Wall clock time and date at job start Tue Mar 31 2020 16:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47148 * 2 1 4 4 C 1.38261 * 119.99816 * 264.99639 * 3 2 1 5 5 C 1.38205 * 119.99844 * 179.72736 * 4 3 2 6 6 C 1.38256 * 120.00362 * 0.26961 * 5 4 3 7 7 C 1.38219 * 119.99689 * 359.97438 * 6 5 4 8 8 C 1.38216 * 120.00218 * 85.18744 * 3 2 1 9 9 C 1.50699 * 119.99886 * 0.04293 * 8 3 2 10 10 C 1.50699 * 109.47248 * 85.16856 * 9 8 3 11 11 O 1.21284 * 120.00216 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99988 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00137 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47233 * 180.02562 * 13 12 10 15 15 C 1.53037 * 109.45735 * 295.02430 * 14 13 12 16 16 C 1.53195 * 109.31040 * 178.60188 * 15 14 13 17 17 N 1.46929 * 108.76439 * 54.65936 * 16 15 14 18 18 C 1.36936 * 120.63087 * 126.40791 * 17 16 15 19 19 H 1.07999 * 119.99695 * 331.81999 * 18 17 16 20 20 C 1.38807 * 119.99901 * 151.82369 * 18 17 16 21 21 N 1.31617 * 120.00230 * 343.07367 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 163.07200 * 20 18 17 23 23 H 1.48493 * 109.47226 * 89.99819 * 22 20 18 24 24 H 1.48497 * 109.46997 * 210.00143 * 22 20 18 25 25 H 1.48505 * 109.46975 * 329.99862 * 22 20 18 26 26 C 1.46918 * 118.73492 * 306.38224 * 17 16 15 27 27 C 1.53043 * 109.45661 * 174.97323 * 14 13 12 28 28 H 1.08996 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47019 * 300.00754 * 1 2 3 30 30 H 1.08999 * 109.46514 * 59.99976 * 1 2 3 31 31 H 1.08999 * 109.47077 * 239.99783 * 2 1 3 32 32 H 1.09004 * 109.46642 * 119.99552 * 2 1 3 33 33 H 1.07997 * 119.99828 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99855 * 180.25615 * 5 4 3 35 35 H 1.07996 * 120.00599 * 179.97438 * 6 5 4 36 36 H 1.07997 * 120.00031 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46796 * 205.16692 * 9 8 3 38 38 H 1.09003 * 109.47113 * 325.16668 * 9 8 3 39 39 H 0.97002 * 120.00499 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.47332 * 299.99885 * 13 12 10 41 41 H 1.09003 * 109.47186 * 59.99795 * 13 12 10 42 42 H 1.08996 * 109.45910 * 54.99887 * 14 13 12 43 43 H 1.08996 * 109.50166 * 298.56619 * 15 14 13 44 44 H 1.09001 * 109.49810 * 58.66411 * 15 14 13 45 45 H 1.08994 * 109.59669 * 294.86789 * 16 15 14 46 46 H 1.09005 * 109.70036 * 174.50521 * 16 15 14 47 47 H 0.97001 * 120.00321 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.59122 * 293.81674 * 26 17 16 49 49 H 1.09003 * 109.70407 * 173.47143 * 26 17 16 50 50 H 1.08997 * 109.49881 * 301.33183 * 27 14 13 51 51 H 1.08996 * 109.49792 * 61.40144 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8166 3.3426 -1.1933 6 6 2.9486 4.0293 -0.0006 7 6 2.6246 3.4109 1.1923 8 6 2.1681 2.1059 1.1927 9 6 1.8146 1.4317 2.4933 10 6 2.9974 0.6381 2.9855 11 8 4.0261 0.6213 2.3432 12 7 2.9122 -0.0528 4.1395 13 6 4.0623 -0.8238 4.6183 14 6 3.7033 -1.5084 5.9387 15 6 3.4519 -0.4465 7.0116 16 6 3.0588 -1.1343 8.3228 17 7 4.0979 -2.1121 8.6737 18 6 4.6968 -2.0823 9.9048 19 1 4.7787 -1.1495 10.4430 20 6 5.1988 -3.2508 10.4608 21 7 4.8204 -4.4197 9.9888 22 14 6.4115 -3.1645 11.8791 23 1 5.6696 -3.1650 13.1654 24 1 7.3163 -4.3409 11.8290 25 1 7.2126 -1.9188 11.7702 26 6 4.4817 -3.1227 7.6787 27 6 4.8585 -2.4127 6.3746 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.2586 1.5012 -2.1245 34 1 3.0696 3.8259 -2.1255 35 1 3.3048 5.0488 -0.0010 36 1 2.7280 3.9470 2.1240 37 1 1.5501 2.1866 3.2337 38 1 0.9679 0.7631 2.3376 39 1 2.0894 -0.0397 4.6531 40 1 4.3270 -1.5790 3.8782 41 1 4.9088 -0.1550 4.7737 42 1 2.8034 -2.1085 5.8037 43 1 4.3592 0.1378 7.1649 44 1 2.6448 0.2116 6.6901 45 1 2.1044 -1.6451 8.1959 46 1 2.9732 -0.3916 9.1161 47 1 5.1715 -5.2364 10.3771 48 1 3.6433 -3.7957 7.4993 49 1 5.3358 -3.6927 8.0445 50 1 5.0526 -3.1541 5.5997 51 1 5.7525 -1.8097 6.5334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442644317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:27 Heat of formation + Delta-G solvation = -33.700116 kcal Electronic energy + Delta-G solvation = -27989.333267 eV Core-core repulsion = 24273.133244 eV Total energy + Delta-G solvation = -3716.200024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.27530 -40.04825 -39.18851 -36.37450 -35.18967 -34.46980 -33.51316 -32.48190 -31.40669 -30.38767 -29.20871 -27.76992 -25.65364 -24.69051 -23.85531 -23.13492 -22.53519 -21.74401 -21.11538 -20.59793 -18.72831 -18.00313 -17.46568 -17.10507 -16.89475 -16.63264 -16.06083 -15.86277 -15.66338 -15.30347 -15.07131 -14.87105 -14.72999 -14.59803 -14.33317 -14.13175 -13.89017 -13.84163 -13.76495 -13.49260 -13.03602 -12.94910 -12.86089 -12.72017 -12.63441 -12.55444 -12.26617 -12.14666 -12.01607 -11.84290 -11.68794 -11.60898 -11.53946 -11.25740 -11.10172 -10.88855 -10.52849 -10.03845 -9.66825 -9.45427 -8.66043 -7.87223 -5.31886 0.45192 0.53786 1.45342 1.47467 1.56699 1.69098 2.26749 2.51254 2.93533 3.27409 3.68961 3.72033 3.84710 3.87750 3.94507 4.01564 4.06464 4.12129 4.15350 4.31858 4.36775 4.51003 4.52939 4.54914 4.56539 4.66223 4.70606 4.74155 4.74224 4.77728 4.83669 4.94395 5.02917 5.04880 5.09463 5.15115 5.19362 5.25348 5.29688 5.31190 5.40501 5.41243 5.49276 5.56242 5.61635 5.65219 5.66411 5.77288 5.79618 6.17081 6.40376 6.62009 7.16216 7.31382 7.88863 8.39280 9.18886 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002044 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.531009 B =13692.032931 C =14045.683989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.716 5.716 13 C 0.138 3.862 14 C -0.077 4.077 15 C -0.113 4.113 16 C 0.139 3.861 17 N -0.613 5.613 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.178 3.822 27 C -0.123 4.123 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.019 0.981 46 H 0.051 0.949 47 H 0.249 0.751 48 H -0.001 1.001 49 H 0.050 0.950 50 H 0.067 0.933 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 14.311 -21.858 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.139 4.139 8 C -0.080 4.080 9 C -0.140 4.140 10 C 0.300 3.700 11 O -0.460 6.460 12 N -0.369 5.369 13 C 0.014 3.986 14 C -0.096 4.096 15 C -0.152 4.152 16 C 0.014 3.986 17 N -0.336 5.336 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.792 3.208 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.197 1.197 26 C 0.052 3.948 27 C -0.162 4.162 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.933 14.147 -22.232 28.162 hybrid contribution 0.659 -0.501 1.274 1.519 sum -9.274 13.646 -20.958 26.674 Atomic orbital electron populations 1.21746 0.93077 1.02552 1.02584 1.20568 0.97306 0.92083 1.02523 1.19939 0.98606 0.96351 0.93022 1.21258 1.00260 0.95720 0.97854 1.21415 0.99288 0.94794 0.98925 1.21376 1.00581 1.00939 0.92525 1.21264 0.98809 0.94753 0.99052 1.19345 1.00502 0.94373 0.93750 1.20794 0.96530 1.00658 0.96003 1.21022 0.89663 0.79117 0.80204 1.90715 1.33324 1.64401 1.57587 1.45971 1.17274 1.49751 1.23883 1.21210 0.88508 0.94277 0.94638 1.21136 0.98971 0.96531 0.92931 1.21922 1.01384 0.97043 0.94874 1.21088 0.90297 0.91512 0.95702 1.44336 1.42382 1.34966 1.11960 1.19484 1.31477 0.92710 0.95466 0.91800 1.25777 1.02911 0.95144 1.00934 1.70171 1.45639 0.96980 1.45284 0.85331 0.79054 0.76961 0.79440 1.21033 1.21938 1.19744 1.20553 0.97423 0.89842 0.86990 1.21981 0.97717 0.98729 0.97816 0.91404 0.91897 0.92198 0.90994 0.92321 0.84931 0.84280 0.84453 0.85179 0.85496 0.85797 0.74779 0.92373 0.93024 0.90327 0.93354 0.89419 0.96267 0.93034 0.94156 0.98280 0.93189 0.91451 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.72 71.98 0.70 -1.01 16 2 C -0.09 -1.47 5.38 29.85 0.16 -1.31 16 3 C -0.08 -1.55 5.13 -19.86 -0.10 -1.65 16 4 C -0.13 -2.42 9.68 22.27 0.22 -2.20 16 5 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 6 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 7 C -0.12 -2.30 9.68 22.27 0.22 -2.08 16 8 C -0.08 -1.56 4.37 -19.87 -0.09 -1.65 16 9 C -0.10 -1.57 5.16 29.10 0.15 -1.42 16 10 C 0.51 11.80 7.04 87.66 0.62 12.42 16 11 O -0.58 -19.05 16.03 -3.04 -0.05 -19.10 16 12 N -0.72 -14.62 5.27 -463.04 -2.44 -17.06 16 13 C 0.14 3.58 5.06 86.38 0.44 4.02 16 14 C -0.08 -2.21 2.19 -10.77 -0.02 -2.23 16 15 C -0.11 -3.36 5.25 30.67 0.16 -3.20 16 16 C 0.14 5.41 6.52 86.36 0.56 5.97 16 17 N -0.61 -30.29 2.99 -699.11 -2.09 -32.39 16 18 C -0.26 -14.35 9.58 84.03 0.81 -13.55 16 19 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 20 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 21 N -0.93 -55.38 11.19 21.65 0.24 -55.14 16 22 Si 0.96 45.09 29.59 68.60 2.03 47.11 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.18 8.44 5.30 86.36 0.46 8.90 16 27 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.67 6.83 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 32 H 0.06 1.13 6.42 -2.38 -0.02 1.11 16 33 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.13 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.12 1.42 5.63 -2.39 -0.01 1.40 16 39 H 0.42 6.02 7.65 -92.71 -0.71 5.31 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.92 7.15 -2.39 -0.02 1.90 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 1.99 7.93 -2.38 -0.02 1.97 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 50 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 51 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -71.99 400.47 3.19 -68.80 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.20 Total: 17.63 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.30 Total: -9.87 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.29 Total: -104.58 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -71.99 3.19 -68.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442644317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.101 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds