Wall clock time and date at job start Tue Mar 31 2020 16:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 110.91420 * 2 1 4 4 C 1.55282 * 110.95550 * 236.01572 * 2 1 3 5 5 C 1.54322 * 103.00430 * 277.33118 * 4 2 1 6 6 H 1.09002 * 109.88140 * 97.30457 * 5 4 2 7 7 C 1.50699 * 109.88307 * 218.47191 * 5 4 2 8 8 C 1.38237 * 120.00301 * 78.98841 * 7 5 4 9 9 C 1.38233 * 120.00217 * 179.78685 * 8 7 5 10 10 C 1.38237 * 120.00028 * 0.46631 * 9 8 7 11 11 C 1.38240 * 119.99751 * 359.76530 * 10 9 8 12 12 C 1.38238 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.47023 * 107.27149 * 337.88615 * 5 4 2 14 14 C 1.34782 * 125.64580 * 178.91578 * 13 5 4 15 15 O 1.21591 * 119.99946 * 0.02562 * 14 13 5 16 16 N 1.34775 * 119.99854 * 180.02562 * 14 13 5 17 17 C 1.46505 * 120.00174 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47335 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.47520 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47475 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00015 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00269 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47350 * 60.00223 * 24 22 20 26 26 H 1.48502 * 109.47227 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47291 * 300.00041 * 24 22 20 28 28 C 1.47419 * 108.70585 * 358.94325 * 13 5 4 29 29 H 1.09001 * 109.47236 * 297.54378 * 1 2 3 30 30 H 1.08992 * 109.47505 * 57.54720 * 1 2 3 31 31 H 1.09005 * 109.46858 * 177.54899 * 1 2 3 32 32 H 1.08997 * 109.47221 * 182.45038 * 3 2 1 33 33 H 1.09002 * 109.47720 * 302.45547 * 3 2 1 34 34 H 1.09003 * 109.46880 * 62.45222 * 3 2 1 35 35 H 1.09006 * 110.61769 * 158.98198 * 4 2 1 36 36 H 1.08997 * 110.91483 * 35.81879 * 4 2 1 37 37 H 1.08000 * 119.99422 * 359.97438 * 8 7 5 38 38 H 1.07999 * 120.00423 * 180.25098 * 9 8 7 39 39 H 1.07995 * 120.00195 * 179.78452 * 10 9 8 40 40 H 1.07999 * 119.99977 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.99955 * 179.97438 * 12 11 10 42 42 H 0.97003 * 120.00086 * 0.02562 * 16 14 13 43 43 H 1.08998 * 109.47023 * 300.00486 * 17 16 14 44 44 H 1.09000 * 109.46848 * 60.00264 * 17 16 14 45 45 H 1.09010 * 109.47241 * 300.00441 * 18 17 16 46 46 H 1.09007 * 109.47133 * 59.99723 * 18 17 16 47 47 H 1.09007 * 109.46518 * 300.00084 * 19 18 17 48 48 H 1.09000 * 109.46996 * 59.99661 * 19 18 17 49 49 H 0.96993 * 120.00431 * 179.97438 * 23 22 20 50 50 H 1.09002 * 110.36926 * 142.96521 * 28 13 5 51 51 H 1.08995 * 110.36556 * 265.17805 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8106 -1.2024 5 6 2.0304 -2.2668 -0.6946 6 1 1.1243 -2.7520 -1.0577 7 6 3.2451 -3.0215 -1.1698 8 6 4.4554 -2.8623 -0.5211 9 6 5.5686 -3.5579 -0.9543 10 6 5.4739 -4.4055 -2.0422 11 6 4.2647 -4.5612 -2.6939 12 6 3.1504 -3.8688 -2.2580 13 7 2.0162 -2.2165 0.7747 14 6 1.9504 -3.2827 1.5965 15 8 1.8967 -4.4054 1.1327 16 7 1.9440 -3.1044 2.9324 17 6 1.8730 -4.2634 3.8258 18 6 1.8801 -3.7876 5.2799 19 6 1.8066 -4.9980 6.2129 20 6 1.8142 -4.5294 7.6452 21 1 1.8659 -3.4739 7.8677 22 6 1.7542 -5.4482 8.6714 23 7 1.6908 -6.7336 8.4004 24 14 1.7630 -4.8673 10.4468 25 1 0.5915 -3.9862 10.6852 26 1 1.6917 -6.0421 11.3524 27 1 3.0132 -4.1118 10.7143 28 6 2.0853 -0.8067 1.2002 29 1 -0.3634 0.4752 0.9112 30 1 -0.3634 0.5514 -0.8671 31 1 -0.3633 -1.0268 -0.0440 32 1 3.1649 1.4021 -0.0439 33 1 1.6907 1.9655 -0.8671 34 1 1.7619 1.9382 0.9112 35 1 3.1120 -0.5171 -1.4218 36 1 1.4535 -0.6846 -2.0816 37 1 4.5304 -2.1966 0.3260 38 1 6.5132 -3.4366 -0.4450 39 1 6.3444 -4.9464 -2.3828 40 1 4.1907 -5.2230 -3.5441 41 1 2.2059 -3.9900 -2.7674 42 1 1.9864 -2.2087 3.3024 43 1 0.9551 -4.8176 3.6297 44 1 2.7325 -4.9103 3.6506 45 1 2.7978 -3.2331 5.4763 46 1 1.0203 -3.1408 5.4548 47 1 0.8890 -5.5528 6.0166 48 1 2.6666 -5.6444 6.0379 49 1 1.6489 -7.3800 9.1224 50 1 1.4673 -0.6463 2.0836 51 1 3.1176 -0.5220 1.4035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425444683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:50 Heat of formation + Delta-G solvation = -40.008455 kcal Electronic energy + Delta-G solvation = -28462.229393 eV Core-core repulsion = 24745.755819 eV Total energy + Delta-G solvation = -3716.473574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86509 -39.99925 -39.08087 -36.95399 -35.21888 -34.72475 -33.48709 -32.33556 -31.73987 -29.61283 -28.45118 -28.17010 -27.23379 -25.21962 -24.23241 -23.46704 -22.33404 -22.28054 -20.60148 -20.15715 -19.03777 -18.47340 -17.91333 -17.27638 -16.79863 -16.50670 -16.37923 -15.85362 -15.71324 -15.36755 -15.26269 -15.05530 -14.77122 -14.42261 -14.27033 -14.25035 -13.85852 -13.76369 -13.67541 -13.40157 -13.32568 -13.12560 -12.76591 -12.71185 -12.56261 -12.42416 -12.39691 -12.27458 -11.95278 -11.81650 -11.68675 -11.59120 -11.56104 -11.45649 -11.28162 -11.12115 -10.55184 -10.23925 -9.81325 -9.71700 -9.42604 -8.19435 -6.31411 0.42733 0.50861 1.41253 1.44732 1.52353 1.57539 2.13243 2.41781 2.84215 3.05766 3.14098 3.38876 3.62358 3.73902 3.93827 3.99502 4.12885 4.14832 4.20056 4.23954 4.26262 4.37263 4.42418 4.53287 4.55207 4.62528 4.70851 4.75572 4.85875 4.89517 4.93284 4.94297 5.00577 5.07137 5.08979 5.13629 5.14276 5.17202 5.23693 5.30381 5.40349 5.45513 5.51655 5.53168 5.56060 5.61102 5.67037 5.69400 5.83252 6.06232 6.12214 6.21826 6.85383 6.98439 7.38167 7.56265 8.92676 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.002597 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.578799 B =10780.775046 C =12212.240419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.131 4.131 4 C -0.102 4.102 5 C 0.194 3.806 6 H 0.067 0.933 7 C -0.093 4.093 8 C -0.116 4.116 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.127 4.127 12 C -0.123 4.123 13 N -0.625 5.625 14 C 0.715 3.285 15 O -0.630 6.630 16 N -0.730 5.730 17 C 0.153 3.847 18 C -0.098 4.098 19 C 0.025 3.975 20 C -0.542 4.542 21 H 0.067 0.933 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.265 1.265 28 C 0.097 3.903 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.408 0.592 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.068 0.932 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 19.272 -24.666 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.188 4.188 4 C -0.140 4.140 5 C 0.090 3.910 6 H 0.085 0.915 7 C -0.094 4.094 8 C -0.134 4.134 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.145 4.145 12 C -0.142 4.142 13 N -0.361 5.361 14 C 0.417 3.583 15 O -0.511 6.511 16 N -0.386 5.386 17 C 0.028 3.972 18 C -0.136 4.136 19 C -0.012 4.012 20 C -0.580 4.580 21 H 0.086 0.914 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.792 3.208 25 H -0.189 1.189 26 H -0.212 1.212 27 H -0.190 1.190 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.244 0.756 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.010 0.990 48 H 0.009 0.991 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.055 18.225 -24.844 30.963 hybrid contribution -0.009 -0.419 1.328 1.392 sum 3.046 17.806 -23.516 29.654 Atomic orbital electron populations 1.21763 0.93165 1.01332 1.03043 1.21727 0.96176 0.95804 0.92955 1.21702 1.01153 0.92771 1.03224 1.22853 1.03192 0.89515 0.98459 1.20391 0.94589 0.97472 0.78567 0.91466 1.20227 0.95094 0.98007 0.96081 1.20962 0.92815 1.00274 0.99354 1.21390 0.98992 0.97347 0.97478 1.21434 0.98656 0.98780 0.96132 1.21412 0.92786 0.99531 1.00722 1.21206 0.99415 0.96481 0.97063 1.47548 1.77334 1.05446 1.05813 1.15642 0.77792 0.83558 0.81350 1.90900 1.59829 1.24090 1.76298 1.45059 1.79259 1.10678 1.03625 1.21045 1.00142 0.87162 0.88864 1.21575 1.02033 0.99013 0.90997 1.18921 0.94984 0.93419 0.93910 1.21643 1.50471 0.93661 0.92194 0.91441 1.26042 0.94724 0.94911 1.04446 1.70110 1.51444 1.02056 1.33994 0.85456 0.79311 0.77720 0.78283 1.18930 1.21171 1.18961 1.22709 1.01845 0.79132 0.98779 0.91818 0.90678 0.94292 0.91885 0.90896 0.91485 0.89594 0.88008 0.86848 0.85058 0.84243 0.84086 0.85200 0.75581 0.93704 0.93889 0.91434 0.91342 0.99028 0.99092 0.92793 0.90025 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.61 71.98 0.62 -0.95 16 2 C -0.07 -0.73 0.96 -50.75 -0.05 -0.78 16 3 C -0.13 -0.93 8.67 71.98 0.62 -0.31 16 4 C -0.10 -1.30 5.43 31.83 0.17 -1.12 16 5 C 0.19 4.08 2.67 44.59 0.12 4.20 16 6 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16 7 C -0.09 -2.23 4.09 -19.86 -0.08 -2.31 16 8 C -0.12 -2.83 9.14 22.27 0.20 -2.63 16 9 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 10 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 11 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 12 C -0.12 -2.80 9.68 22.27 0.22 -2.59 16 13 N -0.62 -14.77 2.32 -810.05 -1.88 -16.65 16 14 C 0.71 23.69 8.13 179.05 1.46 25.14 16 15 O -0.63 -27.05 16.18 -4.00 -0.06 -27.11 16 16 N -0.73 -22.57 5.52 -478.53 -2.64 -25.21 16 17 C 0.15 5.82 5.67 86.38 0.49 6.31 16 18 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 19 C 0.03 1.35 4.97 29.85 0.15 1.50 16 20 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 23 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 24 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 25 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 28 C 0.10 1.50 5.50 86.85 0.48 1.98 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.62 7.82 -2.38 -0.02 0.60 16 32 H 0.06 0.44 8.11 -2.39 -0.02 0.42 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 35 H 0.09 1.04 7.67 -2.38 -0.02 1.03 16 36 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 37 H 0.11 2.67 7.70 -2.91 -0.02 2.65 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.13 2.51 8.05 -2.91 -0.02 2.49 16 42 H 0.41 9.89 6.95 -92.71 -0.64 9.25 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 47 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 48 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 50 H 0.08 1.17 7.21 -2.39 -0.02 1.15 16 51 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 Total: -1.00 -75.56 410.93 3.90 -71.67 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.24 Total: 22.06 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.92 Total: -13.19 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.23 Total: -99.50 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.56 3.90 -71.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425444683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.658 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds