Wall clock time and date at job start Tue Mar 31 2020 16:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50691 * 109.47168 * 2 1 4 4 C 1.38305 * 119.96393 * 98.79608 * 3 2 1 5 5 C 1.38255 * 120.14315 * 180.02562 * 4 3 2 6 6 C 1.38143 * 120.06806 * 359.97438 * 5 4 3 7 7 C 1.38848 * 119.92776 * 359.97438 * 6 5 4 8 8 N 1.39945 * 120.06696 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99831 * 339.44137 * 8 7 6 10 10 O 1.21586 * 119.99995 * 354.55732 * 9 8 7 11 11 N 1.34776 * 120.00078 * 174.56683 * 9 8 7 12 12 C 1.46499 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.02062 * 325.06032 * 12 11 9 14 14 C 1.53873 * 110.02757 * 86.45536 * 12 11 9 15 15 C 1.54271 * 106.59929 * 119.28548 * 14 12 11 16 16 C 1.54883 * 104.19541 * 23.60710 * 15 14 12 17 17 H 1.08997 * 110.76336 * 80.55702 * 16 15 14 18 18 C 1.50701 * 110.75780 * 203.74534 * 16 15 14 19 19 H 1.07997 * 120.00160 * 118.54406 * 18 16 15 20 20 C 1.37878 * 119.99741 * 298.54459 * 18 16 15 21 21 N 1.31512 * 120.00249 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99950 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47055 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46849 * 120.00184 * 22 20 18 25 25 H 1.48499 * 109.47466 * 240.00118 * 22 20 18 26 26 C 1.54266 * 110.03131 * 203.61959 * 12 11 9 27 27 C 1.38090 * 119.96926 * 279.04668 * 3 2 1 28 28 C 1.50704 * 120.03319 * 0.02850 * 27 3 2 29 29 C 1.53002 * 109.46790 * 267.55502 * 28 27 3 30 30 H 1.09000 * 109.47237 * 54.76100 * 1 2 3 31 31 H 1.09005 * 109.47643 * 174.75787 * 1 2 3 32 32 H 1.08994 * 109.47568 * 294.75942 * 1 2 3 33 33 H 1.09003 * 109.46811 * 240.00222 * 2 1 3 34 34 H 1.08998 * 109.47047 * 120.00381 * 2 1 3 35 35 H 1.08001 * 119.92895 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.97028 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.03549 * 179.97438 * 6 5 4 38 38 H 0.96998 * 119.99791 * 159.15913 * 8 7 6 39 39 H 0.97009 * 119.99562 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.02889 * 238.56499 * 14 12 11 41 41 H 1.08993 * 110.03934 * 0.02562 * 14 12 11 42 42 H 1.09004 * 110.48526 * 142.28645 * 15 14 12 43 43 H 1.09000 * 110.48349 * 264.92800 * 15 14 12 44 44 H 0.96998 * 120.00320 * 179.97438 * 21 20 18 45 45 H 1.09008 * 110.48706 * 335.78128 * 26 12 11 46 46 H 1.08998 * 110.48695 * 98.42699 * 26 12 11 47 47 H 1.09000 * 109.47028 * 27.55518 * 28 27 3 48 48 H 1.09003 * 109.46926 * 147.55535 * 28 27 3 49 49 H 1.08997 * 109.47306 * 304.56761 * 29 28 27 50 50 H 1.08992 * 109.47074 * 64.57294 * 29 28 27 51 51 H 1.09003 * 109.46918 * 184.57624 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4353 2.0109 1.1841 5 6 2.8963 3.3143 1.1885 6 6 2.9562 4.0312 0.0091 7 6 2.5533 3.4412 -1.1814 8 7 2.6133 4.1646 -2.3779 9 6 2.6537 5.5115 -2.3497 10 8 2.5384 6.1012 -1.2927 11 7 2.8217 6.2047 -3.4933 12 6 2.8651 7.6688 -3.4627 13 1 2.1881 8.0462 -2.6964 14 6 4.2999 8.1477 -3.1809 15 6 4.7302 8.9913 -4.3988 16 6 3.3946 9.4703 -5.0199 17 1 3.0027 10.3305 -4.4772 18 6 3.5719 9.7983 -6.4801 19 1 3.0168 9.2512 -7.2277 20 6 4.4429 10.7968 -6.8615 21 7 5.1193 11.4626 -5.9512 22 14 4.6632 11.2028 -8.6715 23 1 3.7952 10.3158 -9.4870 24 1 4.2864 12.6192 -8.9104 25 1 6.0827 10.9967 -9.0559 26 6 2.4734 8.2379 -4.8421 27 6 2.0849 2.1338 -1.1814 28 6 1.6396 1.4920 -2.4702 29 6 2.8438 0.8517 -3.1637 30 1 -0.3634 0.5929 -0.8393 31 1 -0.3634 -1.0234 -0.0939 32 1 -0.3634 0.4304 0.9331 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.3890 1.4527 2.1075 36 1 3.2107 3.7723 2.1147 37 1 3.3160 5.0495 0.0132 38 1 2.6299 3.6965 -3.2273 39 1 2.9139 5.7342 -4.3366 40 1 4.3191 8.7584 -2.2782 41 1 4.9641 7.2910 -3.0673 42 1 5.3300 9.8437 -4.0797 43 1 5.2840 8.3790 -5.1105 44 1 5.7323 12.1648 -6.2196 45 1 2.6628 7.5039 -5.6254 46 1 1.4262 8.5404 -4.8466 47 1 0.8940 0.7263 -2.2562 48 1 1.2053 2.2499 -3.1223 49 1 3.6227 1.6011 -3.3047 50 1 3.2285 0.0394 -2.5472 51 1 2.5381 0.4587 -4.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455273400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:45 Heat of formation + Delta-G solvation = -29.348184 kcal Electronic energy + Delta-G solvation = -28221.004047 eV Core-core repulsion = 24504.992737 eV Total energy + Delta-G solvation = -3716.011310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.91494 -39.34365 -37.33013 -35.16680 -34.84690 -33.75830 -32.70057 -31.86377 -29.13415 -29.06142 -28.16781 -26.86068 -24.63482 -24.05374 -23.49569 -22.21389 -20.93641 -20.39991 -19.60965 -19.24239 -18.32249 -17.15621 -16.44473 -16.15910 -15.89828 -15.50176 -14.81040 -14.64786 -14.54484 -14.20061 -14.11687 -14.01225 -13.77216 -13.64607 -13.47892 -12.68360 -12.63589 -12.38753 -12.36211 -12.21525 -12.01015 -11.79515 -11.62156 -11.43598 -11.17030 -11.06880 -10.99190 -10.95741 -10.81440 -10.57064 -10.45748 -10.27369 -9.99953 -9.65695 -9.54084 -9.25429 -8.83186 -8.71311 -8.62102 -8.39551 -7.92098 -6.03008 -4.06701 1.29400 1.37430 2.67567 3.19301 3.27409 3.35960 3.38725 3.80220 4.23772 4.41744 4.50505 4.60632 4.72467 4.74594 5.04743 5.09751 5.15189 5.18284 5.24244 5.29143 5.39159 5.44679 5.48645 5.53209 5.58367 5.59929 5.64204 5.73484 5.80143 5.86219 5.88806 5.92705 6.08282 6.23077 6.27826 6.31327 6.43003 6.55598 6.57003 6.59500 6.64909 6.71679 6.87720 6.90815 7.01524 7.09252 7.25130 7.34174 7.70411 7.86384 8.00236 8.02806 8.39968 8.62143 8.95607 9.57672 11.06069 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.002225 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.148273 B =12580.648772 C =13245.578388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.061 4.061 4 C -0.145 4.145 5 C -0.099 4.099 6 C -0.141 4.141 7 C 0.182 3.818 8 N -0.685 5.685 9 C 0.699 3.301 10 O -0.572 6.572 11 N -0.727 5.727 12 C 0.155 3.845 13 H 0.081 0.919 14 C -0.135 4.135 15 C -0.100 4.100 16 C 0.051 3.949 17 H 0.033 0.967 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.089 4.089 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.404 0.596 39 H 0.394 0.606 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 -23.562 10.017 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.062 4.062 4 C -0.164 4.164 5 C -0.118 4.118 6 C -0.162 4.162 7 C 0.086 3.914 8 N -0.331 5.331 9 C 0.400 3.600 10 O -0.450 6.450 11 N -0.380 5.380 12 C 0.051 3.949 13 H 0.099 0.901 14 C -0.174 4.174 15 C -0.138 4.138 16 C 0.033 3.967 17 H 0.051 0.949 18 C -0.552 4.552 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.159 4.159 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.207 4.207 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.240 0.760 39 H 0.228 0.772 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.862 -22.763 10.912 25.915 hybrid contribution 0.327 -0.111 -1.749 1.783 sum -5.535 -22.874 9.163 25.255 Atomic orbital electron populations 1.21792 0.94854 1.01541 1.02431 1.20525 0.96103 0.92767 1.02671 1.19409 0.98942 0.95676 0.92153 1.20926 1.02631 0.95631 0.97232 1.21041 0.98895 0.94022 0.97851 1.21721 1.01062 1.02485 0.90900 1.17401 0.97618 0.90534 0.85842 1.42770 1.76730 1.05438 1.08171 1.16048 0.78045 0.80753 0.85194 1.90830 1.56681 1.68463 1.28993 1.45630 1.76587 1.08257 1.07515 1.21821 0.97889 0.75539 0.99625 0.90057 1.22672 0.94990 0.99469 1.00284 1.22309 1.00222 0.97738 0.93566 1.19557 0.90118 0.90995 0.96066 0.94912 1.21122 1.24292 1.18151 0.91681 0.92613 1.24982 0.95768 0.95994 0.97205 1.69966 1.27029 1.23075 1.32529 0.86585 0.77825 0.78202 0.85650 1.19849 1.21070 1.21105 1.22772 1.00021 1.00088 0.93036 1.19281 1.04196 0.93401 0.95579 1.20545 0.98440 1.00049 0.93572 1.21785 0.97774 1.00979 1.00141 0.92292 0.92535 0.92516 0.90915 0.91187 0.86499 0.86035 0.82633 0.76000 0.77158 0.92471 0.93223 0.91201 0.93544 0.93090 0.92062 0.92759 0.90166 0.91498 0.92711 0.92326 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.58 37.16 0.36 -0.64 16 2 C -0.08 -0.60 5.37 -27.89 -0.15 -0.75 16 3 C -0.06 -0.60 5.13 -104.66 -0.54 -1.14 16 4 C -0.15 -1.48 9.67 -39.55 -0.38 -1.87 16 5 C -0.10 -1.16 10.04 -39.61 -0.40 -1.56 16 6 C -0.14 -1.98 8.77 -39.39 -0.35 -2.33 16 7 C 0.18 2.34 6.47 -83.69 -0.54 1.80 16 8 N -0.69 -8.38 5.07 -14.22 -0.07 -8.45 16 9 C 0.70 10.80 8.39 -86.92 -0.73 10.07 16 10 O -0.57 -10.78 12.95 5.29 0.07 -10.71 16 11 N -0.73 -10.69 5.00 -57.58 -0.29 -10.98 16 12 C 0.16 2.75 3.23 -66.81 -0.22 2.54 16 13 H 0.08 1.53 7.61 -51.93 -0.39 1.14 16 14 C -0.14 -2.61 6.59 -25.61 -0.17 -2.77 16 15 C -0.10 -2.27 5.57 -25.07 -0.14 -2.41 16 16 C 0.05 1.23 2.82 -89.78 -0.25 0.97 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.51 -13.59 8.54 -34.44 -0.29 -13.89 16 19 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 20 C 0.06 1.69 5.33 -17.82 -0.10 1.59 16 21 N -0.89 -25.05 12.02 55.43 0.67 -24.39 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.12 -2.32 5.94 -25.07 -0.15 -2.47 16 27 C -0.12 -1.28 5.15 -104.44 -0.54 -1.82 16 28 C -0.09 -0.71 4.75 -27.88 -0.13 -0.84 16 29 C -0.15 -1.04 9.76 37.16 0.36 -0.68 16 30 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 35 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.16 2.54 5.47 -52.49 -0.29 2.25 16 38 H 0.40 3.78 6.98 -40.82 -0.28 3.50 16 39 H 0.39 4.78 8.36 -40.82 -0.34 4.44 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 43 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 45 H 0.06 1.12 7.63 -51.92 -0.40 0.73 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 0.57 5.08 -51.93 -0.26 0.30 16 48 H 0.07 0.53 7.06 -51.93 -0.37 0.16 16 49 H 0.05 0.41 7.85 -51.93 -0.41 0.01 16 50 H 0.06 0.40 7.44 -51.93 -0.39 0.01 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -30.19 395.97 -11.39 -41.58 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.36 Total: 7.37 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.35 Total: -16.19 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.31 Total: -43.82 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.19 -11.39 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455273400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.228 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds