Wall clock time and date at job start Tue Mar 31 2020 16:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99771 * 2 1 4 4 N 1.46898 * 109.46994 * 125.00112 * 3 2 1 5 5 C 1.46904 * 111.00166 * 287.81996 * 4 3 2 6 6 C 1.50692 * 109.46967 * 158.91198 * 5 4 3 7 7 H 1.08000 * 120.00560 * 4.55244 * 6 5 4 8 8 C 1.37883 * 120.00205 * 184.55184 * 6 5 4 9 9 N 1.31517 * 119.99581 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47107 * 90.00171 * 10 8 6 12 12 H 1.48503 * 109.47357 * 209.99978 * 10 8 6 13 13 H 1.48498 * 109.47471 * 330.00256 * 10 8 6 14 14 C 1.46908 * 110.99889 * 163.86719 * 4 3 2 15 15 C 1.50697 * 109.47256 * 293.95793 * 14 4 3 16 16 O 1.21283 * 119.99787 * 359.97438 * 15 14 4 17 17 N 1.34771 * 120.00116 * 180.02562 * 15 14 4 18 18 C 1.46496 * 120.00412 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.46942 * 325.00116 * 18 17 15 20 20 C 1.53003 * 109.46776 * 84.99721 * 18 17 15 21 21 C 1.50702 * 109.47331 * 204.99833 * 18 17 15 22 22 C 1.38236 * 119.99545 * 140.00350 * 21 18 17 23 23 C 1.38236 * 119.99492 * 180.02562 * 22 21 18 24 24 C 1.38230 * 120.00223 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.00014 * 179.97438 * 24 23 22 26 26 C 1.53005 * 109.47229 * 89.99816 * 25 24 23 27 27 C 1.38236 * 120.00196 * 0.25015 * 24 23 22 28 28 C 1.38232 * 120.00238 * 319.97634 * 21 18 17 29 29 H 1.08003 * 119.99439 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99967 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00489 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47188 * 5.00029 * 3 2 1 33 33 H 1.08995 * 109.46786 * 244.99939 * 3 2 1 34 34 H 1.09000 * 109.46906 * 278.91288 * 5 4 3 35 35 H 1.08997 * 109.46810 * 38.91731 * 5 4 3 36 36 H 0.96994 * 120.00082 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47088 * 173.94872 * 14 4 3 38 38 H 1.09004 * 109.46559 * 53.95774 * 14 4 3 39 39 H 0.97008 * 120.00059 * 359.97438 * 17 15 14 40 40 H 1.08997 * 109.47062 * 60.00469 * 20 18 17 41 41 H 1.09002 * 109.46583 * 180.02562 * 20 18 17 42 42 H 1.09000 * 109.46988 * 299.99935 * 20 18 17 43 43 H 1.08000 * 120.00268 * 359.97205 * 22 21 18 44 44 H 1.08007 * 119.99892 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47191 * 329.99792 * 25 24 23 46 46 H 1.09004 * 109.47063 * 209.99439 * 25 24 23 47 47 H 1.08999 * 109.47326 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47055 * 60.00059 * 26 25 24 49 49 H 1.08998 * 109.47073 * 300.00141 * 26 25 24 50 50 H 1.07999 * 120.00169 * 179.72938 * 27 24 23 51 51 H 1.07998 * 119.99605 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2760 1.4936 2.4046 6 6 3.1431 1.0108 3.5386 7 1 4.1566 0.6917 3.3455 8 6 2.6425 0.9765 4.8229 9 7 1.4081 1.3646 5.0581 10 14 3.7170 0.3775 6.2286 11 1 4.4543 1.5267 6.8125 12 1 2.8644 -0.2456 7.2727 13 1 4.6865 -0.6248 5.7182 14 6 4.0038 2.3873 0.9628 15 6 4.8823 2.0560 -0.2160 16 8 4.6885 1.0406 -0.8503 17 7 5.8839 2.8876 -0.5647 18 6 6.7383 2.5654 -1.7103 19 1 6.8784 1.4859 -1.7668 20 6 6.0750 3.0616 -2.9967 21 6 8.0767 3.2376 -1.5436 22 6 9.2347 2.5678 -1.8920 23 6 10.4624 3.1842 -1.7386 24 6 10.5322 4.4705 -1.2374 25 6 11.8707 5.1423 -1.0696 26 6 12.2271 5.8967 -2.3522 27 6 9.3746 5.1387 -0.8846 28 6 8.1465 4.5242 -1.0429 29 1 -0.5399 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 2.0348 2.5460 2.5542 35 1 1.3558 0.9101 2.3771 36 1 1.0560 1.3409 5.9615 37 1 4.6144 2.4566 1.8630 38 1 3.5051 3.3406 0.7878 39 1 6.0391 3.6996 -0.0572 40 1 5.9349 4.1411 -2.9402 41 1 6.7105 2.8214 -3.8491 42 1 5.1069 2.5753 -3.1172 43 1 9.1802 1.5626 -2.2832 44 1 11.3672 2.6607 -2.0104 45 1 12.6324 4.3893 -0.8675 46 1 11.8233 5.8439 -0.2367 47 1 13.1954 6.3822 -2.2310 48 1 11.4654 6.6498 -2.5543 49 1 12.2745 5.1952 -3.1851 50 1 9.4294 6.1421 -0.4890 51 1 7.2417 5.0474 -0.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428858755.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:11 Heat of formation + Delta-G solvation = -14.165900 kcal Electronic energy + Delta-G solvation = -27720.655288 eV Core-core repulsion = 24005.302332 eV Total energy + Delta-G solvation = -3715.352957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.26481 -40.26785 -38.32029 -36.81297 -34.97142 -34.52225 -34.00299 -32.18706 -31.78776 -29.70524 -29.37077 -28.32333 -25.81356 -25.28413 -23.84140 -23.43769 -22.43689 -21.35262 -21.06749 -20.61415 -18.51886 -18.47429 -17.64297 -16.88629 -16.62086 -16.48040 -16.23972 -15.96731 -15.70864 -15.45804 -15.26811 -14.79868 -14.67531 -14.57403 -14.41307 -14.21626 -14.10648 -14.06021 -13.74604 -13.37221 -13.32303 -13.02349 -12.93162 -12.75430 -12.55610 -12.49951 -12.43294 -12.30056 -12.07974 -12.05020 -11.84525 -11.67311 -11.61512 -11.34813 -10.78235 -10.58262 -10.17125 -10.08311 -9.82723 -9.46328 -9.01412 -8.16940 -6.26610 0.35120 0.49469 1.40882 1.43039 1.44230 1.54852 1.69243 2.13214 2.42483 2.82959 3.14583 3.41713 3.57526 3.87779 3.91814 3.95238 4.11580 4.12472 4.19827 4.26635 4.32456 4.39124 4.43378 4.52537 4.55405 4.57805 4.63879 4.65713 4.72061 4.73451 4.76390 4.92930 5.05525 5.05989 5.09218 5.11781 5.16633 5.19793 5.23563 5.27718 5.39782 5.42897 5.50830 5.65737 5.71229 5.73460 5.75940 5.88151 6.09059 6.11326 6.27432 6.56392 6.63819 6.87744 7.31501 7.42388 8.93050 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002667 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.733481 B =10496.418761 C =12324.866603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.085 3.915 4 N -0.531 5.531 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.044 3.956 15 C 0.523 3.477 16 O -0.556 6.556 17 N -0.717 5.717 18 C 0.187 3.813 19 H 0.074 0.926 20 C -0.149 4.149 21 C -0.103 4.103 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.085 4.085 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.025 0.975 33 H 0.085 0.915 34 H -0.028 1.028 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.139 0.861 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.532 10.698 -16.152 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.160 4.160 3 C -0.043 4.043 4 N -0.255 5.255 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.196 1.196 14 C -0.087 4.087 15 C 0.309 3.691 16 O -0.433 6.433 17 N -0.371 5.371 18 C 0.083 3.917 19 H 0.092 0.908 20 C -0.207 4.207 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.201 4.201 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.043 0.957 33 H 0.103 0.897 34 H -0.011 1.011 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.157 0.843 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.512 9.546 -16.460 26.547 hybrid contribution -0.374 0.567 1.163 1.347 sum 18.138 10.112 -15.297 25.793 Atomic orbital electron populations 1.23881 0.95334 1.02355 1.01571 1.22814 0.95938 0.98368 0.98891 1.21248 0.93804 0.94410 0.94810 1.61678 1.15309 1.45948 1.02564 1.19425 0.93337 0.93304 0.85389 1.21416 0.99453 1.42778 0.92177 0.92524 1.25822 0.96371 0.95608 1.01458 1.70072 1.16261 1.49046 1.21756 0.85461 0.78506 0.78716 0.78401 1.19378 1.20852 1.19582 1.21897 0.95219 0.94301 0.97322 1.20717 0.80907 0.82780 0.84669 1.90631 1.70876 1.26973 1.54858 1.46061 1.32137 1.26151 1.32752 1.19703 0.86753 0.99226 0.86055 0.90767 1.22082 1.00525 1.01866 0.96244 1.19850 0.93837 0.95338 1.01331 1.21170 0.92057 1.00240 1.00025 1.21230 0.97810 0.95072 0.99860 1.20224 0.96200 0.94452 0.97904 1.20599 0.92736 0.99683 0.99251 1.21729 1.01778 1.00033 0.96609 1.21259 0.91692 1.00682 1.00260 1.21091 0.98741 0.94247 0.99283 0.87028 0.88496 0.88310 0.95713 0.89666 1.01082 0.96807 0.92716 0.87916 0.91278 0.75284 0.91217 0.90406 0.93482 0.85386 0.84509 0.90422 0.90332 0.91280 0.92820 0.92878 0.84334 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.71 14.32 67.78 0.97 -5.74 16 2 C -0.14 -5.62 8.76 25.65 0.22 -5.39 16 3 C 0.08 3.42 4.96 85.56 0.42 3.85 16 4 N -0.53 -24.10 4.10 -909.94 -3.73 -27.83 16 5 C 0.21 11.29 4.59 85.55 0.39 11.68 16 6 C -0.52 -29.66 8.65 25.60 0.22 -29.44 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 10 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.04 1.63 5.26 85.55 0.45 2.08 16 15 C 0.52 17.73 7.35 87.66 0.64 18.37 16 16 O -0.56 -22.68 14.14 -3.04 -0.04 -22.72 16 17 N -0.72 -17.92 5.03 -446.11 -2.24 -20.16 16 18 C 0.19 4.26 2.78 44.25 0.12 4.39 16 19 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 20 C -0.15 -3.01 9.46 71.98 0.68 -2.33 16 21 C -0.10 -2.01 4.95 -19.87 -0.10 -2.11 16 22 C -0.12 -2.16 9.67 22.27 0.22 -1.94 16 23 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 24 C -0.09 -1.33 5.13 -19.87 -0.10 -1.43 16 25 C -0.09 -0.92 6.07 29.85 0.18 -0.74 16 26 C -0.14 -1.36 9.90 71.98 0.71 -0.64 16 27 C -0.12 -1.86 9.70 22.27 0.22 -1.65 16 28 C -0.12 -1.96 9.06 22.27 0.20 -1.76 16 29 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.10 3.18 7.84 -2.91 -0.02 3.15 16 31 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.02 0.97 7.70 -2.39 -0.02 0.95 16 33 H 0.09 3.35 5.81 -2.39 -0.01 3.34 16 34 H -0.03 -1.59 7.98 -2.39 -0.02 -1.61 16 35 H 0.01 0.81 7.12 -2.39 -0.02 0.79 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.10 3.96 7.44 -2.39 -0.02 3.95 16 38 H 0.07 2.28 8.12 -2.38 -0.02 2.26 16 39 H 0.41 8.16 6.87 -92.70 -0.64 7.52 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.13 2.15 8.04 -2.91 -0.02 2.13 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 46 H 0.08 0.75 8.08 -2.38 -0.02 0.73 16 47 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 49 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 51 H 0.13 1.85 6.92 -2.91 -0.02 1.83 16 Total: -1.00 -69.97 417.77 2.69 -67.28 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.25 Total: 26.03 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 6.14 Total: -13.76 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -5.68 Total: -103.43 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.04 Total: -22.72 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -69.97 2.69 -67.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428858755.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.113 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds