Wall clock time and date at job start Tue Mar 31 2020 16:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99771 * 2 1 4 4 N 1.46898 * 109.46994 * 125.00112 * 3 2 1 5 5 C 1.46904 * 111.00166 * 287.81996 * 4 3 2 6 6 C 1.50692 * 109.46967 * 158.91198 * 5 4 3 7 7 H 1.08000 * 120.00560 * 4.55244 * 6 5 4 8 8 C 1.37883 * 120.00205 * 184.55184 * 6 5 4 9 9 N 1.31517 * 119.99581 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47107 * 90.00171 * 10 8 6 12 12 H 1.48503 * 109.47357 * 209.99978 * 10 8 6 13 13 H 1.48498 * 109.47471 * 330.00256 * 10 8 6 14 14 C 1.46908 * 110.99889 * 163.86719 * 4 3 2 15 15 C 1.50697 * 109.47256 * 293.95793 * 14 4 3 16 16 O 1.21283 * 119.99787 * 359.97438 * 15 14 4 17 17 N 1.34771 * 120.00116 * 180.02562 * 15 14 4 18 18 C 1.46496 * 120.00412 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.46942 * 325.00116 * 18 17 15 20 20 C 1.53003 * 109.46776 * 84.99721 * 18 17 15 21 21 C 1.50702 * 109.47331 * 204.99833 * 18 17 15 22 22 C 1.38236 * 119.99545 * 140.00350 * 21 18 17 23 23 C 1.38236 * 119.99492 * 180.02562 * 22 21 18 24 24 C 1.38230 * 120.00223 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.00014 * 179.97438 * 24 23 22 26 26 C 1.53005 * 109.47229 * 89.99816 * 25 24 23 27 27 C 1.38236 * 120.00196 * 0.25015 * 24 23 22 28 28 C 1.38232 * 120.00238 * 319.97634 * 21 18 17 29 29 H 1.08003 * 119.99439 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99967 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00489 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47188 * 5.00029 * 3 2 1 33 33 H 1.08995 * 109.46786 * 244.99939 * 3 2 1 34 34 H 1.09000 * 109.46906 * 278.91288 * 5 4 3 35 35 H 1.08997 * 109.46810 * 38.91731 * 5 4 3 36 36 H 0.96994 * 120.00082 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47088 * 173.94872 * 14 4 3 38 38 H 1.09004 * 109.46559 * 53.95774 * 14 4 3 39 39 H 0.97008 * 120.00059 * 359.97438 * 17 15 14 40 40 H 1.08997 * 109.47062 * 60.00469 * 20 18 17 41 41 H 1.09002 * 109.46583 * 180.02562 * 20 18 17 42 42 H 1.09000 * 109.46988 * 299.99935 * 20 18 17 43 43 H 1.08000 * 120.00268 * 359.97205 * 22 21 18 44 44 H 1.08007 * 119.99892 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47191 * 329.99792 * 25 24 23 46 46 H 1.09004 * 109.47063 * 209.99439 * 25 24 23 47 47 H 1.08999 * 109.47326 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47055 * 60.00059 * 26 25 24 49 49 H 1.08998 * 109.47073 * 300.00141 * 26 25 24 50 50 H 1.07999 * 120.00169 * 179.72938 * 27 24 23 51 51 H 1.07998 * 119.99605 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2760 1.4936 2.4046 6 6 3.1431 1.0108 3.5386 7 1 4.1566 0.6917 3.3455 8 6 2.6425 0.9765 4.8229 9 7 1.4081 1.3646 5.0581 10 14 3.7170 0.3775 6.2286 11 1 4.4543 1.5267 6.8125 12 1 2.8644 -0.2456 7.2727 13 1 4.6865 -0.6248 5.7182 14 6 4.0038 2.3873 0.9628 15 6 4.8823 2.0560 -0.2160 16 8 4.6885 1.0406 -0.8503 17 7 5.8839 2.8876 -0.5647 18 6 6.7383 2.5654 -1.7103 19 1 6.8784 1.4859 -1.7668 20 6 6.0750 3.0616 -2.9967 21 6 8.0767 3.2376 -1.5436 22 6 9.2347 2.5678 -1.8920 23 6 10.4624 3.1842 -1.7386 24 6 10.5322 4.4705 -1.2374 25 6 11.8707 5.1423 -1.0696 26 6 12.2271 5.8967 -2.3522 27 6 9.3746 5.1387 -0.8846 28 6 8.1465 4.5242 -1.0429 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 2.0348 2.5460 2.5542 35 1 1.3558 0.9101 2.3771 36 1 1.0560 1.3409 5.9615 37 1 4.6144 2.4566 1.8630 38 1 3.5051 3.3406 0.7878 39 1 6.0391 3.6996 -0.0572 40 1 5.9349 4.1411 -2.9402 41 1 6.7105 2.8214 -3.8491 42 1 5.1069 2.5753 -3.1172 43 1 9.1802 1.5626 -2.2832 44 1 11.3672 2.6607 -2.0104 45 1 12.6324 4.3893 -0.8675 46 1 11.8233 5.8439 -0.2367 47 1 13.1954 6.3822 -2.2310 48 1 11.4654 6.6498 -2.5543 49 1 12.2745 5.1952 -3.1851 50 1 9.4294 6.1421 -0.4890 51 1 7.2417 5.0474 -0.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428858755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:14 Heat of formation + Delta-G solvation = 4.035414 kcal Electronic energy + Delta-G solvation = -27719.866020 eV Core-core repulsion = 24005.302332 eV Total energy + Delta-G solvation = -3714.563688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.24427 -39.20139 -36.82908 -35.70761 -33.72692 -33.07917 -32.23138 -31.29761 -30.96188 -28.77187 -27.69891 -26.78690 -24.69037 -23.83664 -23.11308 -22.40114 -21.06882 -20.33700 -19.89144 -19.05971 -17.33431 -16.57902 -16.30376 -15.86818 -15.54563 -15.22193 -15.01933 -14.63877 -14.24883 -14.21430 -14.04583 -13.92867 -13.71240 -13.63599 -13.46966 -13.07897 -12.92183 -12.68026 -12.57907 -12.20436 -12.10779 -11.84885 -11.65248 -11.49021 -11.37603 -11.19715 -11.09011 -11.01893 -10.90772 -10.67957 -10.61820 -10.39502 -9.95999 -9.39829 -9.20318 -9.14289 -8.98185 -8.74424 -8.60279 -8.38763 -7.25269 -6.00000 -4.01318 1.06484 1.18258 2.92961 3.05927 3.28809 3.32821 3.39579 3.45129 3.57076 4.36044 4.45200 4.51394 4.56119 4.77236 4.82113 5.00431 5.03676 5.12843 5.16789 5.19181 5.23086 5.32595 5.33122 5.35832 5.53584 5.57517 5.61337 5.63562 5.75230 5.76505 5.81841 5.86075 5.89009 5.91317 6.06580 6.11639 6.16688 6.19299 6.29994 6.34853 6.37581 6.56764 6.67285 6.76381 7.17886 7.27108 7.27838 7.42693 7.67533 7.84912 8.12074 8.19681 8.53469 8.62413 9.06224 9.62623 11.10312 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002667 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.733481 B =10496.418761 C =12324.866603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C 0.078 3.922 4 N -0.515 5.515 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.046 3.954 15 C 0.516 3.484 16 O -0.521 6.521 17 N -0.735 5.735 18 C 0.184 3.816 19 H 0.095 0.905 20 C -0.156 4.156 21 C -0.090 4.090 22 C -0.105 4.105 23 C -0.115 4.115 24 C -0.085 4.085 25 C -0.086 4.086 26 C -0.146 4.146 27 C -0.114 4.114 28 C -0.110 4.110 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.021 0.979 33 H 0.081 0.919 34 H -0.010 1.010 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.397 0.603 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.122 0.878 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.822 9.618 -16.115 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.129 4.129 3 C -0.050 4.050 4 N -0.239 5.239 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.086 4.086 15 C 0.303 3.697 16 O -0.395 6.395 17 N -0.390 5.390 18 C 0.079 3.921 19 H 0.113 0.887 20 C -0.214 4.214 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.085 4.085 25 C -0.123 4.123 26 C -0.204 4.204 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.007 0.993 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.140 0.860 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.766 8.422 -16.404 24.922 hybrid contribution 0.131 0.861 1.209 1.490 sum 16.897 9.283 -15.194 24.547 Atomic orbital electron populations 1.23644 0.95959 1.00977 1.04561 1.22809 0.95086 0.98893 0.96100 1.21285 0.94056 0.94012 0.95637 1.61808 1.14688 1.44109 1.03315 1.19828 0.94358 0.95265 0.83768 1.21164 0.99441 1.42644 0.91103 0.91966 1.24978 0.95092 0.95647 0.98852 1.69957 1.14656 1.48181 1.20990 0.86527 0.80302 0.78967 0.81813 1.20797 1.21283 1.19768 1.21886 0.95689 0.94326 0.96697 1.21101 0.80393 0.82829 0.85376 1.90641 1.69710 1.25399 1.53776 1.46244 1.33537 1.26629 1.32638 1.19692 0.86011 1.00109 0.86266 0.88717 1.22152 1.01468 1.01402 0.96405 1.19968 0.94670 0.94727 0.99731 1.21006 0.91736 0.99832 0.99762 1.20996 0.97582 0.94710 1.00016 1.19910 0.95222 0.94525 0.98853 1.20551 0.93713 0.99417 0.98642 1.21747 1.01238 1.00230 0.97155 1.20995 0.91909 0.99860 1.00449 1.20920 0.97809 0.94568 0.99497 0.89039 0.89340 0.87276 0.96040 0.90124 0.99272 0.94001 0.92968 0.87137 0.93324 0.76802 0.92464 0.91806 0.91538 0.85789 0.86077 0.91049 0.91005 0.92437 0.92543 0.92573 0.86043 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.76 14.32 29.01 0.42 -3.34 16 2 C -0.11 -2.16 8.76 -36.02 -0.32 -2.47 16 3 C 0.08 1.55 4.96 -4.97 -0.02 1.52 16 4 N -0.51 -11.45 4.10 -238.96 -0.98 -12.43 16 5 C 0.19 5.01 4.59 -4.98 -0.02 4.99 16 6 C -0.50 -14.20 8.65 -34.44 -0.30 -14.50 16 7 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.05 0.84 5.26 -4.97 -0.03 0.82 16 15 C 0.52 8.72 7.35 -10.99 -0.08 8.64 16 16 O -0.52 -10.42 14.14 5.55 0.08 -10.34 16 17 N -0.74 -9.40 5.03 -54.93 -0.28 -9.68 16 18 C 0.18 2.14 2.78 -69.08 -0.19 1.94 16 19 H 0.09 1.27 7.44 -51.93 -0.39 0.88 16 20 C -0.16 -1.63 9.46 37.16 0.35 -1.28 16 21 C -0.09 -0.93 4.95 -104.62 -0.52 -1.45 16 22 C -0.10 -1.02 9.67 -39.58 -0.38 -1.40 16 23 C -0.12 -1.01 9.70 -39.59 -0.38 -1.40 16 24 C -0.09 -0.72 5.13 -104.63 -0.54 -1.26 16 25 C -0.09 -0.56 6.07 -27.88 -0.17 -0.73 16 26 C -0.15 -0.84 9.90 37.16 0.37 -0.47 16 27 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 28 C -0.11 -1.02 9.06 -39.59 -0.36 -1.38 16 29 H 0.09 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.09 1.49 7.84 -52.49 -0.41 1.08 16 31 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.02 0.42 7.70 -51.93 -0.40 0.02 16 33 H 0.08 1.56 5.81 -51.93 -0.30 1.26 16 34 H -0.01 -0.28 7.98 -51.93 -0.41 -0.70 16 35 H 0.04 1.19 7.12 -51.93 -0.37 0.82 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.11 2.11 7.44 -51.93 -0.39 1.72 16 38 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.40 4.20 6.87 -40.82 -0.28 3.92 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 46 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.12 0.97 6.92 -52.49 -0.36 0.61 16 LS Contribution 417.77 15.07 6.30 6.30 Total: -1.00 -32.46 417.77 -10.59 -43.05 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.77 Total: 3.97 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.66 Total: -11.67 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.52 Total: -48.03 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.46 -10.59 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428858755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.081 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds