Wall clock time and date at job start Tue Mar 31 2020 16:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 110.91774 * 2 1 4 4 C 1.55154 * 111.00453 * 236.10021 * 2 1 3 5 5 C 1.54327 * 102.94389 * 206.42300 * 4 2 1 6 6 H 1.09002 * 109.88367 * 262.77632 * 5 4 2 7 7 C 1.50701 * 110.01207 * 141.68012 * 5 4 2 8 8 C 1.38238 * 120.00261 * 280.12935 * 7 5 4 9 9 C 1.38228 * 120.00092 * 179.78669 * 8 7 5 10 10 C 1.38234 * 120.00078 * 0.46384 * 9 8 7 11 11 C 1.38241 * 120.00083 * 359.76389 * 10 9 8 12 12 C 1.38237 * 119.99731 * 100.39927 * 7 5 4 13 13 N 1.47022 * 107.27108 * 22.19434 * 5 4 2 14 14 C 1.34775 * 125.64810 * 181.09503 * 13 5 4 15 15 O 1.21579 * 120.00336 * 359.97438 * 14 13 5 16 16 N 1.34781 * 119.99706 * 179.97438 * 14 13 5 17 17 C 1.46502 * 119.99715 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.53006 * 109.46885 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47032 * 180.02562 * 19 18 17 21 21 H 1.08006 * 119.99903 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99963 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47134 * 60.00583 * 24 22 20 26 26 H 1.48502 * 109.46611 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47286 * 300.00107 * 24 22 20 28 28 C 1.47425 * 108.70278 * 1.05539 * 13 5 4 29 29 H 1.08998 * 109.46986 * 297.55137 * 1 2 3 30 30 H 1.09005 * 109.47237 * 57.54907 * 1 2 3 31 31 H 1.09004 * 109.47426 * 177.55075 * 1 2 3 32 32 H 1.08996 * 109.47431 * 182.44703 * 3 2 1 33 33 H 1.08997 * 109.47585 * 302.45273 * 3 2 1 34 34 H 1.09008 * 109.47119 * 62.45032 * 3 2 1 35 35 H 1.08997 * 110.72391 * 88.05983 * 4 2 1 36 36 H 1.09000 * 110.72506 * 324.78667 * 4 2 1 37 37 H 1.08007 * 119.99586 * 359.97438 * 8 7 5 38 38 H 1.07996 * 120.00162 * 180.24454 * 9 8 7 39 39 H 1.08003 * 120.00267 * 179.78942 * 10 9 8 40 40 H 1.07993 * 120.00136 * 180.02562 * 11 10 9 41 41 H 1.07993 * 120.00414 * 359.97438 * 12 7 5 42 42 H 0.96997 * 120.00377 * 0.02562 * 16 14 13 43 43 H 1.08998 * 109.47210 * 299.99996 * 17 16 14 44 44 H 1.08994 * 109.47134 * 60.00627 * 17 16 14 45 45 H 1.08998 * 109.47145 * 299.99912 * 18 17 16 46 46 H 1.09003 * 109.46958 * 60.00394 * 18 17 16 47 47 H 1.09002 * 109.46554 * 300.00041 * 19 18 17 48 48 H 1.08992 * 109.47255 * 59.99590 * 19 18 17 49 49 H 0.96995 * 120.00005 * 179.97438 * 23 22 20 50 50 H 1.09000 * 110.36364 * 94.70996 * 28 13 5 51 51 H 1.08996 * 110.37195 * 216.92593 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0861 -0.8079 -1.2022 5 6 3.4674 -1.2741 -0.6961 6 1 4.2426 -0.5997 -1.0600 7 6 3.7443 -2.6770 -1.1716 8 6 3.1823 -3.7541 -0.5120 9 6 3.4328 -5.0407 -0.9509 10 6 4.2530 -5.2508 -2.0437 11 6 4.8188 -4.1740 -2.7005 12 6 4.5648 -2.8871 -2.2641 13 7 3.4271 -1.2431 0.7733 14 6 4.4481 -1.5604 1.5939 15 8 5.5160 -1.9090 1.1290 16 7 4.2851 -1.4912 2.9300 17 6 5.3951 -1.8355 3.8221 18 6 4.9490 -1.6747 5.2767 19 6 6.1084 -2.0337 6.2084 20 6 5.6688 -1.8760 7.6412 21 1 4.6629 -1.5524 7.8649 22 6 6.5504 -2.1456 8.6664 23 7 7.7751 -2.5401 8.3939 24 14 6.0057 -1.9494 10.4424 25 1 4.8571 -2.8516 10.7105 26 1 7.1310 -2.2980 11.3466 27 1 5.5964 -0.5422 10.6821 28 6 2.0853 -0.8066 1.2003 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3634 -1.0267 -0.0439 32 1 3.1649 1.4020 -0.0439 33 1 1.6908 1.9655 -0.8671 34 1 1.7619 1.9383 0.9112 35 1 2.1921 -0.1699 -2.0796 36 1 1.4468 -1.6631 -1.4211 37 1 2.5451 -3.5901 0.3445 38 1 2.9906 -5.8819 -0.4380 39 1 4.4514 -6.2563 -2.3845 40 1 5.4592 -4.3382 -3.5544 41 1 5.0071 -2.0460 -2.7771 42 1 3.4331 -1.2134 3.3010 43 1 5.6953 -2.8685 3.6465 44 1 6.2383 -1.1736 3.6250 45 1 4.6485 -0.6418 5.4526 46 1 4.1058 -2.3370 5.4735 47 1 6.4092 -3.0665 6.0326 48 1 6.9512 -1.3713 6.0114 49 1 8.3953 -2.7294 9.1152 50 1 1.4519 -1.6704 1.4024 51 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425444684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:52 Heat of formation + Delta-G solvation = -39.844600 kcal Electronic energy + Delta-G solvation = -28465.050001 eV Core-core repulsion = 24748.583532 eV Total energy + Delta-G solvation = -3716.466468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87017 -39.99745 -39.08823 -36.95457 -35.21905 -34.72651 -33.48541 -32.33506 -31.73853 -29.61572 -28.45126 -28.17192 -27.23283 -25.21986 -24.23417 -23.46705 -22.33414 -22.27948 -20.60091 -20.15635 -19.03814 -18.47334 -17.91386 -17.27724 -16.79618 -16.50777 -16.38079 -15.85375 -15.71163 -15.37093 -15.26295 -15.06055 -14.77141 -14.42035 -14.27084 -14.25048 -13.85739 -13.76429 -13.67344 -13.40290 -13.32534 -13.12569 -12.76597 -12.71229 -12.56263 -12.42489 -12.39706 -12.27453 -11.95127 -11.81790 -11.68752 -11.59116 -11.56041 -11.45752 -11.28165 -11.12068 -10.55206 -10.23921 -9.81316 -9.72041 -9.42337 -8.19463 -6.31421 0.42763 0.50907 1.41239 1.44744 1.52354 1.57496 2.13292 2.41776 2.84224 3.05723 3.14084 3.39114 3.62239 3.73881 3.93911 3.99438 4.12917 4.14825 4.20102 4.23952 4.26353 4.37386 4.42597 4.53281 4.55228 4.62546 4.70892 4.75501 4.85788 4.89509 4.93294 4.94307 5.00604 5.07135 5.08961 5.13597 5.14269 5.17231 5.23741 5.30284 5.40364 5.45516 5.51665 5.53165 5.56074 5.61098 5.67114 5.69412 5.83251 6.06268 6.12222 6.21801 6.85360 6.98443 7.38151 7.56303 8.92645 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.002598 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.548411 B =10775.820737 C =12210.183048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.102 4.102 5 C 0.194 3.806 6 H 0.067 0.933 7 C -0.093 4.093 8 C -0.116 4.116 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.127 4.127 12 C -0.123 4.123 13 N -0.625 5.625 14 C 0.715 3.285 15 O -0.630 6.630 16 N -0.730 5.730 17 C 0.153 3.847 18 C -0.098 4.098 19 C 0.025 3.975 20 C -0.542 4.542 21 H 0.067 0.933 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.265 1.265 28 C 0.097 3.903 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.408 0.592 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.067 0.933 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.078 0.922 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 3.927 -24.654 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.140 4.140 5 C 0.090 3.910 6 H 0.085 0.915 7 C -0.094 4.094 8 C -0.134 4.134 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.145 4.145 12 C -0.141 4.141 13 N -0.362 5.362 14 C 0.417 3.583 15 O -0.511 6.511 16 N -0.386 5.386 17 C 0.028 3.972 18 C -0.136 4.136 19 C -0.012 4.012 20 C -0.580 4.580 21 H 0.086 0.914 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.792 3.208 25 H -0.190 1.190 26 H -0.212 1.212 27 H -0.189 1.189 28 C -0.025 4.025 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.244 0.756 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.009 0.991 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.129 3.618 -24.833 30.959 hybrid contribution 0.394 -0.143 1.333 1.398 sum -17.735 3.474 -23.500 29.645 Atomic orbital electron populations 1.21704 0.91145 1.02789 1.03220 1.21706 0.97088 0.94917 0.92971 1.21762 1.00079 0.94409 1.03046 1.22830 0.92189 1.00484 0.98481 1.20394 0.99711 0.92359 0.78561 0.91487 1.20228 0.97551 0.95604 0.96038 1.20960 1.00394 0.92782 0.99253 1.21385 0.99277 0.97094 0.97469 1.21435 0.97476 0.99970 0.96105 1.21412 0.99911 0.92423 1.00712 1.21205 0.97819 0.98051 0.97066 1.47552 1.11986 1.70792 1.05826 1.15638 0.83037 0.78312 0.81354 1.90897 1.27681 1.56280 1.76241 1.45059 1.16941 1.73000 1.03631 1.21046 0.88269 0.99011 0.88886 1.21576 0.99277 1.01767 0.90997 1.18920 0.93548 0.94850 0.93916 1.21645 0.98786 1.45345 0.92195 0.91443 1.26044 0.94887 0.94746 1.04449 1.70112 1.06405 1.47069 1.34016 0.85454 0.77850 0.79178 0.78284 1.18951 1.21171 1.18941 1.22716 0.82123 0.98855 0.98765 0.91498 0.90896 0.91886 0.94295 0.90676 0.91817 0.88000 0.89562 0.86905 0.85078 0.84240 0.84073 0.85174 0.75585 0.93894 0.93699 0.91347 0.91431 0.99100 0.99020 0.92794 0.90348 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.66 71.98 0.62 -0.31 16 2 C -0.07 -0.73 0.96 -50.79 -0.05 -0.78 16 3 C -0.14 -1.57 8.61 71.98 0.62 -0.95 16 4 C -0.10 -1.29 5.44 31.78 0.17 -1.12 16 5 C 0.19 4.08 2.67 44.60 0.12 4.20 16 6 H 0.07 1.57 8.03 -2.39 -0.02 1.55 16 7 C -0.09 -2.24 4.09 -19.86 -0.08 -2.32 16 8 C -0.12 -2.84 9.14 22.27 0.20 -2.64 16 9 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 10 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 11 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 12 C -0.12 -2.79 9.68 22.27 0.22 -2.58 16 13 N -0.62 -14.77 2.29 -810.03 -1.86 -16.63 16 14 C 0.71 23.68 8.10 179.05 1.45 25.13 16 15 O -0.63 -27.03 16.17 -3.96 -0.06 -27.09 16 16 N -0.73 -22.57 5.52 -478.54 -2.64 -25.21 16 17 C 0.15 5.82 5.67 86.38 0.49 6.31 16 18 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 19 C 0.03 1.35 4.97 29.85 0.15 1.50 16 20 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 23 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 24 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.10 1.51 5.50 86.86 0.48 1.98 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 0.44 8.11 -2.38 -0.02 0.42 16 32 H 0.04 0.62 7.81 -2.39 -0.02 0.60 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.09 1.05 7.70 -2.39 -0.02 1.03 16 37 H 0.11 2.69 7.67 -2.91 -0.02 2.67 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.13 2.50 8.05 -2.91 -0.02 2.48 16 42 H 0.41 9.89 6.95 -92.71 -0.64 9.25 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 47 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 50 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 51 H 0.08 1.17 7.21 -2.39 -0.02 1.15 16 Total: -1.00 -75.56 410.85 3.91 -71.65 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.24 Total: 22.07 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.92 Total: -13.22 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.21 Total: -99.48 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.09 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.56 3.91 -71.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425444684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds