Wall clock time and date at job start Tue Mar 31 2020 15:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 110.05677 * 2 1 4 4 C 1.54258 * 110.03367 * 238.58064 * 2 1 3 5 5 C 1.54889 * 104.19759 * 264.32600 * 4 2 1 6 6 C 1.54887 * 102.74875 * 322.05774 * 5 4 2 7 7 C 1.53881 * 110.03162 * 121.41470 * 2 1 3 8 8 H 1.08999 * 110.03559 * 359.94978 * 7 2 1 9 9 N 1.46901 * 110.03187 * 238.56824 * 7 2 1 10 10 C 1.46898 * 111.00043 * 232.17914 * 9 7 2 11 11 C 1.50707 * 109.47112 * 85.12776 * 10 9 7 12 12 O 1.21293 * 119.99478 * 6.35754 * 11 10 9 13 13 N 1.34771 * 120.00298 * 186.35527 * 11 10 9 14 14 C 1.37093 * 120.00479 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99738 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00525 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00215 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99668 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46871 * 90.00564 * 18 16 14 20 20 H 1.48503 * 109.47061 * 210.00296 * 18 16 14 21 21 H 1.48500 * 109.47316 * 330.00607 * 18 16 14 22 22 C 1.46898 * 110.99996 * 108.22708 * 9 7 2 23 23 C 1.50700 * 109.47122 * 285.16545 * 22 9 7 24 24 C 1.38242 * 119.99858 * 97.95580 * 23 22 9 25 25 C 1.38235 * 119.99919 * 179.97438 * 24 23 22 26 26 C 1.38235 * 120.00136 * 359.97438 * 25 24 23 27 27 C 1.38241 * 119.99742 * 359.97438 * 26 25 24 28 28 C 1.38228 * 120.00269 * 0.08975 * 27 26 25 29 29 H 1.09003 * 109.46748 * 303.06585 * 1 2 3 30 30 H 1.08996 * 109.46763 * 63.06531 * 1 2 3 31 31 H 1.08992 * 109.46899 * 183.07201 * 1 2 3 32 32 H 1.08997 * 109.47471 * 187.42386 * 3 2 1 33 33 H 1.08998 * 109.46950 * 307.42865 * 3 2 1 34 34 H 1.09000 * 109.47321 * 67.42492 * 3 2 1 35 35 H 1.09004 * 110.48310 * 23.00577 * 4 2 1 36 36 H 1.09003 * 110.48467 * 145.51336 * 4 2 1 37 37 H 1.08998 * 110.75453 * 80.37179 * 5 4 2 38 38 H 1.09003 * 110.75408 * 203.55631 * 5 4 2 39 39 H 1.09009 * 110.48345 * 279.26090 * 6 5 4 40 40 H 1.08998 * 110.48797 * 156.62391 * 6 5 4 41 41 H 1.08997 * 109.47398 * 205.12598 * 10 9 7 42 42 H 1.08996 * 109.47053 * 325.12799 * 10 9 7 43 43 H 0.97003 * 119.99769 * 0.02562 * 13 11 10 44 44 H 0.96997 * 120.00169 * 179.97438 * 17 16 14 45 45 H 1.08997 * 109.47685 * 165.16768 * 22 9 7 46 46 H 1.09004 * 109.46977 * 45.16262 * 22 9 7 47 47 H 1.08002 * 120.00234 * 359.97438 * 24 23 22 48 48 H 1.07998 * 119.99907 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00209 * 179.72740 * 26 25 24 50 50 H 1.07998 * 119.99782 * 179.97438 * 27 26 25 51 51 H 1.08000 * 120.00466 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2367 5 6 2.3281 -2.1902 -0.7190 6 6 2.8874 -1.9406 0.7036 7 6 2.0571 -0.7536 1.2338 8 1 1.2229 -1.1185 1.8330 9 7 2.9056 0.1335 2.0407 10 6 4.2077 -0.4891 2.3144 11 6 5.1430 -0.2247 1.1627 12 8 4.8029 0.5136 0.2625 13 7 6.3573 -0.8086 1.1330 14 6 7.2084 -0.5677 0.0856 15 1 6.9056 0.0897 -0.7160 16 6 8.4602 -1.1701 0.0547 17 7 9.2762 -0.9387 -0.9490 18 14 8.9836 -2.3077 1.4408 19 1 8.5804 -3.6999 1.1175 20 1 10.4584 -2.2444 1.6029 21 1 8.3281 -1.8832 2.7039 22 6 2.2316 0.5147 3.2890 23 6 1.1612 1.5328 2.9912 24 6 -0.1553 1.1327 2.8575 25 6 -1.1372 2.0668 2.5849 26 6 -0.8029 3.4009 2.4466 27 6 0.5135 3.8011 2.5814 28 6 1.4956 2.8670 2.8526 29 1 -0.3633 0.5607 0.8613 30 1 -0.3633 0.4655 -0.9162 31 1 -0.3633 -1.0261 0.0551 32 1 3.1365 1.4291 -0.1328 33 1 1.5926 1.9927 -0.8161 34 1 1.8088 1.9139 0.9489 35 1 1.3061 -0.7696 -2.0254 36 1 2.9799 -0.2986 -1.5979 37 1 1.4031 -2.7651 -0.6750 38 1 3.0652 -2.6942 -1.3441 39 1 3.9441 -1.6767 0.6572 40 1 2.7402 -2.8197 1.3311 41 1 4.6274 -0.0672 3.2276 42 1 4.0776 -1.5643 2.4373 43 1 6.6292 -1.3993 1.8528 44 1 10.1501 -1.3589 -0.9704 45 1 2.9588 0.9432 3.9785 46 1 1.7782 -0.3675 3.7411 47 1 -0.4167 0.0905 2.9659 48 1 -2.1656 1.7541 2.4800 49 1 -1.5694 4.1300 2.2292 50 1 0.7748 4.8434 2.4729 51 1 2.5240 3.1795 2.9576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426797944.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:30 Heat of formation + Delta-G solvation = 19.276326 kcal Electronic energy + Delta-G solvation = -30749.797436 eV Core-core repulsion = 27035.894643 eV Total energy + Delta-G solvation = -3713.902793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48072 -38.91720 -37.69445 -35.45038 -33.84158 -32.38455 -31.55637 -31.10934 -30.90637 -27.86225 -27.56764 -26.62174 -24.79226 -24.18641 -22.79155 -22.48553 -20.99233 -20.10914 -19.24724 -18.36294 -17.87775 -16.85165 -16.08675 -15.78934 -15.33007 -15.13672 -14.92327 -14.80849 -14.65907 -13.81432 -13.74892 -13.39510 -13.24697 -13.13589 -13.01229 -12.74148 -12.58613 -12.44407 -12.38547 -12.08204 -11.92539 -11.65862 -11.29807 -11.12570 -11.09802 -11.04520 -10.82535 -10.63452 -10.54239 -10.48810 -10.12373 -10.04892 -9.92750 -9.87736 -9.73124 -9.47880 -8.72974 -8.57839 -8.43228 -8.11560 -7.74777 -6.26341 -3.76854 1.38094 1.45766 3.04391 3.08411 3.17064 3.68739 3.79205 4.12811 4.15736 4.76179 4.81064 4.88279 4.90773 4.98112 5.02475 5.13021 5.23672 5.27177 5.33420 5.50705 5.54658 5.58426 5.60855 5.68775 5.69589 5.72290 5.76321 5.85395 5.93977 5.99052 6.03266 6.07345 6.09616 6.15909 6.24065 6.29346 6.37497 6.46381 6.48032 6.54792 6.56893 6.62311 6.71226 6.88248 6.92008 7.03316 7.10322 7.24899 7.43147 7.59644 7.67987 8.23339 8.67966 9.04326 9.48545 9.95463 10.87103 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.003865 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.077849 B = 7243.425211 C = 7807.495583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.145 4.145 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.151 4.151 7 C 0.099 3.901 8 H 0.050 0.950 9 N -0.497 5.497 10 C 0.032 3.968 11 C 0.457 3.543 12 O -0.540 6.540 13 N -0.599 5.599 14 C -0.298 4.298 15 H 0.120 0.880 16 C 0.040 3.960 17 N -0.885 5.885 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.270 1.270 22 C 0.090 3.910 23 C -0.064 4.064 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.088 4.088 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.014 0.986 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.368 0.632 44 H 0.272 0.728 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.775 1.182 9.926 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.043 4.043 3 C -0.201 4.201 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.189 4.189 7 C -0.009 4.009 8 H 0.068 0.932 9 N -0.219 5.219 10 C -0.099 4.099 11 C 0.243 3.757 12 O -0.421 6.421 13 N -0.239 5.239 14 C -0.427 4.427 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.525 5.525 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.038 4.038 23 C -0.065 4.065 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.107 4.107 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.200 0.800 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.701 2.078 8.941 20.833 hybrid contribution 0.412 -1.809 1.400 2.324 sum -18.290 0.270 10.341 21.012 Atomic orbital electron populations 1.22218 0.96211 1.00477 1.01971 1.20923 0.93030 0.97218 0.93127 1.22204 1.05092 0.92803 1.00034 1.22478 1.01202 0.94680 0.96616 1.22333 0.99614 0.97416 0.96164 1.23137 1.02539 0.96623 0.96566 1.22413 0.93585 0.90602 0.94285 0.93171 1.61739 1.01685 1.42801 1.15721 1.22183 0.90859 0.98427 0.98417 1.19577 0.82547 0.84791 0.88767 1.90429 1.74727 1.38418 1.38492 1.42264 1.14882 1.44140 1.22645 1.19391 0.94921 1.27677 1.00713 0.86274 1.25003 0.95997 0.98070 0.97126 1.69616 1.08903 1.43695 1.30299 0.86725 0.79190 0.81652 0.82106 1.19801 1.20343 1.19577 1.21220 0.95027 0.96013 0.91527 1.19658 0.93630 0.94326 0.98886 1.20914 0.92743 0.99021 0.99943 1.21011 0.98948 0.93382 1.01004 1.21062 0.96399 0.95929 1.00704 1.21114 0.93098 0.99498 1.00505 1.20992 0.99415 0.92462 0.97806 0.91515 0.93472 0.94012 0.87822 0.96723 0.91483 0.93060 0.90277 0.92707 0.91818 0.88383 0.92802 0.89985 0.92309 0.79992 0.91768 0.90006 0.94151 0.86727 0.86586 0.86630 0.86359 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.14 37.16 0.30 -1.69 16 2 C -0.04 -0.65 0.90 -153.39 -0.14 -0.78 16 3 C -0.14 -2.52 7.44 37.16 0.28 -2.25 16 4 C -0.11 -1.84 5.90 -25.08 -0.15 -1.99 16 5 C -0.12 -1.80 6.91 -24.74 -0.17 -1.97 16 6 C -0.15 -2.36 4.71 -25.08 -0.12 -2.48 16 7 C 0.10 1.45 2.34 -66.59 -0.16 1.29 16 8 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 9 N -0.50 -7.39 2.10 -228.18 -0.48 -7.87 16 10 C 0.03 0.52 5.11 -4.97 -0.03 0.49 16 11 C 0.46 9.71 5.31 -10.98 -0.06 9.65 16 12 O -0.54 -13.19 12.85 5.55 0.07 -13.12 16 13 N -0.60 -13.68 5.09 -10.96 -0.06 -13.74 16 14 C -0.30 -8.19 10.16 -14.94 -0.15 -8.34 16 15 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 16 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 17 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 18 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 22 C 0.09 1.08 4.97 -4.98 -0.02 1.06 16 23 C -0.06 -0.77 3.50 -104.62 -0.37 -1.13 16 24 C -0.11 -1.17 6.46 -39.58 -0.26 -1.43 16 25 C -0.13 -1.27 9.28 -39.58 -0.37 -1.64 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 28 C -0.09 -1.08 7.77 -39.59 -0.31 -1.38 16 29 H 0.07 0.82 3.76 -51.93 -0.20 0.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 2.19 4.53 -51.93 -0.24 1.96 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.08 3.08 -51.93 -0.16 0.92 16 35 H 0.05 0.77 7.84 -51.93 -0.41 0.36 16 36 H 0.08 1.57 7.74 -51.93 -0.40 1.16 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.82 3.66 -51.92 -0.19 1.63 16 40 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.08 1.15 7.43 -51.93 -0.39 0.76 16 42 H 0.06 0.85 6.11 -51.93 -0.32 0.53 16 43 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.08 0.92 7.53 -51.93 -0.39 0.52 16 46 H 0.04 0.44 7.60 -51.93 -0.39 0.04 16 47 H 0.11 1.13 7.80 -52.49 -0.41 0.72 16 48 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -30.23 372.91 -9.22 -39.45 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -7.84 Total: 15.06 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.60 Total: -15.01 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.24 Total: -46.54 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.23 -9.22 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426797944.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.723 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds