Wall clock time and date at job start Tue Mar 31 2020 16:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00285 * 2 1 4 4 N 1.46898 * 109.47084 * 124.10756 * 3 2 1 5 5 C 1.46901 * 111.00018 * 298.60756 * 4 3 2 6 6 C 1.50706 * 109.47274 * 287.97329 * 5 4 3 7 7 H 1.08003 * 119.99640 * 354.68460 * 6 5 4 8 8 C 1.37878 * 120.00199 * 174.68565 * 6 5 4 9 9 N 1.31506 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47087 * 119.99713 * 10 8 6 13 13 H 1.48495 * 109.47393 * 239.99818 * 10 8 6 14 14 C 1.46896 * 111.00203 * 62.56188 * 4 3 2 15 15 C 1.50693 * 109.47143 * 66.04742 * 14 4 3 16 16 O 1.21277 * 120.00113 * 359.97438 * 15 14 4 17 17 N 1.34776 * 119.99993 * 180.02562 * 15 14 4 18 18 C 1.46509 * 119.99944 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.46810 * 35.00074 * 18 17 15 20 20 C 1.52996 * 109.46990 * 274.99901 * 18 17 15 21 21 C 1.50697 * 109.47135 * 154.99624 * 18 17 15 22 22 C 1.38230 * 120.00214 * 219.99981 * 21 18 17 23 23 C 1.38242 * 120.00226 * 180.02562 * 22 21 18 24 24 C 1.38234 * 119.99899 * 0.02562 * 23 22 21 25 25 C 1.50699 * 120.00174 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.47123 * 89.99727 * 25 24 23 27 27 C 1.38239 * 119.99768 * 0.25046 * 24 23 22 28 28 C 1.38230 * 120.00217 * 359.48950 * 27 24 23 29 29 H 1.07997 * 120.00411 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.99753 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.00031 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46768 * 4.10869 * 3 2 1 33 33 H 1.08994 * 109.47254 * 244.10557 * 3 2 1 34 34 H 1.08996 * 109.47229 * 47.96798 * 5 4 3 35 35 H 1.09003 * 109.47399 * 167.97323 * 5 4 3 36 36 H 0.97005 * 120.00008 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46958 * 306.04311 * 14 4 3 38 38 H 1.08997 * 109.47209 * 186.04629 * 14 4 3 39 39 H 0.96998 * 120.00527 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.47333 * 59.99893 * 20 18 17 41 41 H 1.09002 * 109.46891 * 180.02562 * 20 18 17 42 42 H 1.09005 * 109.47101 * 299.99402 * 20 18 17 43 43 H 1.07999 * 120.00085 * 0.02562 * 22 21 18 44 44 H 1.07999 * 119.99731 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.46816 * 329.99936 * 25 24 23 46 46 H 1.08991 * 109.47061 * 209.99729 * 25 24 23 47 47 H 1.09003 * 109.46905 * 300.00325 * 26 25 24 48 48 H 1.08998 * 109.46730 * 60.00002 * 26 25 24 49 49 H 1.08993 * 109.47047 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99940 * 179.73403 * 27 24 23 51 51 H 1.08001 * 119.99998 * 180.22902 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3408 1.1467 5 6 2.2431 1.2546 2.4141 6 6 1.5163 2.5514 2.6615 7 1 1.6623 3.3880 1.9943 8 6 0.6649 2.6697 3.7396 9 7 0.4868 1.6508 4.5517 10 14 -0.2354 4.2773 4.0466 11 1 0.1351 5.2605 2.9971 12 1 -1.7007 4.0394 4.0074 13 1 0.1440 4.8105 5.3796 14 6 3.9868 0.2746 1.0496 15 6 4.8823 0.5352 -0.1340 16 8 4.7002 1.5125 -0.8287 17 7 5.8849 -0.3184 -0.4213 18 6 6.7552 -0.0654 -1.5725 19 1 6.9003 1.0086 -1.6890 20 6 6.1064 -0.6326 -2.8367 21 6 8.0887 -0.7312 -1.3501 22 6 9.2536 -0.0864 -1.7212 23 6 10.4769 -0.6974 -1.5176 24 6 10.5350 -1.9535 -0.9434 25 6 11.8684 -2.6198 -0.7220 26 6 12.4033 -2.2433 0.6612 27 6 9.3696 -2.6007 -0.5775 28 6 8.1468 -1.9875 -0.7761 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3575 2.1322 0.0736 33 1 2.6339 1.3953 -0.9244 34 1 1.5223 0.4388 2.3601 35 1 2.9421 1.0685 3.2296 36 1 -0.1125 1.7340 5.3099 37 1 3.4872 -0.6858 0.9229 38 1 4.5851 0.2555 1.9605 39 1 6.0304 -1.1003 0.1339 40 1 5.1419 -0.1510 -2.9975 41 1 6.7541 -0.4447 -3.6930 42 1 5.9614 -1.7066 -2.7201 43 1 9.2083 0.8948 -2.1702 44 1 11.3870 -0.1937 -1.8080 45 1 12.5715 -2.2883 -1.4861 46 1 11.7486 -3.7014 -0.7832 47 1 12.5230 -1.1616 0.7223 48 1 11.7001 -2.5748 1.4252 49 1 13.3675 -2.7257 0.8214 50 1 9.4147 -3.5839 -0.1328 51 1 7.2365 -2.4917 -0.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428858756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:16 Heat of formation + Delta-G solvation = -12.761278 kcal Electronic energy + Delta-G solvation = -27774.245365 eV Core-core repulsion = 24058.953317 eV Total energy + Delta-G solvation = -3715.292048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28000 -40.29473 -38.49669 -36.82856 -34.82198 -34.52560 -33.73452 -32.20151 -31.78941 -29.83866 -29.36264 -28.08321 -26.06147 -25.25149 -23.82342 -23.33729 -22.56286 -21.59938 -21.07888 -20.45210 -18.53110 -18.08001 -17.64667 -17.03419 -16.62545 -16.47395 -16.25825 -15.86114 -15.82198 -15.55456 -15.30633 -14.89904 -14.73249 -14.45577 -14.28784 -14.17617 -14.06431 -14.02949 -13.92129 -13.43468 -13.15964 -12.85169 -12.77845 -12.73386 -12.56325 -12.55383 -12.30574 -12.22159 -12.15237 -12.05072 -12.02234 -11.67171 -11.61193 -11.44617 -10.74684 -10.56774 -10.17891 -10.07901 -9.82159 -9.45773 -8.92588 -8.16442 -6.24123 0.35521 0.50028 1.39507 1.40957 1.42860 1.54332 1.70962 2.12250 2.43285 2.83383 3.15923 3.46642 3.58070 3.88504 3.92606 3.96099 4.06045 4.12321 4.17889 4.21503 4.32768 4.40091 4.43984 4.49190 4.52770 4.58055 4.64876 4.66357 4.72129 4.74979 4.93598 4.98456 5.05681 5.09458 5.11638 5.13322 5.20433 5.22369 5.24316 5.35760 5.40067 5.43802 5.51377 5.68081 5.69592 5.72279 5.74134 5.90415 6.09372 6.10478 6.37079 6.47772 6.70809 6.90884 7.33478 7.44306 8.93533 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002262 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.408082 B =12376.183389 C =13067.312928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.192 4.192 3 C 0.093 3.907 4 N -0.529 5.529 5 C 0.208 3.792 6 C -0.516 4.516 7 H 0.050 0.950 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.032 3.968 15 C 0.523 3.477 16 O -0.558 6.558 17 N -0.716 5.716 18 C 0.187 3.813 19 H 0.074 0.926 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.084 4.084 26 C -0.147 4.147 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.083 0.917 34 H -0.009 1.009 35 H 0.004 0.996 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.410 0.590 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.139 0.861 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.288 -13.475 -13.082 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.212 4.212 3 C -0.035 4.035 4 N -0.252 5.252 5 C 0.082 3.918 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.196 1.196 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.099 4.099 15 C 0.310 3.690 16 O -0.435 6.435 17 N -0.370 5.370 18 C 0.083 3.917 19 H 0.092 0.908 20 C -0.208 4.208 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.088 4.088 25 C -0.121 4.121 26 C -0.204 4.204 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.008 0.992 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.248 0.752 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.157 0.843 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.333 -12.346 -13.423 28.066 hybrid contribution -1.147 -0.136 0.798 1.403 sum 20.186 -12.481 -12.626 26.883 Atomic orbital electron populations 1.23868 0.96004 1.01846 0.99737 1.23598 0.97079 0.99548 1.00966 1.21227 0.94086 0.94185 0.94004 1.61973 1.15467 1.44404 1.03385 1.19443 0.91296 0.95794 0.85218 1.21396 1.24807 0.98814 1.10452 0.93169 1.25727 0.97561 0.99917 0.95787 1.70055 1.38492 1.32084 1.16274 0.85486 0.78257 0.79773 0.78032 1.19555 1.20263 1.20309 1.22029 0.94997 0.95503 0.97418 1.20700 0.80911 0.82035 0.85365 1.90627 1.71202 1.29658 1.52011 1.46039 1.31618 1.28102 1.31268 1.19688 0.86581 0.99459 0.85980 0.90819 1.22087 1.00577 1.01576 0.96567 1.19843 0.93766 0.95692 1.01025 1.21166 0.92059 1.00209 1.00081 1.21229 0.97836 0.95251 0.99645 1.20227 0.96136 0.94792 0.97627 1.20588 0.92538 1.00591 0.98368 1.21747 1.01250 1.01485 0.95941 1.21259 0.91643 1.00747 1.00171 1.21094 0.98826 0.94365 0.99047 0.87087 0.89660 0.86816 0.92681 0.89885 0.99157 0.97790 0.92781 0.90660 0.87832 0.75226 0.93591 0.90478 0.91178 0.85461 0.84570 0.90214 0.90058 0.93174 0.93029 0.91198 0.84288 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.32 14.32 67.78 0.97 -5.34 16 2 C -0.19 -7.12 7.46 25.65 0.19 -6.93 16 3 C 0.09 3.94 5.32 85.56 0.45 4.39 16 4 N -0.53 -23.88 4.39 -909.97 -4.00 -27.88 16 5 C 0.21 11.00 4.60 85.56 0.39 11.39 16 6 C -0.52 -29.97 8.51 25.60 0.22 -29.75 16 7 H 0.05 2.99 7.68 -2.91 -0.02 2.97 16 8 C 0.01 0.47 5.46 84.66 0.46 0.94 16 9 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 10 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.03 1.10 5.27 85.56 0.45 1.55 16 15 C 0.52 17.00 7.50 87.65 0.66 17.65 16 16 O -0.56 -22.55 13.98 -3.02 -0.04 -22.59 16 17 N -0.72 -16.74 5.03 -446.10 -2.24 -18.98 16 18 C 0.19 4.09 2.78 44.24 0.12 4.21 16 19 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 20 C -0.15 -2.97 9.46 71.98 0.68 -2.29 16 21 C -0.10 -1.89 4.95 -19.87 -0.10 -1.99 16 22 C -0.12 -2.05 9.67 22.27 0.22 -1.83 16 23 C -0.12 -1.84 9.70 22.27 0.22 -1.62 16 24 C -0.09 -1.23 5.13 -19.87 -0.10 -1.33 16 25 C -0.08 -0.81 6.07 29.85 0.18 -0.63 16 26 C -0.15 -1.46 9.90 71.98 0.71 -0.75 16 27 C -0.12 -1.69 9.70 22.27 0.22 -1.48 16 28 C -0.12 -1.80 9.05 22.27 0.20 -1.60 16 29 H 0.11 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.08 3.24 7.84 -2.91 -0.02 3.22 16 31 H 0.11 3.69 6.75 -2.91 -0.02 3.67 16 32 H 0.05 2.60 7.02 -2.39 -0.02 2.59 16 33 H 0.08 3.48 5.84 -2.39 -0.01 3.47 16 34 H -0.01 -0.52 6.77 -2.39 -0.02 -0.53 16 35 H 0.00 0.23 7.81 -2.39 -0.02 0.21 16 36 H 0.26 14.77 8.31 -92.70 -0.77 13.99 16 37 H 0.08 2.30 6.26 -2.39 -0.01 2.29 16 38 H 0.10 3.40 7.86 -2.39 -0.02 3.39 16 39 H 0.41 7.29 6.87 -92.71 -0.64 6.66 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.13 2.04 8.04 -2.91 -0.02 2.02 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 46 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 47 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.13 1.65 6.92 -2.91 -0.02 1.63 16 Total: -1.00 -70.76 412.98 2.43 -68.32 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.26 Total: 24.14 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 6.14 Total: -15.40 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.96 Total: -101.92 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.04 Total: -22.59 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.76 2.43 -68.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428858756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.563 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds