Wall clock time and date at job start Tue Mar 31 2020 15:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.05833 * 2 1 4 4 C 1.54275 * 110.02830 * 121.41311 * 2 1 3 5 5 C 1.54884 * 104.19677 * 95.67488 * 4 2 1 6 6 C 1.54896 * 102.74817 * 37.94212 * 5 4 2 7 7 C 1.53871 * 110.03609 * 238.57513 * 2 1 3 8 8 H 1.09001 * 110.03182 * 0.02562 * 7 2 1 9 9 N 1.46903 * 110.02857 * 121.43247 * 7 2 1 10 10 C 1.46900 * 111.00141 * 226.54359 * 9 7 2 11 11 C 1.50704 * 109.47137 * 76.25983 * 10 9 7 12 12 O 1.21294 * 119.99687 * 5.59070 * 11 10 9 13 13 N 1.34773 * 120.00084 * 185.59290 * 11 10 9 14 14 C 1.37099 * 120.00015 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00050 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99929 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47480 * 120.00104 * 18 16 14 21 21 H 1.48504 * 109.47177 * 240.00381 * 18 16 14 22 22 C 1.46903 * 110.99687 * 102.59074 * 9 7 2 23 23 C 1.50697 * 109.47192 * 281.29199 * 22 9 7 24 24 C 1.38242 * 120.00066 * 285.87869 * 23 22 9 25 25 C 1.38236 * 119.99849 * 179.76560 * 24 23 22 26 26 C 1.38231 * 119.99941 * 0.48611 * 25 24 23 27 27 C 1.38238 * 120.00281 * 359.78937 * 26 25 24 28 28 C 1.38232 * 120.00213 * 106.15348 * 23 22 9 29 29 H 1.08998 * 109.47619 * 300.04241 * 1 2 3 30 30 H 1.09004 * 109.46615 * 60.04072 * 1 2 3 31 31 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47480 * 172.65084 * 3 2 1 33 33 H 1.08998 * 109.47057 * 292.65253 * 3 2 1 34 34 H 1.09007 * 109.46926 * 52.64567 * 3 2 1 35 35 H 1.09001 * 110.48503 * 214.35502 * 4 2 1 36 36 H 1.09000 * 110.48690 * 336.86328 * 4 2 1 37 37 H 1.08999 * 110.75667 * 156.25420 * 5 4 2 38 38 H 1.08998 * 110.75860 * 279.63245 * 5 4 2 39 39 H 1.08999 * 110.48365 * 80.73388 * 6 5 4 40 40 H 1.08997 * 110.48510 * 203.24231 * 6 5 4 41 41 H 1.08998 * 109.47070 * 196.26298 * 10 9 7 42 42 H 1.09002 * 109.46999 * 316.26491 * 10 9 7 43 43 H 0.97002 * 119.99694 * 0.02562 * 13 11 10 44 44 H 0.96995 * 119.99773 * 180.02562 * 17 16 14 45 45 H 1.08996 * 109.47253 * 41.29527 * 22 9 7 46 46 H 1.09003 * 109.46768 * 161.29069 * 22 9 7 47 47 H 1.08000 * 119.99658 * 359.97438 * 24 23 22 48 48 H 1.07995 * 119.99822 * 180.25276 * 25 24 23 49 49 H 1.08000 * 119.99795 * 179.76994 * 26 25 24 50 50 H 1.08001 * 120.00272 * 179.97438 * 27 26 25 51 51 H 1.08005 * 119.99436 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0584 -0.7555 1.2370 5 6 2.3280 -2.1901 0.7194 6 6 2.8875 -1.9407 -0.7033 7 6 2.0572 -0.7537 -1.2335 8 1 1.2230 -1.1191 -1.8325 9 7 2.9058 0.1334 -2.0405 10 6 2.5572 0.0431 -3.4647 11 6 1.2831 0.8066 -3.7194 12 8 0.7755 1.4539 -2.8280 13 7 0.7078 0.7703 -4.9376 14 6 -0.4516 1.4644 -5.1691 15 1 -0.9040 2.0401 -4.3753 16 6 -1.0445 1.4273 -6.4253 17 7 -0.4942 0.7264 -7.3912 18 14 -2.6237 2.3737 -6.7410 19 1 -3.0354 3.0777 -5.4999 20 1 -2.3980 3.3672 -7.8213 21 1 -3.6930 1.4290 -7.1527 22 6 4.3288 -0.1621 -1.8270 23 6 4.7807 0.4548 -0.5285 24 6 4.9705 1.8214 -0.4416 25 6 5.3803 2.3878 0.7509 26 6 5.6100 1.5866 1.8537 27 6 5.4258 0.2194 1.7652 28 6 5.0110 -0.3464 0.5742 29 1 -0.3634 0.5145 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 3.1367 1.4290 0.1314 33 1 1.8076 1.9142 -0.9484 34 1 1.5936 1.9923 0.8169 35 1 2.9810 -0.3000 1.5968 36 1 1.3069 -0.7675 2.0264 37 1 3.0674 -2.6931 1.3426 38 1 1.4030 -2.7651 0.6753 39 1 3.9440 -1.6767 -0.6568 40 1 2.7423 -2.8207 -1.3299 41 1 3.3621 0.4693 -4.0634 42 1 2.4151 -1.0024 -3.7384 43 1 1.1136 0.2523 -5.6503 44 1 -0.9079 0.7009 -8.2681 45 1 4.4737 -1.2416 -1.7862 46 1 4.9131 0.2520 -2.6488 47 1 4.7952 2.4468 -1.3045 48 1 5.5246 3.4559 0.8199 49 1 5.9338 2.0288 2.7843 50 1 5.6057 -0.4066 2.6267 51 1 4.8666 -1.4145 0.5051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426797942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:26 Heat of formation + Delta-G solvation = 14.088632 kcal Electronic energy + Delta-G solvation = -30685.590939 eV Core-core repulsion = 26971.463191 eV Total energy + Delta-G solvation = -3714.127748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93564 -39.89885 -39.06618 -36.60031 -35.76657 -33.33017 -33.19220 -32.55279 -31.48210 -29.49635 -28.03757 -27.89679 -26.72678 -25.60537 -24.04192 -23.45988 -22.30685 -21.00154 -20.67095 -19.85064 -19.11183 -18.02657 -17.43489 -16.93959 -16.83407 -16.43574 -16.06703 -15.74575 -15.68988 -15.44642 -15.18386 -14.67563 -14.58156 -14.36920 -14.21129 -13.90970 -13.79364 -13.64568 -13.47163 -13.25538 -13.16866 -12.93598 -12.83065 -12.38305 -12.36001 -12.22502 -12.12933 -11.99734 -11.80477 -11.73976 -11.70231 -11.43142 -11.28362 -11.15995 -11.02544 -10.84082 -10.11561 -9.90917 -9.54924 -9.33238 -8.91954 -8.41951 -5.88591 0.57628 0.66280 1.35892 1.40136 1.53830 2.17657 2.29940 2.74854 3.17880 3.25645 3.50645 3.69572 3.79993 3.95271 3.99884 4.16913 4.28797 4.33409 4.34769 4.41325 4.44830 4.51313 4.52378 4.57430 4.61002 4.65038 4.68235 4.77295 4.78318 4.88620 4.92253 5.00540 5.05916 5.11969 5.18280 5.21021 5.26702 5.30465 5.37070 5.38938 5.45087 5.52535 5.57519 5.69695 5.77520 5.81795 5.84627 5.99433 6.08359 6.22415 6.27117 6.37220 6.70472 7.22114 7.67086 8.25912 8.76099 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003517 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.438359 B = 7958.762075 C = 8282.675968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.180 4.180 7 C 0.101 3.899 8 H 0.035 0.965 9 N -0.508 5.508 10 C 0.054 3.946 11 C 0.444 3.556 12 O -0.590 6.590 13 N -0.584 5.584 14 C -0.320 4.320 15 H 0.076 0.924 16 C -0.016 4.016 17 N -0.925 5.925 18 Si 0.987 3.013 19 H -0.276 1.276 20 H -0.272 1.272 21 H -0.273 1.273 22 C 0.069 3.931 23 C -0.073 4.073 24 C -0.104 4.104 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.118 4.118 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.005 0.995 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.392 0.608 44 H 0.274 0.726 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.676 -6.488 16.471 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.041 4.041 3 C -0.195 4.195 4 C -0.156 4.156 5 C -0.149 4.149 6 C -0.217 4.217 7 C -0.007 4.007 8 H 0.053 0.947 9 N -0.231 5.231 10 C -0.077 4.077 11 C 0.231 3.769 12 O -0.473 6.473 13 N -0.223 5.223 14 C -0.450 4.450 15 H 0.094 0.906 16 C -0.215 4.215 17 N -0.567 5.567 18 Si 0.811 3.189 19 H -0.200 1.200 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.058 4.058 23 C -0.073 4.073 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.226 0.774 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.126 0.874 48 H 0.144 0.856 49 H 0.154 0.846 50 H 0.160 0.840 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.174 -5.584 17.006 22.832 hybrid contribution -1.214 -0.191 -1.465 1.912 sum 12.961 -5.775 15.540 21.044 Atomic orbital electron populations 1.21850 0.96823 1.00101 1.00329 1.20872 0.93202 0.96093 0.93945 1.22225 1.02973 0.94744 0.99589 1.22635 1.01265 0.95589 0.96106 1.22352 1.00857 0.96283 0.95379 1.23721 1.03235 0.97159 0.97633 1.22251 0.94103 0.90521 0.93870 0.94684 1.61727 1.03065 1.53793 1.04491 1.21864 0.95955 0.98883 0.91040 1.20831 0.87945 0.85542 0.82623 1.90477 1.66225 1.46223 1.44401 1.41944 1.23465 1.45658 1.11216 1.19611 1.01583 1.26757 0.97057 0.90602 1.25926 1.02294 0.98488 0.94770 1.69681 1.41670 1.41936 1.03422 0.84957 0.77809 0.78062 0.78041 1.20042 1.19756 1.19839 1.21554 0.87852 1.00458 0.95893 1.19652 0.98465 0.93757 0.95448 1.20961 0.98175 0.94918 0.98224 1.21302 1.00433 1.00495 0.93269 1.21372 1.00071 0.94238 0.98747 1.21353 0.99496 0.95287 0.98104 1.21377 0.99264 1.00482 0.92509 0.93349 0.95107 0.93415 0.88852 0.92879 0.97563 0.90037 0.92458 0.89350 0.92386 0.86013 0.91672 0.87561 0.91970 0.77448 0.91626 0.89836 0.89583 0.87424 0.85608 0.84552 0.83977 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.15 71.98 0.59 -4.15 16 2 C -0.04 -1.26 0.85 -51.46 -0.04 -1.30 16 3 C -0.14 -4.84 7.35 71.98 0.53 -4.31 16 4 C -0.12 -2.81 5.42 31.67 0.17 -2.64 16 5 C -0.11 -2.17 6.33 31.89 0.20 -1.97 16 6 C -0.18 -3.89 4.89 31.67 0.15 -3.74 16 7 C 0.10 3.08 2.04 45.64 0.09 3.17 16 8 H 0.03 1.31 6.84 -2.39 -0.02 1.29 16 9 N -0.51 -15.55 2.15 -875.82 -1.88 -17.43 16 10 C 0.05 1.84 5.30 85.56 0.45 2.29 16 11 C 0.44 20.89 7.36 87.66 0.64 21.54 16 12 O -0.59 -31.51 12.35 -3.07 -0.04 -31.55 16 13 N -0.58 -30.15 5.29 -306.99 -1.62 -31.77 16 14 C -0.32 -18.40 9.68 84.04 0.81 -17.59 16 15 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 16 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 17 N -0.92 -50.96 13.05 21.66 0.28 -50.67 16 18 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.07 1.57 4.87 85.56 0.42 1.99 16 23 C -0.07 -1.60 3.22 -19.87 -0.06 -1.66 16 24 C -0.10 -2.50 7.55 22.27 0.17 -2.33 16 25 C -0.14 -2.85 9.81 22.27 0.22 -2.63 16 26 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 27 C -0.12 -2.01 9.25 22.27 0.21 -1.80 16 28 C -0.12 -2.12 6.06 22.27 0.13 -1.98 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.35 6.93 -2.38 -0.02 1.33 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 2.81 2.06 -2.39 0.00 2.81 16 33 H 0.05 2.30 5.32 -2.39 -0.01 2.29 16 34 H 0.01 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.08 1.81 4.63 -2.39 -0.01 1.80 16 36 H 0.06 1.34 7.84 -2.39 -0.02 1.32 16 37 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 2.23 1.51 -2.39 0.00 2.22 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 3.19 7.55 -2.39 -0.02 3.17 16 42 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.39 19.46 7.90 -92.71 -0.73 18.73 16 44 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.08 1.58 5.06 -2.39 -0.01 1.57 16 46 H 0.09 1.84 7.53 -2.39 -0.02 1.82 16 47 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 48 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 49 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 50 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 51 H 0.14 2.05 5.34 -2.91 -0.02 2.03 16 Total: -1.00 -67.16 370.32 4.37 -62.80 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.22 Total: 41.88 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.38 Total: -19.49 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.22 Total: -99.87 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.04 Total: -31.55 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.16 4.37 -62.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426797942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.884 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds