Wall clock time and date at job start Tue Mar 31 2020 16:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.91774 * 2 1 4 4 C 1.55154 * 111.00453 * 236.10021 * 2 1 3 5 5 C 1.54327 * 102.94389 * 206.42300 * 4 2 1 6 6 H 1.09002 * 109.88367 * 262.77632 * 5 4 2 7 7 C 1.50701 * 110.01207 * 141.68012 * 5 4 2 8 8 C 1.38238 * 120.00261 * 280.12935 * 7 5 4 9 9 C 1.38228 * 120.00092 * 179.78669 * 8 7 5 10 10 C 1.38234 * 120.00078 * 0.46384 * 9 8 7 11 11 C 1.38241 * 120.00083 * 359.76389 * 10 9 8 12 12 C 1.38237 * 119.99731 * 100.39927 * 7 5 4 13 13 N 1.47022 * 107.27108 * 22.19434 * 5 4 2 14 14 C 1.34775 * 125.64810 * 181.09503 * 13 5 4 15 15 O 1.21579 * 120.00336 * 359.97438 * 14 13 5 16 16 N 1.34781 * 119.99706 * 179.97438 * 14 13 5 17 17 C 1.46502 * 119.99715 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.46885 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47032 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99903 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99963 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47134 * 60.00583 * 24 22 20 26 26 H 1.48502 * 109.46611 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47286 * 300.00107 * 24 22 20 28 28 C 1.47425 * 108.70278 * 1.05539 * 13 5 4 29 29 H 1.08998 * 109.46986 * 297.55137 * 1 2 3 30 30 H 1.09005 * 109.47237 * 57.54907 * 1 2 3 31 31 H 1.09004 * 109.47426 * 177.55075 * 1 2 3 32 32 H 1.08996 * 109.47431 * 182.44703 * 3 2 1 33 33 H 1.08997 * 109.47585 * 302.45273 * 3 2 1 34 34 H 1.09008 * 109.47119 * 62.45032 * 3 2 1 35 35 H 1.08997 * 110.72391 * 88.05983 * 4 2 1 36 36 H 1.09000 * 110.72506 * 324.78667 * 4 2 1 37 37 H 1.08007 * 119.99586 * 359.97438 * 8 7 5 38 38 H 1.07996 * 120.00162 * 180.24454 * 9 8 7 39 39 H 1.08003 * 120.00267 * 179.78942 * 10 9 8 40 40 H 1.07993 * 120.00136 * 180.02562 * 11 10 9 41 41 H 1.07993 * 120.00414 * 359.97438 * 12 7 5 42 42 H 0.96997 * 120.00377 * 0.02562 * 16 14 13 43 43 H 1.08998 * 109.47210 * 299.99996 * 17 16 14 44 44 H 1.08994 * 109.47134 * 60.00627 * 17 16 14 45 45 H 1.08998 * 109.47145 * 299.99912 * 18 17 16 46 46 H 1.09003 * 109.46958 * 60.00394 * 18 17 16 47 47 H 1.09002 * 109.46554 * 300.00041 * 19 18 17 48 48 H 1.08992 * 109.47255 * 59.99590 * 19 18 17 49 49 H 0.96995 * 120.00005 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.36364 * 94.70996 * 28 13 5 51 51 H 1.08996 * 110.37195 * 216.92593 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0861 -0.8079 -1.2022 5 6 3.4674 -1.2741 -0.6961 6 1 4.2426 -0.5997 -1.0600 7 6 3.7443 -2.6770 -1.1716 8 6 3.1823 -3.7541 -0.5120 9 6 3.4328 -5.0407 -0.9509 10 6 4.2530 -5.2508 -2.0437 11 6 4.8188 -4.1740 -2.7005 12 6 4.5648 -2.8871 -2.2641 13 7 3.4271 -1.2431 0.7733 14 6 4.4481 -1.5604 1.5939 15 8 5.5160 -1.9090 1.1290 16 7 4.2851 -1.4912 2.9300 17 6 5.3951 -1.8355 3.8221 18 6 4.9490 -1.6747 5.2767 19 6 6.1084 -2.0337 6.2084 20 6 5.6688 -1.8760 7.6412 21 1 4.6629 -1.5524 7.8649 22 6 6.5504 -2.1456 8.6664 23 7 7.7751 -2.5401 8.3939 24 14 6.0057 -1.9494 10.4424 25 1 4.8571 -2.8516 10.7105 26 1 7.1310 -2.2980 11.3466 27 1 5.5964 -0.5422 10.6821 28 6 2.0853 -0.8066 1.2003 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3634 -1.0267 -0.0439 32 1 3.1649 1.4020 -0.0439 33 1 1.6908 1.9655 -0.8671 34 1 1.7619 1.9383 0.9112 35 1 2.1921 -0.1699 -2.0796 36 1 1.4468 -1.6631 -1.4211 37 1 2.5451 -3.5901 0.3445 38 1 2.9906 -5.8819 -0.4380 39 1 4.4514 -6.2563 -2.3845 40 1 5.4592 -4.3382 -3.5544 41 1 5.0071 -2.0460 -2.7771 42 1 3.4331 -1.2134 3.3010 43 1 5.6953 -2.8685 3.6465 44 1 6.2383 -1.1736 3.6250 45 1 4.6485 -0.6418 5.4526 46 1 4.1058 -2.3370 5.4735 47 1 6.4092 -3.0665 6.0326 48 1 6.9512 -1.3713 6.0114 49 1 8.3953 -2.7294 9.1152 50 1 1.4519 -1.6704 1.4024 51 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425444684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:53 Heat of formation + Delta-G solvation = -21.743231 kcal Electronic energy + Delta-G solvation = -28464.265066 eV Core-core repulsion = 24748.583532 eV Total energy + Delta-G solvation = -3715.681534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92400 -38.93100 -38.20440 -35.34944 -33.88559 -33.35398 -32.17948 -30.96474 -30.73723 -28.80279 -27.68517 -26.83777 -26.28503 -23.87724 -22.92987 -22.56623 -21.25215 -20.58918 -19.54422 -19.42110 -17.88757 -17.05710 -16.42259 -16.18173 -15.59856 -15.24161 -14.84659 -14.75613 -14.55751 -14.44110 -14.34478 -13.98552 -13.74227 -13.48808 -13.43010 -13.18473 -12.77876 -12.61601 -12.45338 -12.27258 -12.20471 -11.87769 -11.76939 -11.67647 -11.51100 -11.22589 -11.06582 -10.95929 -10.87541 -10.83402 -10.68209 -10.60512 -9.98846 -9.83372 -9.42018 -9.12055 -8.94566 -8.92119 -8.75226 -8.41066 -8.35384 -6.00097 -4.03293 1.29054 1.38264 2.68610 3.32727 3.37459 3.39317 3.41131 3.71947 3.99162 4.13691 4.33970 4.41606 4.45983 4.64031 4.81543 4.87804 4.95020 4.98412 5.03888 5.13511 5.20407 5.28682 5.33761 5.35435 5.42012 5.47653 5.52465 5.55004 5.60071 5.69861 5.74694 5.75149 5.84093 5.84856 5.92512 5.97101 6.02508 6.17764 6.21973 6.40944 6.46527 6.54073 6.60174 6.65291 6.88369 6.95881 7.05383 7.17651 7.65513 7.78945 7.98848 8.15670 8.39765 8.82355 9.03212 9.60635 11.11201 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002598 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.548411 B =10775.820737 C =12210.183048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.113 4.113 5 C 0.199 3.801 6 H 0.080 0.920 7 C -0.081 4.081 8 C -0.098 4.098 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.106 4.106 13 N -0.633 5.633 14 C 0.719 3.281 15 O -0.580 6.580 16 N -0.740 5.740 17 C 0.136 3.864 18 C -0.119 4.119 19 C 0.025 3.975 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.107 3.893 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.392 0.608 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.262 0.738 50 H 0.067 0.933 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 3.138 -24.433 29.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.194 4.194 4 C -0.151 4.151 5 C 0.094 3.906 6 H 0.098 0.902 7 C -0.082 4.082 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.125 4.125 13 N -0.372 5.372 14 C 0.420 3.580 15 O -0.457 6.457 16 N -0.395 5.395 17 C 0.013 3.987 18 C -0.157 4.157 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.178 2.802 -24.590 29.033 hybrid contribution -0.524 0.113 1.343 1.446 sum -15.701 2.915 -23.247 28.204 Atomic orbital electron populations 1.21728 0.92980 1.02249 1.02362 1.21733 0.95900 0.95536 0.94511 1.21766 1.01447 0.94134 1.02086 1.22844 0.94459 1.00018 0.97786 1.20205 0.97893 0.92990 0.79500 0.90202 1.20030 0.97335 0.95102 0.95715 1.20853 0.99657 0.92189 0.98917 1.21107 0.98951 0.96856 0.96980 1.21109 0.97867 0.98775 0.96362 1.21068 0.99977 0.92674 1.00155 1.20916 0.97664 0.97108 0.96772 1.47599 1.11750 1.72347 1.05475 1.15501 0.82791 0.78508 0.81156 1.90937 1.25315 1.54066 1.75404 1.45409 1.17130 1.73007 1.03963 1.21497 0.87745 1.00468 0.88995 1.21883 1.01377 1.00768 0.91707 1.19016 0.92271 0.97157 0.92838 1.21168 0.98153 1.45636 0.91143 0.92728 1.25028 0.94949 0.95254 0.99212 1.69957 1.04979 1.45914 1.32422 0.86645 0.78108 0.78542 0.84615 1.20254 1.21267 1.20259 1.22393 0.83895 0.97911 0.97483 0.92063 0.92035 0.92212 0.92184 0.92231 0.92174 0.89722 0.90083 0.86711 0.86347 0.86377 0.86258 0.86315 0.77459 0.92036 0.92030 0.92843 0.92843 0.96274 0.96263 0.92871 0.91525 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.66 37.15 0.32 -0.38 16 2 C -0.08 -0.51 0.96 -152.36 -0.15 -0.65 16 3 C -0.14 -0.93 8.61 37.16 0.32 -0.61 16 4 C -0.11 -0.82 5.44 -24.90 -0.14 -0.95 16 5 C 0.20 2.12 2.67 -68.10 -0.18 1.94 16 6 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 7 C -0.08 -0.97 4.09 -104.62 -0.43 -1.40 16 8 C -0.10 -1.20 9.14 -39.58 -0.36 -1.56 16 9 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 10 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 12 C -0.11 -1.21 9.68 -39.58 -0.38 -1.59 16 13 N -0.63 -7.60 2.29 -170.00 -0.39 -7.99 16 14 C 0.72 11.73 8.10 -86.92 -0.70 11.02 16 15 O -0.58 -11.98 16.17 5.30 0.09 -11.89 16 16 N -0.74 -11.49 5.52 -65.23 -0.36 -11.85 16 17 C 0.14 2.53 5.67 -4.04 -0.02 2.51 16 18 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 19 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 20 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 21 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 24 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.11 0.92 5.50 -2.53 -0.01 0.90 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 32 H 0.06 0.51 7.81 -51.93 -0.41 0.10 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.08 0.50 8.05 -51.93 -0.42 0.09 16 36 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 37 H 0.11 1.37 7.67 -52.48 -0.40 0.97 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.14 8.05 -52.49 -0.42 0.72 16 42 H 0.39 5.02 6.95 -40.82 -0.28 4.74 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 51 H 0.07 0.62 7.21 -51.93 -0.37 0.24 16 LS Contribution 410.85 15.07 6.19 6.19 Total: -1.00 -33.96 410.85 -11.38 -45.34 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -9.00 Total: 1.48 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.62 Total: -11.53 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.01 Total: -46.19 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.96 -11.38 -45.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425444684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.594 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds