Wall clock time and date at job start Tue Mar 31 2020 16:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 110.37437 * 2 1 4 4 C 1.54005 * 110.32606 * 237.81000 * 2 1 3 5 5 N 1.47487 * 107.08457 * 242.41596 * 4 2 1 6 6 C 1.34785 * 127.03246 * 154.52005 * 5 4 2 7 7 O 1.21280 * 119.99971 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.99626 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.47437 * 319.99956 * 8 6 5 10 10 N 1.46904 * 109.46781 * 199.99763 * 8 6 5 11 11 C 1.53006 * 109.47316 * 80.00149 * 8 6 5 12 12 C 1.53006 * 109.47220 * 184.99908 * 11 8 6 13 13 C 1.50690 * 109.46928 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00321 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99831 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00167 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47280 * 60.00256 * 17 15 13 19 19 H 1.48500 * 109.47128 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46865 * 300.00339 * 17 15 13 21 21 C 1.48112 * 105.93387 * 334.55561 * 5 4 2 22 22 C 1.54621 * 110.32738 * 122.19229 * 2 1 3 23 23 H 1.09006 * 110.89574 * 22.32845 * 22 2 1 24 24 C 1.50700 * 110.73941 * 259.07823 * 22 2 1 25 25 C 1.38233 * 119.99883 * 105.31170 * 24 22 2 26 26 C 1.38237 * 119.99715 * 179.97438 * 25 24 22 27 27 C 1.38234 * 120.00015 * 359.97438 * 26 25 24 28 28 C 1.38231 * 120.00093 * 0.27064 * 27 26 25 29 29 C 1.38232 * 119.99769 * 285.33605 * 24 22 2 30 30 H 1.09002 * 109.46862 * 297.80930 * 1 2 3 31 31 H 1.08997 * 109.47241 * 57.80637 * 1 2 3 32 32 H 1.09004 * 109.47205 * 177.81296 * 1 2 3 33 33 H 1.08999 * 109.47497 * 184.52389 * 3 2 1 34 34 H 1.09000 * 109.47100 * 304.52653 * 3 2 1 35 35 H 1.09005 * 109.47102 * 64.52800 * 3 2 1 36 36 H 1.08994 * 109.91274 * 123.05299 * 4 2 1 37 37 H 1.09004 * 109.91200 * 1.77642 * 4 2 1 38 38 H 1.00901 * 110.99642 * 176.04713 * 10 8 6 39 39 H 1.00900 * 110.99706 * 299.99866 * 10 8 6 40 40 H 1.09000 * 109.46563 * 304.99499 * 11 8 6 41 41 H 1.08998 * 109.47003 * 64.99593 * 11 8 6 42 42 H 1.09000 * 109.46377 * 299.99709 * 12 11 8 43 43 H 1.09001 * 109.47211 * 59.99439 * 12 11 8 44 44 H 0.96997 * 120.00227 * 179.97438 * 16 15 13 45 45 H 1.09008 * 110.65974 * 280.85187 * 21 5 4 46 46 H 1.08999 * 110.80679 * 157.80742 * 21 5 4 47 47 H 1.07995 * 120.00316 * 0.02562 * 25 24 22 48 48 H 1.08003 * 119.99957 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.99756 * 180.02562 * 27 26 25 50 50 H 1.08000 * 120.00215 * 179.73180 * 28 27 26 51 51 H 1.08004 * 120.00077 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4342 0.0000 4 6 2.0650 -0.7693 -1.2222 5 7 2.8276 -1.9225 -0.7085 6 6 3.0613 -3.0887 -1.3425 7 8 2.6238 -3.2701 -2.4590 8 6 3.8661 -4.1670 -0.6641 9 1 4.6991 -3.7146 -0.1262 10 7 4.3840 -5.0999 -1.6738 11 6 2.9744 -4.9254 0.3212 12 6 3.8190 -5.9363 1.0996 13 6 2.9409 -6.6827 2.0704 14 1 1.8858 -6.4589 2.1264 15 6 3.4842 -7.6522 2.8865 16 7 4.7689 -7.9251 2.8180 17 14 2.3956 -8.5780 4.0894 18 1 1.3298 -9.2936 3.3430 19 1 3.2154 -9.5590 4.8450 20 1 1.7762 -7.6170 5.0372 21 6 3.2835 -1.5371 0.6471 22 6 2.0671 -0.7725 1.2270 23 1 1.3188 -1.4685 1.6064 24 6 2.5029 0.1814 2.3092 25 6 1.7224 0.3496 3.4377 26 6 2.1225 1.2242 4.4307 27 6 3.3032 1.9302 4.2954 28 6 4.0811 1.7658 3.1646 29 6 3.6828 0.8886 2.1732 30 1 -0.3633 0.4795 0.9090 31 1 -0.3633 0.5475 -0.8696 32 1 -0.3634 -1.0269 -0.0392 33 1 3.1495 1.4182 -0.0811 34 1 1.6431 1.9776 -0.8467 35 1 1.7748 1.9287 0.9278 36 1 2.7180 -0.1245 -1.8100 37 1 1.2333 -1.1175 -1.8348 38 1 4.9802 -5.7956 -1.2512 39 1 3.6304 -5.5328 -2.1864 40 1 2.5196 -4.2200 1.0167 41 1 2.1923 -5.4508 -0.2268 42 1 4.2738 -6.6416 0.4040 43 1 4.6011 -5.4108 1.6475 44 1 5.1512 -8.6068 3.3923 45 1 4.1553 -0.8853 0.5888 46 1 3.5044 -2.4201 1.2468 47 1 0.8006 -0.2029 3.5440 48 1 1.5125 1.3559 5.3122 49 1 3.6159 2.6132 5.0713 50 1 5.0014 2.3207 3.0569 51 1 4.2926 0.7572 1.2915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424173059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:14 Heat of formation + Delta-G solvation = -40.558894 kcal Electronic energy + Delta-G solvation = -29205.026741 eV Core-core repulsion = 25488.529298 eV Total energy + Delta-G solvation = -3716.497443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88336 -40.39329 -38.75971 -37.09609 -34.94601 -34.76247 -32.97469 -31.80283 -31.72210 -29.37350 -28.88237 -28.16901 -27.12782 -25.34503 -24.70660 -23.24386 -22.32733 -21.99104 -20.34188 -19.85509 -18.78178 -18.20562 -17.77416 -17.14955 -16.55534 -16.49869 -16.09385 -15.88977 -15.75781 -15.42970 -15.30874 -14.99597 -14.74101 -14.60770 -14.38865 -14.13429 -13.99916 -13.85825 -13.68881 -13.45574 -13.35262 -13.09673 -12.90185 -12.71737 -12.67423 -12.55391 -12.54138 -12.18343 -11.83707 -11.79872 -11.74156 -11.71300 -11.54702 -11.43951 -11.33394 -10.77472 -10.56344 -9.82634 -9.70251 -9.66365 -9.44796 -8.21814 -6.32303 0.50863 0.59403 1.39126 1.40599 1.48432 1.53266 1.84387 2.39309 2.91350 3.11811 3.25744 3.60565 3.63993 3.68956 3.72668 3.99631 4.05255 4.06019 4.16709 4.18885 4.22039 4.31874 4.35491 4.38631 4.57390 4.62538 4.65174 4.68418 4.74129 4.76408 4.81599 4.83758 4.97292 4.98804 5.03666 5.07243 5.10209 5.23146 5.24765 5.26763 5.33111 5.44476 5.46132 5.62449 5.66972 5.72293 5.78185 5.78777 6.02866 6.19585 6.19841 6.42178 6.44236 6.82028 7.08631 7.36705 8.88836 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.003758 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.442103 B = 7448.207350 C = 9264.148866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.133 4.133 4 C 0.111 3.889 5 N -0.618 5.618 6 C 0.543 3.457 7 O -0.572 6.572 8 C 0.086 3.914 9 H 0.104 0.896 10 N -0.829 5.829 11 C -0.118 4.118 12 C 0.033 3.967 13 C -0.545 4.545 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.957 3.043 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.097 3.903 22 C -0.051 4.051 23 H 0.083 0.917 24 C -0.069 4.069 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.354 0.646 39 H 0.344 0.656 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.264 0.736 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 24.102 0.508 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 C -0.190 4.190 4 C -0.012 4.012 5 N -0.351 5.351 6 C 0.333 3.667 7 O -0.451 6.451 8 C -0.029 4.029 9 H 0.121 0.879 10 N -0.361 5.361 11 C -0.158 4.158 12 C -0.004 4.004 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.025 4.025 22 C -0.070 4.070 23 H 0.101 0.899 24 C -0.069 4.069 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.073 0.927 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.141 0.859 48 H 0.152 0.848 49 H 0.155 0.845 50 H 0.156 0.844 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.362 24.443 -0.412 24.832 hybrid contribution -0.876 -1.780 1.178 2.307 sum -5.238 22.663 0.766 23.273 Atomic orbital electron populations 1.21855 0.92766 1.01637 1.03004 1.21400 0.96610 0.95985 0.91786 1.22022 1.01310 0.93074 1.02570 1.22340 0.95685 0.86445 0.96691 1.48709 1.53689 1.14427 1.18284 1.20405 0.79598 0.81805 0.84938 1.90616 1.53407 1.80353 1.20764 1.21337 0.97123 0.92574 0.91886 0.87855 1.58755 1.25183 1.24411 1.27728 1.22121 0.98122 0.98306 0.97241 1.18934 0.94489 0.93047 0.93901 1.21544 0.95340 1.20363 1.21068 0.92835 1.25829 0.96291 0.97851 0.99043 1.70048 1.12803 1.33241 1.40423 0.85629 0.78738 0.78479 0.79000 1.19644 1.20707 1.19228 1.22930 0.97672 1.00092 0.81789 1.21275 0.96805 0.95491 0.93412 0.89908 1.19445 0.95523 0.97296 0.94663 1.21191 1.00166 0.99266 0.93870 1.21365 0.97328 0.96622 0.99141 1.21433 0.94964 1.00037 0.98413 1.21392 1.00367 0.98629 0.93875 1.21251 0.96101 0.96722 0.99642 0.91277 0.91202 0.93659 0.91676 0.91589 0.91624 0.90521 0.91772 0.83108 0.84268 0.91954 0.93792 0.97901 0.98042 0.92694 0.88625 0.90325 0.85894 0.84802 0.84502 0.84375 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.23 71.98 0.59 -1.63 16 2 C -0.06 -1.00 0.90 -51.29 -0.05 -1.05 16 3 C -0.13 -1.84 6.85 71.98 0.49 -1.35 16 4 C 0.11 2.52 6.29 86.53 0.54 3.07 16 5 N -0.62 -17.18 3.29 -809.40 -2.66 -19.84 16 6 C 0.54 19.14 7.14 87.65 0.63 19.77 16 7 O -0.57 -23.70 16.59 -3.03 -0.05 -23.75 16 8 C 0.09 3.07 2.44 44.17 0.11 3.18 16 9 H 0.10 3.50 7.56 -2.39 -0.02 3.48 16 10 N -0.83 -29.93 8.94 -171.80 -1.54 -31.47 16 11 C -0.12 -4.78 4.62 30.60 0.14 -4.64 16 12 C 0.03 1.66 4.74 29.85 0.14 1.80 16 13 C -0.55 -30.10 9.11 25.60 0.23 -29.87 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.48 5.46 84.66 0.46 0.94 16 16 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 17 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 C 0.10 2.26 5.98 86.73 0.52 2.78 16 22 C -0.05 -1.01 2.79 -10.33 -0.03 -1.04 16 23 H 0.08 1.86 7.77 -2.38 -0.02 1.84 16 24 C -0.07 -1.26 3.68 -19.87 -0.07 -1.33 16 25 C -0.13 -2.30 9.69 22.27 0.22 -2.08 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 27 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 28 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 29 C -0.12 -1.95 6.81 22.27 0.15 -1.80 16 30 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.86 6.26 -2.39 -0.01 0.85 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.94 6.65 -2.38 -0.02 0.93 16 36 H 0.08 1.59 7.68 -2.39 -0.02 1.57 16 37 H 0.06 1.64 7.59 -2.39 -0.02 1.62 16 38 H 0.35 12.76 7.55 -89.69 -0.68 12.09 16 39 H 0.34 12.63 8.58 -89.69 -0.77 11.86 16 40 H 0.06 2.43 6.99 -2.39 -0.02 2.41 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.00 0.14 6.87 -2.39 -0.02 0.13 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.10 1.86 5.94 -2.38 -0.01 1.85 16 46 H 0.08 2.10 6.02 -2.39 -0.01 2.08 16 47 H 0.12 2.08 8.05 -2.91 -0.02 2.06 16 48 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 51 H 0.13 1.87 5.29 -2.91 -0.02 1.86 16 Total: -1.00 -66.95 395.68 2.30 -64.65 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.51 Total: 37.40 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.75 Total: -18.39 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.91 Total: -105.33 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.95 2.30 -64.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424173059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -66.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds