Wall clock time and date at job start Tue Mar 31 2020 15:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 110.01702 * 2 1 4 4 C 1.54265 * 110.03031 * 238.55790 * 2 1 3 5 5 C 1.54893 * 104.19706 * 264.32391 * 4 2 1 6 6 C 1.54894 * 102.74812 * 322.06245 * 5 4 2 7 7 C 1.53871 * 110.03320 * 121.39083 * 2 1 3 8 8 H 1.08997 * 110.03647 * 238.61671 * 7 2 1 9 9 N 1.46508 * 110.03428 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99793 * 102.23427 * 9 7 2 11 11 C 1.50693 * 109.47401 * 266.23323 * 10 9 7 12 12 C 1.38234 * 120.00154 * 124.93187 * 11 10 9 13 13 C 1.38238 * 120.00636 * 180.02562 * 12 11 10 14 14 C 1.38238 * 119.99311 * 359.95283 * 13 12 11 15 15 C 1.38233 * 120.00062 * 0.28110 * 14 13 12 16 16 C 1.38233 * 120.00368 * 359.50538 * 15 14 13 17 17 C 1.34771 * 119.99944 * 282.24483 * 9 7 2 18 18 O 1.21592 * 120.00162 * 184.16057 * 17 9 7 19 19 N 1.34780 * 120.00168 * 4.15396 * 17 9 7 20 20 C 1.46499 * 120.00267 * 186.71295 * 19 17 9 21 21 C 1.50696 * 109.47139 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00318 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99902 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00028 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00047 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46926 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47253 * 119.99931 * 25 23 21 28 28 H 1.48501 * 109.47220 * 239.99790 * 25 23 21 29 29 H 1.09000 * 109.47364 * 298.52934 * 1 2 3 30 30 H 1.09001 * 109.47417 * 58.53116 * 1 2 3 31 31 H 1.09008 * 109.47191 * 178.53094 * 1 2 3 32 32 H 1.09002 * 109.47465 * 185.02135 * 3 2 1 33 33 H 1.09001 * 109.47130 * 305.02022 * 3 2 1 34 34 H 1.08999 * 109.47232 * 65.01689 * 3 2 1 35 35 H 1.08994 * 110.49059 * 23.00347 * 4 2 1 36 36 H 1.09000 * 110.48658 * 145.51853 * 4 2 1 37 37 H 1.09005 * 110.75766 * 80.36845 * 5 4 2 38 38 H 1.08996 * 110.75682 * 203.74614 * 5 4 2 39 39 H 1.09001 * 110.48528 * 279.26124 * 6 5 4 40 40 H 1.08998 * 110.48466 * 156.62348 * 6 5 4 41 41 H 1.09000 * 109.46780 * 146.23478 * 10 9 7 42 42 H 1.08996 * 109.47469 * 26.23947 * 10 9 7 43 43 H 1.08002 * 120.00047 * 359.97438 * 12 11 10 44 44 H 1.07995 * 120.00173 * 179.97438 * 13 12 11 45 45 H 1.07999 * 119.99618 * 180.02562 * 14 13 12 46 46 H 1.08001 * 119.99820 * 179.72245 * 15 14 13 47 47 H 1.07995 * 120.00056 * 180.25548 * 16 15 14 48 48 H 0.97001 * 119.99700 * 6.70478 * 19 17 9 49 49 H 1.08997 * 109.46753 * 300.00059 * 20 19 17 50 50 H 1.09000 * 109.47270 * 59.99312 * 20 19 17 51 51 H 0.96995 * 120.00504 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 2.3280 -2.1905 -0.7182 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7530 1.2340 8 1 2.6860 -0.0943 1.8329 9 7 0.9359 -1.2437 2.0394 10 6 0.5479 -2.6547 1.9719 11 6 -0.5453 -2.8268 0.9491 12 6 -0.3883 -3.7308 -0.0849 13 6 -1.3909 -3.8883 -1.0235 14 6 -2.5509 -3.1425 -0.9275 15 6 -2.7058 -2.2351 0.1037 16 6 -1.7051 -2.0808 1.0448 17 6 0.2614 -0.3969 2.8420 18 8 -0.6195 -0.8179 3.5668 19 7 0.5632 0.9167 2.8415 20 6 -0.0645 1.8129 3.8157 21 6 0.4387 3.2174 3.6031 22 1 1.1548 3.4220 2.8209 23 6 -0.0151 4.2414 4.4073 24 7 -0.8874 3.9924 5.3595 25 14 0.6092 5.9822 4.1443 26 1 1.5772 5.9961 3.0183 27 1 -0.5339 6.8752 3.8260 28 1 1.2808 6.4592 5.3799 29 1 -0.3634 0.4908 0.9029 30 1 -0.3634 0.5365 -0.8765 31 1 -0.3634 -1.0274 -0.0263 32 1 3.1400 1.4285 -0.0899 33 1 1.6239 1.9808 -0.8416 34 1 1.7703 1.9275 0.9315 35 1 1.3061 -0.7705 -2.0251 36 1 2.9798 -0.2994 -1.5979 37 1 1.4030 -2.7655 -0.6738 38 1 3.0675 -2.6937 -1.3411 39 1 3.9439 -1.6764 0.6579 40 1 2.7401 -2.8192 1.3322 41 1 0.1867 -2.9792 2.9478 42 1 1.4111 -3.2557 1.6858 43 1 0.5180 -4.3134 -0.1600 44 1 -1.2680 -4.5942 -1.8315 45 1 -3.3343 -3.2659 -1.6606 46 1 -3.6102 -1.6493 0.1762 47 1 -1.8280 -1.3748 1.8528 48 1 1.1961 1.2686 2.1961 49 1 -1.1463 1.7913 3.6849 50 1 0.1861 1.4856 4.8247 51 1 -1.2070 4.7128 5.9250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426415148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:32 Heat of formation + Delta-G solvation = -1.897703 kcal Electronic energy + Delta-G solvation = -31025.595071 eV Core-core repulsion = 27310.774104 eV Total energy + Delta-G solvation = -3714.820968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.38726 -39.92076 -39.35481 -36.47521 -35.46762 -34.54091 -33.20134 -32.52905 -31.66708 -29.41627 -28.80182 -28.10767 -27.02070 -25.34185 -24.35367 -23.47872 -22.35511 -22.04154 -20.75558 -20.00623 -19.02023 -18.10790 -17.80588 -17.47092 -16.88945 -16.50968 -16.20034 -16.00331 -15.74609 -15.54473 -15.10040 -14.85291 -14.75207 -14.52067 -14.32342 -14.19554 -14.06098 -13.74735 -13.58350 -13.40311 -13.09600 -12.85671 -12.79166 -12.71293 -12.49771 -12.32402 -12.24883 -12.06575 -11.87000 -11.72112 -11.64570 -11.51325 -11.44425 -11.32266 -11.27005 -11.05021 -10.82063 -9.91718 -9.67090 -9.45676 -9.35658 -8.31042 -6.47715 0.43433 0.54846 1.39309 1.41128 1.54294 1.86312 2.23878 2.35671 2.95625 3.03503 3.21006 3.55848 3.57095 3.90407 3.95743 3.99148 4.20532 4.26259 4.30520 4.35011 4.35431 4.48169 4.51071 4.60452 4.62263 4.68658 4.73721 4.78408 4.81894 4.93586 4.97931 5.03094 5.08272 5.12717 5.15686 5.19294 5.21381 5.24102 5.33409 5.36757 5.40874 5.43655 5.49609 5.58857 5.63732 5.64804 5.69906 5.74482 5.84407 5.87325 6.16582 6.18373 6.63502 7.20587 7.23636 7.74139 8.81576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004143 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.984353 B = 6756.064496 C = 7491.207680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.126 4.126 7 C 0.131 3.869 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.155 3.845 11 C -0.102 4.102 12 C -0.104 4.104 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.144 4.144 16 C -0.117 4.117 17 C 0.698 3.302 18 O -0.642 6.642 19 N -0.729 5.729 20 C 0.287 3.713 21 C -0.553 4.553 22 H 0.076 0.924 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.982 3.018 26 H -0.254 1.254 27 H -0.278 1.278 28 H -0.275 1.275 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.141 0.859 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.401 0.599 49 H -0.019 1.019 50 H -0.016 1.016 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.906 -16.542 -19.178 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.082 4.082 3 C -0.206 4.206 4 C -0.140 4.140 5 C -0.168 4.168 6 C -0.163 4.163 7 C 0.028 3.972 8 H 0.086 0.914 9 N -0.343 5.343 10 C 0.033 3.967 11 C -0.103 4.103 12 C -0.122 4.122 13 C -0.138 4.138 14 C -0.137 4.137 15 C -0.163 4.163 16 C -0.136 4.136 17 C 0.400 3.600 18 O -0.525 6.525 19 N -0.387 5.387 20 C 0.163 3.837 21 C -0.590 4.590 22 H 0.094 0.906 23 C -0.192 4.192 24 N -0.567 5.567 25 Si 0.805 3.195 26 H -0.178 1.178 27 H -0.203 1.203 28 H -0.200 1.200 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.173 0.827 45 H 0.158 0.842 46 H 0.129 0.871 47 H 0.105 0.895 48 H 0.242 0.758 49 H -0.001 1.001 50 H 0.001 0.999 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.223 -16.733 -18.470 26.244 hybrid contribution -0.538 1.842 0.718 2.049 sum 7.685 -14.891 -17.752 24.412 Atomic orbital electron populations 1.22545 0.95697 1.03996 0.99636 1.21639 0.95033 0.95380 0.96175 1.22089 1.02179 0.95395 1.00902 1.22369 1.00944 0.95610 0.95062 1.22819 1.02294 0.96627 0.95036 1.22796 0.99697 0.96399 0.97427 1.22111 0.86519 0.97537 0.91062 0.91431 1.47126 1.33899 1.08355 1.44945 1.20584 0.97077 0.81248 0.97789 1.20253 0.95070 0.97327 0.97644 1.21272 1.00270 0.97573 0.93126 1.21462 0.93017 0.99675 0.99628 1.21395 0.99004 0.95721 0.97630 1.21247 0.98851 1.00076 0.96087 1.21186 0.94631 0.99159 0.98587 1.16166 0.81594 0.81806 0.80422 1.90809 1.36429 1.77821 1.47432 1.45876 1.48631 1.06008 1.38228 1.18358 0.91284 0.87980 0.86062 1.21529 1.27051 0.92226 1.18230 0.90630 1.26028 0.94644 1.04491 0.94068 1.70146 1.31579 1.34680 1.20294 0.85149 0.78384 0.77228 0.78721 1.17763 1.20317 1.20044 0.95522 0.94244 0.89131 0.90010 0.91917 0.95022 0.91972 0.89983 0.90165 0.88855 0.88318 0.89072 0.91661 0.84734 0.82488 0.82740 0.84167 0.87093 0.89456 0.75826 1.00142 0.99854 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 6.44 71.98 0.46 -4.63 16 2 C -0.08 -1.98 0.64 -51.46 -0.03 -2.01 16 3 C -0.15 -3.78 8.07 71.98 0.58 -3.20 16 4 C -0.10 -1.74 5.90 31.67 0.19 -1.55 16 5 C -0.13 -1.70 6.73 31.89 0.21 -1.48 16 6 C -0.13 -1.92 5.83 31.67 0.18 -1.74 16 7 C 0.13 3.28 2.54 45.71 0.12 3.40 16 8 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 9 N -0.61 -19.50 1.68 -816.01 -1.37 -20.87 16 10 C 0.16 4.13 5.04 85.63 0.43 4.56 16 11 C -0.10 -2.62 3.47 -19.87 -0.07 -2.69 16 12 C -0.10 -1.84 7.32 22.27 0.16 -1.68 16 13 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 14 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 15 C -0.14 -4.04 10.00 22.27 0.22 -3.82 16 16 C -0.12 -3.85 6.58 22.27 0.15 -3.71 16 17 C 0.70 31.37 5.41 179.05 0.97 32.34 16 18 O -0.64 -34.46 14.18 -4.01 -0.06 -34.51 16 19 N -0.73 -34.77 4.19 -482.30 -2.02 -36.79 16 20 C 0.29 16.89 5.44 85.63 0.47 17.36 16 21 C -0.55 -31.69 9.28 25.60 0.24 -31.45 16 22 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 23 C 0.01 0.43 5.46 84.65 0.46 0.89 16 24 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 25 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 26 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 29 H 0.03 1.05 4.84 -2.39 -0.01 1.04 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 2.71 2.97 -2.38 -0.01 2.70 16 32 H 0.08 1.64 8.04 -2.39 -0.02 1.63 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 1.02 5.36 -2.39 -0.01 1.00 16 35 H 0.06 1.11 7.84 -2.39 -0.02 1.09 16 36 H 0.08 1.15 7.78 -2.39 -0.02 1.13 16 37 H 0.08 1.10 3.61 -2.38 -0.01 1.09 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.22 5.33 -2.39 -0.01 1.21 16 41 H 0.07 2.09 7.48 -2.39 -0.02 2.07 16 42 H 0.14 2.35 4.66 -2.39 -0.01 2.34 16 43 H 0.16 1.65 7.20 -2.91 -0.02 1.63 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 46 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 47 H 0.09 3.79 5.38 -2.91 -0.02 3.77 16 48 H 0.40 16.86 3.01 -92.71 -0.28 16.58 16 49 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 50 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 51 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.58 367.88 4.72 -72.86 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.67 Total: 34.33 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.19 Total: -3.38 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.11 Total: -114.96 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.06 Total: -34.51 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -77.58 4.72 -72.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426415148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.958 kcal (2) G-P(sol) polarization free energy of solvation -77.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds