Wall clock time and date at job start Tue Mar 31 2020 16:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50691 * 109.47168 * 2 1 4 4 C 1.38305 * 119.96393 * 98.79608 * 3 2 1 5 5 C 1.38255 * 120.14315 * 180.02562 * 4 3 2 6 6 C 1.38143 * 120.06806 * 359.97438 * 5 4 3 7 7 C 1.38848 * 119.92776 * 359.97438 * 6 5 4 8 8 N 1.39945 * 120.06696 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99831 * 339.44137 * 8 7 6 10 10 O 1.21586 * 119.99995 * 354.55732 * 9 8 7 11 11 N 1.34776 * 120.00078 * 174.56683 * 9 8 7 12 12 C 1.46499 * 120.00205 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.02062 * 325.06032 * 12 11 9 14 14 C 1.53873 * 110.02757 * 86.45536 * 12 11 9 15 15 C 1.54271 * 106.59929 * 119.28548 * 14 12 11 16 16 C 1.54883 * 104.19541 * 23.60710 * 15 14 12 17 17 H 1.08997 * 110.76336 * 80.55702 * 16 15 14 18 18 C 1.50701 * 110.75780 * 203.74534 * 16 15 14 19 19 H 1.07997 * 120.00160 * 118.54406 * 18 16 15 20 20 C 1.37878 * 119.99741 * 298.54459 * 18 16 15 21 21 N 1.31512 * 120.00249 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99950 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47055 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46849 * 120.00184 * 22 20 18 25 25 H 1.48499 * 109.47466 * 240.00118 * 22 20 18 26 26 C 1.54266 * 110.03131 * 203.61959 * 12 11 9 27 27 C 1.38090 * 119.96926 * 279.04668 * 3 2 1 28 28 C 1.50704 * 120.03319 * 0.02850 * 27 3 2 29 29 C 1.53002 * 109.46790 * 267.55502 * 28 27 3 30 30 H 1.09000 * 109.47237 * 54.76100 * 1 2 3 31 31 H 1.09005 * 109.47643 * 174.75787 * 1 2 3 32 32 H 1.08994 * 109.47568 * 294.75942 * 1 2 3 33 33 H 1.09003 * 109.46811 * 240.00222 * 2 1 3 34 34 H 1.08998 * 109.47047 * 120.00381 * 2 1 3 35 35 H 1.08001 * 119.92895 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.97028 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.03549 * 179.97438 * 6 5 4 38 38 H 0.96998 * 119.99791 * 159.15913 * 8 7 6 39 39 H 0.97009 * 119.99562 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.02889 * 238.56499 * 14 12 11 41 41 H 1.08993 * 110.03934 * 0.02562 * 14 12 11 42 42 H 1.09004 * 110.48526 * 142.28645 * 15 14 12 43 43 H 1.09000 * 110.48349 * 264.92800 * 15 14 12 44 44 H 0.96998 * 120.00320 * 179.97438 * 21 20 18 45 45 H 1.09008 * 110.48706 * 335.78128 * 26 12 11 46 46 H 1.08998 * 110.48695 * 98.42699 * 26 12 11 47 47 H 1.09000 * 109.47028 * 27.55518 * 28 27 3 48 48 H 1.09003 * 109.46926 * 147.55535 * 28 27 3 49 49 H 1.08997 * 109.47306 * 304.56761 * 29 28 27 50 50 H 1.08992 * 109.47074 * 64.57294 * 29 28 27 51 51 H 1.09003 * 109.46918 * 184.57624 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4353 2.0109 1.1841 5 6 2.8963 3.3143 1.1885 6 6 2.9562 4.0312 0.0091 7 6 2.5533 3.4412 -1.1814 8 7 2.6133 4.1646 -2.3779 9 6 2.6537 5.5115 -2.3497 10 8 2.5384 6.1012 -1.2927 11 7 2.8217 6.2047 -3.4933 12 6 2.8651 7.6688 -3.4627 13 1 2.1881 8.0462 -2.6964 14 6 4.2999 8.1477 -3.1809 15 6 4.7302 8.9913 -4.3988 16 6 3.3946 9.4703 -5.0199 17 1 3.0027 10.3305 -4.4772 18 6 3.5719 9.7983 -6.4801 19 1 3.0168 9.2512 -7.2277 20 6 4.4429 10.7968 -6.8615 21 7 5.1193 11.4626 -5.9512 22 14 4.6632 11.2028 -8.6715 23 1 3.7952 10.3158 -9.4870 24 1 4.2864 12.6192 -8.9104 25 1 6.0827 10.9967 -9.0559 26 6 2.4734 8.2379 -4.8421 27 6 2.0849 2.1338 -1.1814 28 6 1.6396 1.4920 -2.4702 29 6 2.8438 0.8517 -3.1637 30 1 -0.3634 0.5929 -0.8393 31 1 -0.3634 -1.0234 -0.0939 32 1 -0.3634 0.4304 0.9331 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.3890 1.4527 2.1075 36 1 3.2107 3.7723 2.1147 37 1 3.3160 5.0495 0.0132 38 1 2.6299 3.6965 -3.2273 39 1 2.9139 5.7342 -4.3366 40 1 4.3191 8.7584 -2.2782 41 1 4.9641 7.2910 -3.0673 42 1 5.3300 9.8437 -4.0797 43 1 5.2840 8.3790 -5.1105 44 1 5.7323 12.1648 -6.2196 45 1 2.6628 7.5039 -5.6254 46 1 1.4262 8.5404 -4.8466 47 1 0.8940 0.7263 -2.2562 48 1 1.2053 2.2499 -3.1223 49 1 3.6227 1.6011 -3.3047 50 1 3.2285 0.0394 -2.5472 51 1 2.5381 0.4587 -4.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455273400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:44 Heat of formation + Delta-G solvation = -44.538592 kcal Electronic energy + Delta-G solvation = -28221.662752 eV Core-core repulsion = 24504.992737 eV Total energy + Delta-G solvation = -3716.670015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97496 -40.40284 -38.85466 -36.20033 -35.68762 -35.24746 -33.96100 -33.15223 -30.16638 -29.85878 -29.82153 -28.43735 -25.85634 -25.30879 -24.37774 -23.17916 -21.79192 -21.61012 -21.04002 -20.87954 -19.47178 -18.55083 -17.97389 -16.99829 -16.90766 -16.84621 -16.56943 -15.91903 -15.83046 -15.46214 -15.14866 -14.75057 -14.54928 -14.43306 -14.42548 -14.17998 -14.02296 -13.63295 -13.26273 -13.11744 -13.02613 -12.98619 -12.82155 -12.79225 -12.54962 -12.36614 -12.21871 -12.09136 -12.01264 -11.69527 -11.60362 -11.56404 -11.41776 -11.38081 -11.08617 -10.84993 -10.79249 -10.46330 -10.09067 -9.45495 -8.87065 -8.09420 -6.19748 0.41628 0.48497 1.42084 1.44449 1.53623 1.55658 2.02344 2.45207 2.90031 3.14272 3.21615 3.81275 3.88421 3.90354 4.02701 4.11098 4.12006 4.19580 4.36714 4.47711 4.50032 4.55680 4.61031 4.64707 4.67167 4.70441 4.76965 4.87242 4.90546 5.00714 5.03474 5.06048 5.06439 5.10266 5.16050 5.17963 5.24797 5.28132 5.37271 5.37662 5.40789 5.49019 5.56811 5.62939 5.67463 5.73252 5.77115 5.93350 5.99379 6.01272 6.19015 6.37694 6.90906 6.95342 7.44039 7.48210 8.99195 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.002225 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.148273 B =12580.648772 C =13245.578388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.062 4.062 4 C -0.144 4.144 5 C -0.109 4.109 6 C -0.170 4.170 7 C 0.160 3.840 8 N -0.669 5.669 9 C 0.698 3.302 10 O -0.609 6.609 11 N -0.716 5.716 12 C 0.171 3.829 13 H 0.072 0.928 14 C -0.124 4.124 15 C -0.089 4.089 16 C 0.040 3.960 17 H 0.000 1.000 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.283 1.283 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.088 4.088 29 C -0.147 4.147 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.259 0.741 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.045 0.955 50 H 0.061 0.939 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -26.988 9.156 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.063 4.063 4 C -0.163 4.163 5 C -0.128 4.128 6 C -0.191 4.191 7 C 0.064 3.936 8 N -0.316 5.316 9 C 0.399 3.601 10 O -0.489 6.489 11 N -0.371 5.371 12 C 0.065 3.935 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.127 4.127 16 C 0.021 3.979 17 H 0.019 0.981 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.125 4.125 29 C -0.204 4.204 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.257 0.743 39 H 0.247 0.753 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.909 -26.249 10.023 28.935 hybrid contribution 0.635 0.901 -1.395 1.778 sum -6.274 -25.348 8.628 27.501 Atomic orbital electron populations 1.21786 0.94360 1.02499 1.01873 1.20591 0.96370 0.90904 1.03947 1.19829 0.97817 0.97013 0.91646 1.21247 1.01445 0.94996 0.98586 1.21209 0.99198 0.94847 0.97534 1.21605 1.03099 1.01735 0.92646 1.17591 0.98961 0.91586 0.85453 1.42504 1.75951 1.04175 1.08974 1.16139 0.77771 0.81675 0.84549 1.90830 1.58156 1.69530 1.30340 1.45282 1.76605 1.06958 1.08265 1.21388 0.96298 0.77324 0.98462 0.91015 1.22538 0.96304 0.99132 0.98340 1.22075 0.99188 0.96867 0.94604 1.19540 0.91720 0.91951 0.94696 0.98143 1.21508 1.23904 1.18031 0.92969 0.92165 1.25790 0.95720 0.96117 1.01312 1.70108 1.27772 1.23670 1.34481 0.85568 0.77776 0.77872 0.80794 1.18653 1.21110 1.20940 1.22567 0.99399 0.98305 0.94124 1.19580 1.02956 0.92369 0.97157 1.20615 0.99193 1.00349 0.92324 1.21769 0.96978 1.00741 1.00909 0.92911 0.90806 0.93098 0.89743 0.89886 0.84076 0.85058 0.85636 0.74255 0.75297 0.93093 0.92193 0.94388 0.94321 0.93235 0.90528 0.91838 0.88783 0.91386 0.93567 0.92007 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.58 71.98 0.69 -0.84 16 2 C -0.08 -0.90 5.37 29.84 0.16 -0.74 16 3 C -0.06 -1.09 5.13 -19.89 -0.10 -1.19 16 4 C -0.14 -2.70 9.67 22.29 0.22 -2.48 16 5 C -0.11 -2.55 10.04 22.25 0.22 -2.32 16 6 C -0.17 -4.91 8.77 22.39 0.20 -4.72 16 7 C 0.16 4.03 6.47 38.15 0.25 4.28 16 8 N -0.67 -15.86 5.07 -317.18 -1.61 -17.46 16 9 C 0.70 21.41 8.39 179.05 1.50 22.91 16 10 O -0.61 -23.55 12.95 -3.99 -0.05 -23.60 16 11 N -0.72 -20.34 5.00 -454.36 -2.27 -22.61 16 12 C 0.17 6.01 3.23 45.72 0.15 6.16 16 13 H 0.07 2.72 7.61 -2.39 -0.02 2.71 16 14 C -0.12 -4.86 6.59 31.32 0.21 -4.65 16 15 C -0.09 -4.15 5.57 31.67 0.18 -3.98 16 16 C 0.04 1.94 2.82 -10.25 -0.03 1.91 16 17 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 18 C -0.53 -27.93 8.54 25.60 0.22 -27.71 16 19 H 0.06 3.08 7.78 -2.91 -0.02 3.05 16 20 C 0.01 0.50 5.33 84.66 0.45 0.95 16 21 N -0.92 -53.38 12.02 21.45 0.26 -53.12 16 22 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C -0.11 -3.98 5.94 31.67 0.19 -3.80 16 27 C -0.12 -2.27 5.15 -19.74 -0.10 -2.37 16 28 C -0.09 -1.17 4.75 29.85 0.14 -1.03 16 29 C -0.15 -1.63 9.76 71.98 0.70 -0.92 16 30 H 0.05 0.62 6.66 -2.39 -0.02 0.60 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.77 6.43 -2.39 -0.02 0.76 16 34 H 0.08 0.74 8.01 -2.39 -0.02 0.72 16 35 H 0.14 1.90 8.04 -2.91 -0.02 1.88 16 36 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.13 4.38 5.47 -2.91 -0.02 4.37 16 38 H 0.42 7.13 6.98 -92.71 -0.65 6.49 16 39 H 0.41 9.08 8.36 -92.70 -0.78 8.30 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 42 H 0.04 1.98 7.37 -2.39 -0.02 1.97 16 43 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 44 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.08 2.65 7.63 -2.38 -0.02 2.63 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.09 1.02 5.08 -2.39 -0.01 1.00 16 48 H 0.07 0.90 7.06 -2.39 -0.02 0.89 16 49 H 0.05 0.60 7.85 -2.39 -0.02 0.58 16 50 H 0.06 0.65 7.44 -2.39 -0.02 0.64 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -67.28 395.97 3.11 -64.17 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.48 Total: 28.27 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.24 Total: -20.52 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.62 Total: -93.20 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -67.28 3.11 -64.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455273400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.636 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds