0.7725 1.2270 23 1 1.3188 -1.4685 1.6064 24 6 2.5029 0.1814 2.3092 25 6 1.7224 0.3496 3.4377 26 6 2.1225 1.2242 4.4307 27 6 3.3032 1.9302 4.2954 28 6 4.0811 1.7658 3.1646 29 6 3.6828 0.8886 2.1732 30 1 -0.3633 0.4795 0.9090 31 1 -0.3633 0.5475 -0.8696 32 1 -0.3634 -1.0269 -0.0392 33 1 3.1495 1.4182 -0.0811 34 1 1.6431 1.9776 -0.8467 35 1 1.7748 1.9287 0.9278 36 1 2.7180 -0.1245 -1.8100 37 1 1.2333 -1.1175 -1.8348 38 1 4.9802 -5.7956 -1.2512 39 1 3.6304 -5.5328 -2.1864 40 1 2.5196 -4.2200 1.0167 41 1 2.1923 -5.4508 -0.2268 42 1 4.2738 -6.6416 0.4040 43 1 4.6011 -5.4108 1.6475 44 1 5.1512 -8.6068 3.3923 45 1 4.1553 -0.8853 0.5888 46 1 3.5044 -2.4201 1.2468 47 1 0.8006 -0.2029 3.5440 48 1 1.5125 1.3559 5.3122 49 1 3.6159 2.6132 5.0713 50 1 5.0014 2.3207 3.0569 51 1 4.2926 0.7572 1.2915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424173059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:15 Heat of formation + Delta-G solvation = -22.663678 kcal Electronic energy + Delta-G solvation = -29204.250746 eV Core-core repulsion = 25488.529298 eV Total energy + Delta-G solvation = -3715.721448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91983 -39.27962 -37.81126 -35.45476 -33.81640 -32.84333 -32.20265 -31.13882 -29.89451 -28.45798 -27.60662 -27.42807 -25.58783 -24.22706 -23.28750 -22.54090 -21.32325 -20.46076 -19.22113 -18.83733 -17.30178 -17.02345 -16.32051 -16.00034 -15.55713 -15.18197 -14.94328 -14.59215 -14.45343 -14.37072 -14.10992 -13.95403 -13.69080 -13.40251 -13.25991 -13.18895 -12.83479 -12.82734 -12.36974 -12.29661 -12.09787 -11.94734 -11.79346 -11.66634 -11.42161 -11.11379 -11.08335 -10.93922 -10.86926 -10.76157 -10.71861 -10.67859 -9.97754 -9.89824 -9.28824 -9.20129 -9.03382 -8.80570 -8.56168 -8.43789 -8.17761 -6.08452 -4.11613 1.19762 1.26817 2.92792 3.03619 3.28135 3.33113 3.35406 3.60800 4.20100 4.39116 4.45169 4.46842 4.75892 4.79782 4.84728 4.90365 4.93687 5.04796 5.12784 5.19114 5.20237 5.27765 5.33510 5.43984 5.46117 5.53674 5.56481 5.57534 5.63706 5.73159 5.73730 5.78790 5.82831 5.88131 5.91910 5.98727 5.99890 6.13230 6.27131 6.30171 6.37190 6.38066 6.49786 6.53975 6.85426 6.86906 7.45313 7.51746 7.61624 7.71033 7.88270 7.91610 8.30942 8.44396 8.93901 9.53203 11.02434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.003758 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.442103 B = 7448.207350 C = 9264.148866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.139 4.139 4 C 0.115 3.885 5 N -0.623 5.623 6 C 0.545 3.455 7 O -0.538 6.538 8 C 0.079 3.921 9 H 0.095 0.905 10 N -0.831 5.831 11 C -0.137 4.137 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.101 3.899 22 C -0.057 4.057 23 H 0.095 0.905 24 C -0.061 4.061 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.354 0.646 39 H 0.345 0.655 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 22.243 -0.503 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.008 4.008 5 N -0.358 5.358 6 C 0.335 3.665 7 O -0.414 6.414 8 C -0.036 4.036 9 H 0.113 0.887 10 N -0.363 5.363 11 C -0.177 4.177 12 C -0.011 4.011 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.022 4.022 22 C -0.076 4.076 23 H 0.113 0.887 24 C -0.062 4.062 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.131 4.131 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.904 22.544 -1.445 22.925 hybrid contribution -1.043 -1.253 1.459 2.188 sum -4.947 21.290 0.014 21.857 Atomic orbital electron populations 1.21868 0.93324 1.02264 1.01993 1.21451 0.96242 0.95511 0.93616 1.22074 1.01074 0.94397 1.02071 1.22126 0.96047 0.87091 0.95579 1.48720 1.54500 1.14891 1.17673 1.20593 0.79702 0.80953 0.85252 1.90637 1.51921 1.79443 1.19350 1.21438 0.97297 0.92530 0.92378 0.88719 1.58743 1.25293 1.24401 1.27864 1.22394 0.98858 0.99163 0.97252 1.19090 0.94825 0.92789 0.94440 1.21125 0.94922 1.19825 1.20327 0.92815 1.24996 0.94987 0.96944 0.97251 1.69935 1.11182 1.32583 1.39461 0.86662 0.80495 0.79691 0.81205 1.20225 1.21194 1.20223 1.22760 0.96117 1.00179 0.83159 1.21383 0.97945 0.95538 0.92774 0.88655 1.19513 0.94880 0.96994 0.94770 1.21047 0.99808 0.98698 0.93528 1.21121 0.96845 0.96859 0.98831 1.21126 0.95253 1.00045 0.97934 1.21113 0.99702 0.98825 0.94138 1.21126 0.96308 0.96639 0.99060 0.92206 0.92315 0.92184 0.92070 0.92664 0.91702 0.91713 0.90547 0.83016 0.84138 0.92530 0.92697 0.96413 0.96374 0.92825 0.90632 0.88738 0.86069 0.86232 0.86389 0.86209 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.23 37.16 0.31 -0.90 16 2 C -0.07 -0.64 0.90 -153.14 -0.14 -0.78 16 3 C -0.14 -1.13 6.85 37.15 0.25 -0.87 16 4 C 0.11 1.36 6.29 -2.98 -0.02 1.34 16 5 N -0.62 -8.80 3.29 -169.77 -0.56 -9.35 16 6 C 0.55 9.58 7.14 -10.99 -0.08 9.51 16 7 O -0.54 -11.03 16.59 5.56 0.09 -10.94 16 8 C 0.08 1.39 2.44 -68.86 -0.17 1.22 16 9 H 0.09 1.61 7.56 -51.93 -0.39 1.21 16 10 N -0.83 -14.78 8.94 -5.65 -0.05 -14.83 16 11 C -0.14 -2.73 4.62 -26.73 -0.12 -2.85 16 12 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 13 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.10 1.21 5.98 -2.13 -0.01 1.20 16 22 C -0.06 -0.60 2.79 -89.90 -0.25 -0.85 16 23 H 0.10 1.08 7.77 -51.93 -0.40 0.67 16 24 C -0.06 -0.60 3.68 -104.63 -0.39 -0.98 16 25 C -0.11 -1.09 9.69 -39.58 -0.38 -1.47 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.13 -1.08 10.05 -39.59 -0.40 -1.47 16 28 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 29 C -0.11 -1.04 6.81 -39.58 -0.27 -1.31 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.49 6.26 -51.93 -0.32 0.16 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.55 6.65 -51.93 -0.35 0.20 16 36 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 37 H 0.08 0.99 7.59 -51.93 -0.39 0.60 16 38 H 0.35 6.26 7.55 -39.29 -0.30 5.96 16 39 H 0.35 6.21 8.58 -39.29 -0.34 5.87 16 40 H 0.06 1.09 6.99 -51.93 -0.36 0.72 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.08 0.80 5.94 -51.92 -0.31 0.49 16 46 H 0.09 1.27 6.02 -51.93 -0.31 0.95 16 47 H 0.12 1.07 8.05 -52.49 -0.42 0.65 16 48 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 51 H 0.12 1.03 5.29 -52.48 -0.28 0.75 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -31.45 395.68 -10.12 -41.57 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.28 Total: 10.29 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.00 Total: -13.69 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.13 Total: -49.41 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.45 -10.12 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.907 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds