Wall clock time and date at job start Tue Mar 31 2020 15:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.05833 * 2 1 4 4 C 1.54275 * 110.02830 * 121.41311 * 2 1 3 5 5 C 1.54884 * 104.19677 * 95.67488 * 4 2 1 6 6 C 1.54896 * 102.74817 * 37.94212 * 5 4 2 7 7 C 1.53871 * 110.03609 * 238.57513 * 2 1 3 8 8 H 1.09001 * 110.03182 * 0.02562 * 7 2 1 9 9 N 1.46903 * 110.02857 * 121.43247 * 7 2 1 10 10 C 1.46900 * 111.00141 * 226.54359 * 9 7 2 11 11 C 1.50704 * 109.47137 * 76.25983 * 10 9 7 12 12 O 1.21294 * 119.99687 * 5.59070 * 11 10 9 13 13 N 1.34773 * 120.00084 * 185.59290 * 11 10 9 14 14 C 1.37099 * 120.00015 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00050 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99929 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47480 * 120.00104 * 18 16 14 21 21 H 1.48504 * 109.47177 * 240.00381 * 18 16 14 22 22 C 1.46903 * 110.99687 * 102.59074 * 9 7 2 23 23 C 1.50697 * 109.47192 * 281.29199 * 22 9 7 24 24 C 1.38242 * 120.00066 * 285.87869 * 23 22 9 25 25 C 1.38236 * 119.99849 * 179.76560 * 24 23 22 26 26 C 1.38231 * 119.99941 * 0.48611 * 25 24 23 27 27 C 1.38238 * 120.00281 * 359.78937 * 26 25 24 28 28 C 1.38232 * 120.00213 * 106.15348 * 23 22 9 29 29 H 1.08998 * 109.47619 * 300.04241 * 1 2 3 30 30 H 1.09004 * 109.46615 * 60.04072 * 1 2 3 31 31 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47480 * 172.65084 * 3 2 1 33 33 H 1.08998 * 109.47057 * 292.65253 * 3 2 1 34 34 H 1.09007 * 109.46926 * 52.64567 * 3 2 1 35 35 H 1.09001 * 110.48503 * 214.35502 * 4 2 1 36 36 H 1.09000 * 110.48690 * 336.86328 * 4 2 1 37 37 H 1.08999 * 110.75667 * 156.25420 * 5 4 2 38 38 H 1.08998 * 110.75860 * 279.63245 * 5 4 2 39 39 H 1.08999 * 110.48365 * 80.73388 * 6 5 4 40 40 H 1.08997 * 110.48510 * 203.24231 * 6 5 4 41 41 H 1.08998 * 109.47070 * 196.26298 * 10 9 7 42 42 H 1.09002 * 109.46999 * 316.26491 * 10 9 7 43 43 H 0.97002 * 119.99694 * 0.02562 * 13 11 10 44 44 H 0.96995 * 119.99773 * 180.02562 * 17 16 14 45 45 H 1.08996 * 109.47253 * 41.29527 * 22 9 7 46 46 H 1.09003 * 109.46768 * 161.29069 * 22 9 7 47 47 H 1.08000 * 119.99658 * 359.97438 * 24 23 22 48 48 H 1.07995 * 119.99822 * 180.25276 * 25 24 23 49 49 H 1.08000 * 119.99795 * 179.76994 * 26 25 24 50 50 H 1.08001 * 120.00272 * 179.97438 * 27 26 25 51 51 H 1.08005 * 119.99436 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0584 -0.7555 1.2370 5 6 2.3280 -2.1901 0.7194 6 6 2.8875 -1.9407 -0.7033 7 6 2.0572 -0.7537 -1.2335 8 1 1.2230 -1.1191 -1.8325 9 7 2.9058 0.1334 -2.0405 10 6 2.5572 0.0431 -3.4647 11 6 1.2831 0.8066 -3.7194 12 8 0.7755 1.4539 -2.8280 13 7 0.7078 0.7703 -4.9376 14 6 -0.4516 1.4644 -5.1691 15 1 -0.9040 2.0401 -4.3753 16 6 -1.0445 1.4273 -6.4253 17 7 -0.4942 0.7264 -7.3912 18 14 -2.6237 2.3737 -6.7410 19 1 -3.0354 3.0777 -5.4999 20 1 -2.3980 3.3672 -7.8213 21 1 -3.6930 1.4290 -7.1527 22 6 4.3288 -0.1621 -1.8270 23 6 4.7807 0.4548 -0.5285 24 6 4.9705 1.8214 -0.4416 25 6 5.3803 2.3878 0.7509 26 6 5.6100 1.5866 1.8537 27 6 5.4258 0.2194 1.7652 28 6 5.0110 -0.3464 0.5742 29 1 -0.3634 0.5145 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 3.1367 1.4290 0.1314 33 1 1.8076 1.9142 -0.9484 34 1 1.5936 1.9923 0.8169 35 1 2.9810 -0.3000 1.5968 36 1 1.3069 -0.7675 2.0264 37 1 3.0674 -2.6931 1.3426 38 1 1.4030 -2.7651 0.6753 39 1 3.9440 -1.6767 -0.6568 40 1 2.7423 -2.8207 -1.3299 41 1 3.3621 0.4693 -4.0634 42 1 2.4151 -1.0024 -3.7384 43 1 1.1136 0.2523 -5.6503 44 1 -0.9079 0.7009 -8.2681 45 1 4.4737 -1.2416 -1.7862 46 1 4.9131 0.2520 -2.6488 47 1 4.7952 2.4468 -1.3045 48 1 5.5246 3.4559 0.8199 49 1 5.9338 2.0288 2.7843 50 1 5.6057 -0.4066 2.6267 51 1 4.8666 -1.4145 0.5051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426797942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:27 Heat of formation + Delta-G solvation = 29.537994 kcal Electronic energy + Delta-G solvation = -30684.921004 eV Core-core repulsion = 26971.463191 eV Total energy + Delta-G solvation = -3713.457813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85791 -38.51123 -37.69790 -35.35404 -33.81176 -32.21171 -31.64291 -31.09771 -30.60875 -28.17764 -26.84749 -26.54961 -25.16133 -24.16603 -22.85731 -22.54941 -21.40820 -19.75521 -19.12099 -18.02775 -17.70168 -16.98356 -15.94212 -15.84265 -15.56142 -15.13653 -14.75159 -14.45330 -14.33734 -13.91765 -13.66699 -13.54403 -13.37900 -13.24748 -12.96855 -12.91257 -12.65568 -12.20808 -12.03159 -11.84810 -11.66931 -11.48980 -11.21968 -11.14940 -11.02586 -10.92922 -10.81399 -10.71894 -10.70241 -10.31545 -10.17532 -10.06059 -9.98329 -9.85648 -9.69470 -9.42904 -8.70765 -8.42525 -8.32328 -7.88580 -7.66977 -6.36547 -3.76481 1.42305 1.49756 3.18984 3.29233 3.36227 3.75354 3.99759 4.15569 4.32512 4.76473 4.84643 4.87247 4.90090 5.04418 5.06900 5.17759 5.20761 5.29269 5.40376 5.50959 5.58889 5.61997 5.65731 5.67357 5.75725 5.81569 5.84016 5.88649 5.94104 5.98743 6.02058 6.08485 6.11690 6.22229 6.27742 6.28965 6.37627 6.44562 6.49512 6.54676 6.59194 6.67562 6.73727 6.85282 6.89303 7.06630 7.11667 7.40550 7.47238 7.56753 7.62111 8.13280 8.70384 9.25720 9.62417 10.16042 10.81642 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003517 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.438359 B = 7958.762075 C = 8282.675968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.037 4.037 3 C -0.146 4.146 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.188 4.188 7 C 0.102 3.898 8 H 0.071 0.929 9 N -0.495 5.495 10 C 0.041 3.959 11 C 0.446 3.554 12 O -0.562 6.562 13 N -0.571 5.571 14 C -0.293 4.293 15 H 0.103 0.897 16 C 0.020 3.980 17 N -0.905 5.905 18 Si 0.926 3.074 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.070 3.930 23 C -0.061 4.061 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.118 4.118 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.390 0.610 44 H 0.269 0.731 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.124 0.876 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.817 -4.824 14.689 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.203 4.203 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.225 4.225 7 C -0.007 4.007 8 H 0.090 0.910 9 N -0.217 5.217 10 C -0.090 4.090 11 C 0.231 3.769 12 O -0.445 6.445 13 N -0.208 5.208 14 C -0.422 4.422 15 H 0.120 0.880 16 C -0.181 4.181 17 N -0.547 5.547 18 Si 0.753 3.247 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.057 4.057 23 C -0.061 4.061 24 C -0.102 4.102 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.136 4.136 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.034 0.966 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.223 0.777 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.142 0.858 48 H 0.136 0.864 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.293 -3.909 15.222 19.953 hybrid contribution -0.667 -0.777 -1.001 1.432 sum 11.626 -4.686 14.221 18.957 Atomic orbital electron populations 1.21911 0.95126 1.00185 1.02351 1.20846 0.94542 0.96484 0.91930 1.22294 1.01503 0.94124 1.02339 1.22715 1.01049 0.94891 0.97655 1.22347 1.00061 0.97361 0.95720 1.23750 1.03013 0.98610 0.97166 1.22324 0.94470 0.89296 0.94582 0.91043 1.61831 1.01122 1.52955 1.05749 1.22036 0.98647 0.99036 0.89272 1.19769 0.86845 0.86420 0.83890 1.90474 1.65041 1.45221 1.43716 1.41879 1.23597 1.45097 1.10258 1.19709 0.99908 1.25534 0.97070 0.87952 1.25216 0.99633 0.97857 0.95367 1.69619 1.40582 1.41344 1.03126 0.85852 0.81240 0.79087 0.78478 1.19291 1.20870 1.20903 1.21451 0.90102 0.99097 0.95062 1.19654 0.97573 0.93825 0.95098 1.20947 0.96703 0.94501 0.98007 1.21104 1.00514 0.99664 0.93252 1.21055 1.00891 0.93925 0.98356 1.21008 1.00770 0.95091 0.97558 1.21193 0.99717 0.99845 0.92816 0.93963 0.90584 0.94353 0.91035 0.88840 0.96570 0.90861 0.92766 0.92420 0.92098 0.87651 0.92437 0.89640 0.93515 0.77731 0.92098 0.91884 0.90263 0.85795 0.86424 0.86724 0.86645 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.15 37.16 0.30 -2.05 16 2 C -0.04 -0.58 0.85 -153.39 -0.13 -0.71 16 3 C -0.15 -2.49 7.35 37.16 0.27 -2.21 16 4 C -0.13 -1.64 5.42 -25.07 -0.14 -1.78 16 5 C -0.12 -1.35 6.33 -24.74 -0.16 -1.51 16 6 C -0.19 -2.30 4.89 -25.07 -0.12 -2.42 16 7 C 0.10 1.57 2.04 -66.60 -0.14 1.43 16 8 H 0.07 1.30 6.84 -51.93 -0.36 0.94 16 9 N -0.49 -7.60 2.15 -228.18 -0.49 -8.09 16 10 C 0.04 0.70 5.30 -4.97 -0.03 0.68 16 11 C 0.45 10.02 7.36 -10.99 -0.08 9.94 16 12 O -0.56 -14.08 12.35 5.55 0.07 -14.02 16 13 N -0.57 -14.11 5.29 -10.96 -0.06 -14.17 16 14 C -0.29 -8.04 9.68 -14.93 -0.14 -8.18 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.02 0.54 5.50 -17.47 -0.10 0.44 16 17 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 18 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.07 0.86 4.87 -4.98 -0.02 0.84 16 23 C -0.06 -0.73 3.22 -104.62 -0.34 -1.07 16 24 C -0.08 -1.02 7.55 -39.58 -0.30 -1.32 16 25 C -0.13 -1.41 9.81 -39.58 -0.39 -1.80 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.13 -1.27 9.25 -39.58 -0.37 -1.64 16 28 C -0.12 -1.27 6.06 -39.59 -0.24 -1.51 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.09 2.06 -51.93 -0.11 0.98 16 33 H 0.09 1.92 5.32 -51.93 -0.28 1.65 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.94 4.63 -51.93 -0.24 0.70 16 36 H 0.05 0.70 7.84 -51.93 -0.41 0.29 16 37 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.17 1.51 -51.93 -0.08 1.09 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.31 7.55 -51.93 -0.39 0.91 16 42 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.06 0.70 5.06 -51.93 -0.26 0.44 16 46 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 47 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 49 H 0.11 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 51 H 0.13 1.22 5.34 -52.48 -0.28 0.94 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -29.30 370.32 -9.32 -38.63 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -7.62 Total: 14.39 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.51 Total: -14.55 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.18 Total: -46.18 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.30 -9.32 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426797942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.166 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds