Wall clock time and date at job start Tue Mar 31 2020 16:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.91420 * 2 1 4 4 C 1.55282 * 110.95550 * 236.01572 * 2 1 3 5 5 C 1.54322 * 103.00430 * 277.33118 * 4 2 1 6 6 H 1.09002 * 109.88140 * 97.30457 * 5 4 2 7 7 C 1.50699 * 109.88307 * 218.47191 * 5 4 2 8 8 C 1.38237 * 120.00301 * 78.98841 * 7 5 4 9 9 C 1.38233 * 120.00217 * 179.78685 * 8 7 5 10 10 C 1.38237 * 120.00028 * 0.46631 * 9 8 7 11 11 C 1.38240 * 119.99751 * 359.76530 * 10 9 8 12 12 C 1.38238 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.47023 * 107.27149 * 337.88615 * 5 4 2 14 14 C 1.34782 * 125.64580 * 178.91578 * 13 5 4 15 15 O 1.21591 * 119.99946 * 0.02562 * 14 13 5 16 16 N 1.34775 * 119.99854 * 180.02562 * 14 13 5 17 17 C 1.46505 * 120.00174 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47335 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47520 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47475 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00015 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00269 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47350 * 60.00223 * 24 22 20 26 26 H 1.48502 * 109.47227 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47291 * 300.00041 * 24 22 20 28 28 C 1.47419 * 108.70585 * 358.94325 * 13 5 4 29 29 H 1.09001 * 109.47236 * 297.54378 * 1 2 3 30 30 H 1.08992 * 109.47505 * 57.54720 * 1 2 3 31 31 H 1.09005 * 109.46858 * 177.54899 * 1 2 3 32 32 H 1.08997 * 109.47221 * 182.45038 * 3 2 1 33 33 H 1.09002 * 109.47720 * 302.45547 * 3 2 1 34 34 H 1.09003 * 109.46880 * 62.45222 * 3 2 1 35 35 H 1.09006 * 110.61769 * 158.98198 * 4 2 1 36 36 H 1.08997 * 110.91483 * 35.81879 * 4 2 1 37 37 H 1.08000 * 119.99422 * 359.97438 * 8 7 5 38 38 H 1.07999 * 120.00423 * 180.25098 * 9 8 7 39 39 H 1.07995 * 120.00195 * 179.78452 * 10 9 8 40 40 H 1.07999 * 119.99977 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.99955 * 179.97438 * 12 11 10 42 42 H 0.97003 * 120.00086 * 0.02562 * 16 14 13 43 43 H 1.08998 * 109.47023 * 300.00486 * 17 16 14 44 44 H 1.09000 * 109.46848 * 60.00264 * 17 16 14 45 45 H 1.09010 * 109.47241 * 300.00441 * 18 17 16 46 46 H 1.09007 * 109.47133 * 59.99723 * 18 17 16 47 47 H 1.09007 * 109.46518 * 300.00084 * 19 18 17 48 48 H 1.09000 * 109.46996 * 59.99661 * 19 18 17 49 49 H 0.96993 * 120.00431 * 179.97438 * 23 22 20 50 50 H 1.09002 * 110.36926 * 142.96521 * 28 13 5 51 51 H 1.08995 * 110.36556 * 265.17805 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8106 -1.2024 5 6 2.0304 -2.2668 -0.6946 6 1 1.1243 -2.7520 -1.0577 7 6 3.2451 -3.0215 -1.1698 8 6 4.4554 -2.8623 -0.5211 9 6 5.5686 -3.5579 -0.9543 10 6 5.4739 -4.4055 -2.0422 11 6 4.2647 -4.5612 -2.6939 12 6 3.1504 -3.8688 -2.2580 13 7 2.0162 -2.2165 0.7747 14 6 1.9504 -3.2827 1.5965 15 8 1.8967 -4.4054 1.1327 16 7 1.9440 -3.1044 2.9324 17 6 1.8730 -4.2634 3.8258 18 6 1.8801 -3.7876 5.2799 19 6 1.8066 -4.9980 6.2129 20 6 1.8142 -4.5294 7.6452 21 1 1.8659 -3.4739 7.8677 22 6 1.7542 -5.4482 8.6714 23 7 1.6908 -6.7336 8.4004 24 14 1.7630 -4.8673 10.4468 25 1 0.5915 -3.9862 10.6852 26 1 1.6917 -6.0421 11.3524 27 1 3.0132 -4.1118 10.7143 28 6 2.0853 -0.8067 1.2002 29 1 -0.3634 0.4752 0.9112 30 1 -0.3634 0.5514 -0.8671 31 1 -0.3633 -1.0268 -0.0440 32 1 3.1649 1.4021 -0.0439 33 1 1.6907 1.9655 -0.8671 34 1 1.7619 1.9382 0.9112 35 1 3.1120 -0.5171 -1.4218 36 1 1.4535 -0.6846 -2.0816 37 1 4.5304 -2.1966 0.3260 38 1 6.5132 -3.4366 -0.4450 39 1 6.3444 -4.9464 -2.3828 40 1 4.1907 -5.2230 -3.5441 41 1 2.2059 -3.9900 -2.7674 42 1 1.9864 -2.2087 3.3024 43 1 0.9551 -4.8176 3.6297 44 1 2.7325 -4.9103 3.6506 45 1 2.7978 -3.2331 5.4763 46 1 1.0203 -3.1408 5.4548 47 1 0.8890 -5.5528 6.0166 48 1 2.6666 -5.6444 6.0379 49 1 1.6489 -7.3800 9.1224 50 1 1.4673 -0.6463 2.0836 51 1 3.1176 -0.5220 1.4035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425444683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:51 Heat of formation + Delta-G solvation = -21.893445 kcal Electronic energy + Delta-G solvation = -28461.443867 eV Core-core repulsion = 24745.755819 eV Total energy + Delta-G solvation = -3715.688048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91874 -38.93320 -38.19691 -35.34846 -33.88456 -33.35410 -32.18144 -30.96475 -30.73987 -28.79965 -27.68387 -26.83774 -26.28619 -23.87580 -22.92931 -22.56793 -21.25387 -20.58839 -19.54571 -19.42100 -17.88663 -17.05801 -16.42226 -16.18103 -15.60042 -15.23883 -14.84868 -14.75730 -14.55218 -14.44109 -14.34403 -13.98243 -13.74193 -13.49134 -13.43215 -13.18552 -12.78277 -12.61340 -12.45337 -12.27255 -12.20447 -11.87757 -11.77001 -11.67568 -11.51010 -11.22859 -11.06532 -10.95854 -10.87513 -10.83479 -10.68196 -10.60499 -9.98819 -9.83293 -9.42033 -9.12045 -8.94699 -8.91928 -8.75233 -8.41201 -8.35369 -6.00074 -4.03284 1.28946 1.38091 2.68693 3.32715 3.37475 3.39312 3.41154 3.71883 3.98884 4.13797 4.33981 4.41592 4.46001 4.63957 4.81466 4.87727 4.94909 4.98255 5.03619 5.13329 5.20407 5.28691 5.33822 5.35448 5.41931 5.47632 5.52339 5.55008 5.60040 5.69920 5.74556 5.75167 5.84040 5.84826 5.92407 5.97074 6.02410 6.17860 6.21998 6.40837 6.46411 6.53955 6.60124 6.65278 6.88357 6.95761 7.05429 7.17659 7.65519 7.78941 7.98856 8.15707 8.39792 8.82377 9.03238 9.60648 11.11228 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002597 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.578799 B =10780.775046 C =12212.240419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.113 4.113 5 C 0.199 3.801 6 H 0.080 0.920 7 C -0.080 4.080 8 C -0.098 4.098 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.106 4.106 13 N -0.633 5.633 14 C 0.719 3.281 15 O -0.581 6.581 16 N -0.740 5.740 17 C 0.136 3.864 18 C -0.119 4.119 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.107 3.893 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.392 0.608 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.262 0.738 50 H 0.075 0.925 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 16.305 -24.456 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.193 4.193 4 C -0.151 4.151 5 C 0.094 3.906 6 H 0.098 0.902 7 C -0.081 4.081 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.125 4.125 13 N -0.372 5.372 14 C 0.420 3.580 15 O -0.457 6.457 16 N -0.395 5.395 17 C 0.013 3.987 18 C -0.157 4.157 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.017 4.017 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.762 15.170 -24.613 29.044 hybrid contribution 0.080 0.533 1.342 1.446 sum 2.843 15.702 -23.271 28.217 Atomic orbital electron populations 1.21767 0.93181 1.02407 1.02085 1.21753 0.96295 0.95118 0.94499 1.21726 1.00975 0.94243 1.02365 1.22868 1.02382 0.92120 0.97769 1.20204 0.95565 0.95303 0.79507 0.90178 1.20028 0.94767 0.97594 0.95755 1.20853 0.92276 0.99543 0.99004 1.21109 0.98530 0.97226 0.97003 1.21109 0.97749 0.98887 0.96387 1.21070 0.93005 0.99603 1.00173 1.20920 0.98490 0.96303 0.96760 1.47595 1.79109 1.04986 1.05465 1.15504 0.78022 0.83277 0.81149 1.90940 1.57632 1.21704 1.75461 1.45408 1.79256 1.10875 1.03961 1.21496 1.01760 0.86480 0.88968 1.21882 1.00732 1.01407 0.91714 1.19016 0.97645 0.91794 0.92826 1.21166 1.50868 0.92924 0.91143 0.92727 1.25027 0.95297 0.94904 0.99213 1.69954 1.50328 1.00588 1.32403 0.86648 0.78562 0.78095 0.84609 1.20254 1.21268 1.20258 1.22386 1.00717 0.81089 0.97495 0.92177 0.92229 0.92186 0.92213 0.92032 0.92053 0.90116 0.89721 0.86713 0.86344 0.86374 0.86256 0.86313 0.77457 0.92032 0.92032 0.92847 0.92840 0.96268 0.96269 0.92868 0.90693 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.61 37.16 0.32 -0.61 16 2 C -0.08 -0.51 0.96 -152.29 -0.15 -0.65 16 3 C -0.14 -0.70 8.67 37.16 0.32 -0.37 16 4 C -0.11 -0.82 5.43 -24.83 -0.13 -0.96 16 5 C 0.20 2.12 2.67 -68.11 -0.18 1.94 16 6 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 7 C -0.08 -0.96 4.09 -104.62 -0.43 -1.39 16 8 C -0.10 -1.20 9.14 -39.58 -0.36 -1.57 16 9 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 10 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 12 C -0.11 -1.21 9.68 -39.58 -0.38 -1.59 16 13 N -0.63 -7.60 2.32 -170.01 -0.39 -7.99 16 14 C 0.72 11.74 8.13 -86.91 -0.71 11.03 16 15 O -0.58 -11.99 16.18 5.29 0.09 -11.90 16 16 N -0.74 -11.50 5.52 -65.22 -0.36 -11.86 16 17 C 0.14 2.53 5.67 -4.04 -0.02 2.51 16 18 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 19 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 20 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 24 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 C 0.11 0.92 5.50 -2.53 -0.01 0.90 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 32 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 36 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 37 H 0.11 1.36 7.70 -52.49 -0.40 0.96 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.15 8.05 -52.49 -0.42 0.72 16 42 H 0.39 5.02 6.95 -40.82 -0.28 4.74 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.07 0.62 7.21 -51.93 -0.37 0.24 16 51 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 410.93 15.07 6.19 6.19 Total: -1.00 -33.97 410.93 -11.38 -45.35 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.00 Total: 1.47 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.62 Total: -11.51 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.02 Total: -46.20 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.97 -11.38 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425444683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.458 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds