Wall clock time and date at job start Tue Mar 31 2020 16:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00285 * 2 1 4 4 N 1.46898 * 109.47084 * 124.10756 * 3 2 1 5 5 C 1.46901 * 111.00018 * 298.60756 * 4 3 2 6 6 C 1.50706 * 109.47274 * 287.97329 * 5 4 3 7 7 H 1.08003 * 119.99640 * 354.68460 * 6 5 4 8 8 C 1.37878 * 120.00199 * 174.68565 * 6 5 4 9 9 N 1.31506 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47087 * 119.99713 * 10 8 6 13 13 H 1.48495 * 109.47393 * 239.99818 * 10 8 6 14 14 C 1.46896 * 111.00203 * 62.56188 * 4 3 2 15 15 C 1.50693 * 109.47143 * 66.04742 * 14 4 3 16 16 O 1.21277 * 120.00113 * 359.97438 * 15 14 4 17 17 N 1.34776 * 119.99993 * 180.02562 * 15 14 4 18 18 C 1.46509 * 119.99944 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.46810 * 35.00074 * 18 17 15 20 20 C 1.52996 * 109.46990 * 274.99901 * 18 17 15 21 21 C 1.50697 * 109.47135 * 154.99624 * 18 17 15 22 22 C 1.38230 * 120.00214 * 219.99981 * 21 18 17 23 23 C 1.38242 * 120.00226 * 180.02562 * 22 21 18 24 24 C 1.38234 * 119.99899 * 0.02562 * 23 22 21 25 25 C 1.50699 * 120.00174 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.47123 * 89.99727 * 25 24 23 27 27 C 1.38239 * 119.99768 * 0.25046 * 24 23 22 28 28 C 1.38230 * 120.00217 * 359.48950 * 27 24 23 29 29 H 1.07997 * 120.00411 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99753 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.00031 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46768 * 4.10869 * 3 2 1 33 33 H 1.08994 * 109.47254 * 244.10557 * 3 2 1 34 34 H 1.08996 * 109.47229 * 47.96798 * 5 4 3 35 35 H 1.09003 * 109.47399 * 167.97323 * 5 4 3 36 36 H 0.97005 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46958 * 306.04311 * 14 4 3 38 38 H 1.08997 * 109.47209 * 186.04629 * 14 4 3 39 39 H 0.96998 * 120.00527 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47333 * 59.99893 * 20 18 17 41 41 H 1.09002 * 109.46891 * 180.02562 * 20 18 17 42 42 H 1.09005 * 109.47101 * 299.99402 * 20 18 17 43 43 H 1.07999 * 120.00085 * 0.02562 * 22 21 18 44 44 H 1.07999 * 119.99731 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.46816 * 329.99936 * 25 24 23 46 46 H 1.08991 * 109.47061 * 209.99729 * 25 24 23 47 47 H 1.09003 * 109.46905 * 300.00325 * 26 25 24 48 48 H 1.08998 * 109.46730 * 60.00002 * 26 25 24 49 49 H 1.08993 * 109.47047 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99940 * 179.73403 * 27 24 23 51 51 H 1.08001 * 119.99998 * 180.22902 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2431 1.2546 2.4141 6 6 1.5163 2.5514 2.6615 7 1 1.6623 3.3880 1.9943 8 6 0.6649 2.6697 3.7396 9 7 0.4868 1.6508 4.5517 10 14 -0.2354 4.2773 4.0466 11 1 0.1351 5.2605 2.9971 12 1 -1.7007 4.0394 4.0074 13 1 0.1440 4.8105 5.3796 14 6 3.9868 0.2746 1.0496 15 6 4.8823 0.5352 -0.1340 16 8 4.7002 1.5125 -0.8287 17 7 5.8849 -0.3184 -0.4213 18 6 6.7552 -0.0654 -1.5725 19 1 6.9003 1.0086 -1.6890 20 6 6.1064 -0.6326 -2.8367 21 6 8.0887 -0.7312 -1.3501 22 6 9.2536 -0.0864 -1.7212 23 6 10.4769 -0.6974 -1.5176 24 6 10.5350 -1.9535 -0.9434 25 6 11.8684 -2.6198 -0.7220 26 6 12.4033 -2.2433 0.6612 27 6 9.3696 -2.6007 -0.5775 28 6 8.1468 -1.9875 -0.7761 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3575 2.1322 0.0736 33 1 2.6339 1.3953 -0.9244 34 1 1.5223 0.4388 2.3601 35 1 2.9421 1.0685 3.2296 36 1 -0.1125 1.7340 5.3099 37 1 3.4872 -0.6858 0.9229 38 1 4.5851 0.2555 1.9605 39 1 6.0304 -1.1003 0.1339 40 1 5.1419 -0.1510 -2.9975 41 1 6.7541 -0.4447 -3.6930 42 1 5.9614 -1.7066 -2.7201 43 1 9.2083 0.8948 -2.1702 44 1 11.3870 -0.1937 -1.8080 45 1 12.5715 -2.2883 -1.4861 46 1 11.7486 -3.7014 -0.7832 47 1 12.5230 -1.1616 0.7223 48 1 11.7001 -2.5748 1.4252 49 1 13.3675 -2.7257 0.8214 50 1 9.4147 -3.5839 -0.1328 51 1 7.2365 -2.4917 -0.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428858756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:18 Heat of formation + Delta-G solvation = 6.052920 kcal Electronic energy + Delta-G solvation = -27773.429520 eV Core-core repulsion = 24058.953317 eV Total energy + Delta-G solvation = -3714.476203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.28627 -39.26596 -37.00627 -35.77866 -33.75495 -32.77943 -32.12445 -31.32338 -30.99445 -28.80783 -27.91369 -26.45581 -24.75306 -24.01318 -23.14579 -22.35354 -21.03295 -20.57665 -20.07540 -18.94232 -17.23560 -16.56570 -16.15506 -15.79230 -15.59069 -15.48020 -14.97399 -14.66252 -14.28566 -14.18974 -14.09421 -13.99906 -13.77893 -13.53594 -13.37764 -13.28776 -13.23446 -12.57588 -12.37971 -12.14254 -12.10848 -11.91420 -11.67376 -11.48213 -11.29351 -11.13804 -11.12001 -10.93879 -10.90504 -10.65787 -10.52561 -10.45246 -9.94658 -9.60308 -9.18394 -9.06857 -9.02151 -8.76859 -8.58731 -8.37626 -7.18608 -5.97674 -3.97506 1.02742 1.14421 2.90277 3.03847 3.23440 3.34618 3.42079 3.48464 3.53263 4.32910 4.47946 4.48357 4.53595 4.73685 4.79806 4.99611 5.07193 5.12709 5.14167 5.16941 5.20331 5.30089 5.30719 5.38180 5.52208 5.55845 5.56278 5.59418 5.64919 5.73314 5.74239 5.85378 5.85842 5.87738 5.95316 6.06123 6.15811 6.28136 6.32626 6.34048 6.47454 6.62539 6.72652 6.85807 7.18836 7.24616 7.36691 7.46857 7.63259 7.88396 8.10959 8.22858 8.53941 8.61534 9.11344 9.66166 11.13019 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002262 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.408082 B =12376.183389 C =13067.312928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.184 4.184 3 C 0.085 3.915 4 N -0.511 5.511 5 C 0.190 3.810 6 C -0.498 4.498 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.033 3.967 15 C 0.518 3.482 16 O -0.517 6.517 17 N -0.736 5.736 18 C 0.184 3.816 19 H 0.095 0.905 20 C -0.156 4.156 21 C -0.091 4.091 22 C -0.105 4.105 23 C -0.115 4.115 24 C -0.085 4.085 25 C -0.085 4.085 26 C -0.148 4.148 27 C -0.114 4.114 28 C -0.110 4.110 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.022 0.978 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.121 0.879 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.203 -11.983 -12.808 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.204 4.204 3 C -0.043 4.043 4 N -0.234 5.234 5 C 0.065 3.935 6 C -0.537 4.537 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.099 4.099 15 C 0.304 3.696 16 O -0.391 6.391 17 N -0.391 5.391 18 C 0.079 3.921 19 H 0.113 0.887 20 C -0.215 4.215 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.205 4.205 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.139 0.861 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.212 -10.812 -13.140 26.421 hybrid contribution -0.913 -0.548 0.740 1.297 sum 19.299 -11.360 -12.400 25.598 Atomic orbital electron populations 1.23693 0.96014 1.01108 1.00829 1.23617 0.96813 0.99868 1.00054 1.21405 0.94564 0.93823 0.94492 1.62158 1.14943 1.41732 1.04574 1.19831 0.92142 0.97548 0.83969 1.21165 1.24037 0.98112 1.10394 0.91790 1.24956 0.96893 0.96619 0.96135 1.69964 1.37887 1.30301 1.15845 0.86479 0.79266 0.83833 0.78110 1.19612 1.21190 1.21114 1.21972 0.95661 0.95976 0.96259 1.20992 0.80391 0.82072 0.86106 1.90637 1.69902 1.27822 1.50772 1.46242 1.33055 1.28711 1.31092 1.19697 0.85820 1.00333 0.86202 0.88694 1.22155 1.01593 1.01161 0.96572 1.19973 0.94666 0.95019 0.99455 1.21011 0.91708 0.99832 0.99771 1.21001 0.97629 0.94913 0.99740 1.19918 0.95152 0.94915 0.98515 1.20547 0.93437 1.00120 0.98136 1.21755 1.00743 1.01836 0.96167 1.20992 0.91883 0.99965 1.00392 1.20919 0.97854 0.94741 0.99335 0.89783 0.88400 0.89014 0.89836 0.90135 0.97471 0.95956 0.93131 0.92778 0.88611 0.76915 0.91438 0.91785 0.92480 0.85762 0.86058 0.91104 0.91082 0.92478 0.92444 0.92417 0.86058 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 14.32 29.02 0.42 -2.83 16 2 C -0.18 -3.45 7.46 -36.02 -0.27 -3.72 16 3 C 0.08 1.77 5.32 -4.98 -0.03 1.74 16 4 N -0.51 -11.33 4.39 -238.97 -1.05 -12.38 16 5 C 0.19 4.91 4.60 -4.97 -0.02 4.88 16 6 C -0.50 -14.16 8.51 -34.44 -0.29 -14.46 16 7 H 0.06 1.85 7.68 -52.48 -0.40 1.45 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.03 0.58 5.27 -4.98 -0.03 0.55 16 15 C 0.52 8.46 7.50 -10.99 -0.08 8.38 16 16 O -0.52 -10.26 13.98 5.56 0.08 -10.19 16 17 N -0.74 -8.95 5.03 -54.93 -0.28 -9.23 16 18 C 0.18 2.06 2.78 -69.08 -0.19 1.87 16 19 H 0.10 1.23 7.44 -51.93 -0.39 0.84 16 20 C -0.16 -1.62 9.46 37.16 0.35 -1.27 16 21 C -0.09 -0.88 4.95 -104.62 -0.52 -1.40 16 22 C -0.10 -0.96 9.67 -39.58 -0.38 -1.35 16 23 C -0.11 -0.95 9.70 -39.58 -0.38 -1.34 16 24 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 25 C -0.09 -0.51 6.07 -27.88 -0.17 -0.68 16 26 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 27 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 28 C -0.11 -0.97 9.05 -39.58 -0.36 -1.33 16 29 H 0.08 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.10 1.84 7.84 -52.48 -0.41 1.43 16 31 H 0.09 1.57 6.75 -52.48 -0.35 1.22 16 32 H 0.08 1.89 7.02 -51.93 -0.36 1.53 16 33 H 0.08 1.65 5.84 -51.93 -0.30 1.35 16 34 H 0.01 0.20 6.77 -51.93 -0.35 -0.15 16 35 H 0.02 0.61 7.81 -51.93 -0.41 0.20 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 0.87 6.26 -51.93 -0.33 0.54 16 38 H 0.10 1.60 7.86 -51.93 -0.41 1.19 16 39 H 0.40 3.88 6.87 -40.82 -0.28 3.60 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.12 1.01 8.04 -52.49 -0.42 0.59 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.90 6.92 -52.49 -0.36 0.54 16 LS Contribution 412.98 15.07 6.22 6.22 Total: -1.00 -32.63 412.98 -10.48 -43.11 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.56 Total: 3.95 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.61 Total: -12.51 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.59 Total: -47.57 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.63 -10.48 -43.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428858756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds