Wall clock time and date at job start Tue Mar 31 2020 16:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53131 * 1 3 3 C 1.54470 * 107.35295 * 2 1 4 4 C 1.52710 * 109.87729 * 116.77378 * 2 1 3 5 5 N 1.46614 * 109.85984 * 77.51388 * 4 2 1 6 6 C 1.34796 * 120.99449 * 235.43360 * 5 4 2 7 7 O 1.21586 * 119.99842 * 5.39813 * 6 5 4 8 8 N 1.34774 * 120.00053 * 185.38891 * 6 5 4 9 9 C 1.39954 * 120.00176 * 174.22704 * 8 6 5 10 10 C 1.39290 * 119.94450 * 145.46923 * 9 8 6 11 11 C 1.38490 * 120.42810 * 180.02562 * 10 9 8 12 12 C 1.37686 * 120.32050 * 0.25051 * 11 10 9 13 13 C 1.40743 * 119.88035 * 359.43310 * 12 11 10 14 14 C 1.41412 * 120.20564 * 180.31057 * 13 12 11 15 15 H 1.07996 * 119.99699 * 214.37892 * 14 13 12 16 16 C 1.39930 * 120.00095 * 34.39024 * 14 13 12 17 17 N 1.30828 * 119.99731 * 5.58463 * 16 14 13 18 18 Si 1.86800 * 119.99973 * 185.58760 * 16 14 13 19 19 H 1.48491 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46885 * 119.99650 * 18 16 14 21 21 H 1.48500 * 109.47186 * 239.99552 * 18 16 14 22 22 C 1.38226 * 119.94676 * 325.45320 * 9 8 6 23 23 C 1.46616 * 118.01472 * 56.12691 * 5 4 2 24 24 C 1.52730 * 109.78222 * 303.71856 * 23 5 4 25 25 C 1.53125 * 109.87971 * 282.82721 * 24 23 5 26 26 C 1.54456 * 107.65554 * 166.20342 * 24 23 5 27 27 C 1.51748 * 111.25985 * 242.01535 * 2 1 3 28 28 H 1.08996 * 109.47148 * 308.84535 * 1 2 3 29 29 H 1.09007 * 109.46652 * 68.84314 * 1 2 3 30 30 H 1.08997 * 109.47444 * 188.83994 * 1 2 3 31 31 H 1.08998 * 109.47310 * 178.23297 * 3 2 1 32 32 H 1.08999 * 109.46710 * 298.23470 * 3 2 1 33 33 H 1.08992 * 109.47049 * 58.23069 * 3 2 1 34 34 H 1.09254 * 109.57927 * 317.23862 * 4 2 1 35 35 H 1.09245 * 109.60296 * 197.83935 * 4 2 1 36 36 H 0.97002 * 119.99761 * 354.23712 * 8 6 5 37 37 H 1.08002 * 119.78290 * 359.97438 * 10 9 8 38 38 H 1.07993 * 119.83633 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.05598 * 179.70618 * 12 11 10 40 40 H 0.97005 * 120.00006 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.16485 * 359.96661 * 22 9 8 42 42 H 1.09231 * 109.47182 * 64.05491 * 23 5 4 43 43 H 1.09231 * 109.47493 * 183.37084 * 23 5 4 44 44 H 1.09000 * 109.47294 * 189.81689 * 25 24 23 45 45 H 1.09006 * 109.47087 * 309.81866 * 25 24 23 46 46 H 1.09004 * 109.47030 * 69.81619 * 25 24 23 47 47 H 1.08999 * 109.46847 * 298.35800 * 26 24 23 48 48 H 1.08999 * 109.47147 * 58.35616 * 26 24 23 49 49 H 1.08998 * 109.47261 * 178.35718 * 26 24 23 50 50 H 1.10287 * 108.55942 * 43.70688 * 27 2 1 51 51 H 1.10308 * 108.52311 * 158.32291 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5313 0.0000 0.0000 3 6 1.9920 1.4744 0.0000 4 6 2.0505 -0.6469 1.2822 5 7 1.9395 -2.1056 1.1844 6 6 1.2682 -2.8145 2.1138 7 8 0.6611 -2.2389 2.9960 8 7 1.2698 -4.1614 2.0649 9 6 0.6761 -4.8997 3.0950 10 6 0.0298 -6.0995 2.8072 11 6 -0.5615 -6.8379 3.8186 12 6 -0.5214 -6.3908 5.1202 13 6 0.1338 -5.1835 5.4270 14 6 0.1848 -4.7211 6.7624 15 1 0.1525 -3.6615 6.9685 16 6 0.2775 -5.6365 7.8167 17 7 0.4269 -6.9116 7.5647 18 14 0.1877 -5.0379 9.5840 19 1 0.0187 -3.5627 9.5989 20 1 -0.9677 -5.6760 10.2646 21 1 1.4413 -5.3993 10.2933 22 6 0.7322 -4.4371 4.3964 23 6 2.5936 -2.7718 0.0539 24 6 2.0843 -2.1811 -1.2593 25 6 0.6928 -2.7368 -1.5752 26 6 3.0341 -2.6499 -2.3834 27 6 2.0815 -0.6636 -1.2489 28 1 -0.3633 0.6445 0.8004 29 1 -0.3633 0.3709 -0.9585 30 1 -0.3634 -1.0154 0.1579 31 1 3.0808 1.5149 0.0317 32 1 1.6363 1.9661 -0.9054 33 1 1.5840 1.9825 0.8736 34 1 1.4643 -0.2938 2.1338 35 1 3.0964 -0.3707 1.4345 36 1 1.6826 -4.6190 1.3159 37 1 -0.0110 -6.4559 1.7885 38 1 -1.0604 -7.7667 3.5846 39 1 -0.9881 -6.9676 5.9050 40 1 0.4908 -7.5462 8.2956 41 1 1.2337 -3.5073 4.6207 42 1 3.6745 -2.6308 0.1240 43 1 2.3733 -3.8412 0.0843 44 1 0.4093 -2.4521 -2.5885 45 1 0.7087 -3.8238 -1.4942 46 1 -0.0300 -2.3303 -0.8678 47 1 4.0387 -2.2734 -2.1908 48 1 3.0537 -3.7394 -2.4117 49 1 2.6802 -2.2679 -3.3410 50 1 1.5045 -0.3077 -2.1187 51 1 3.1144 -0.3103 -1.4073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455912411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:46 Heat of formation + Delta-G solvation = -19.112332 kcal Electronic energy + Delta-G solvation = -29426.817803 eV Core-core repulsion = 25711.250354 eV Total energy + Delta-G solvation = -3715.567450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.76039 -38.87788 -37.09541 -35.44752 -34.24897 -33.98821 -32.80422 -29.72925 -28.31877 -27.97873 -26.91114 -26.84497 -26.68035 -25.46620 -25.11372 -21.45697 -20.84783 -20.18401 -19.55475 -18.21226 -18.04065 -17.24754 -15.97732 -15.57843 -15.20532 -14.88361 -14.76636 -14.60603 -14.49231 -14.27394 -14.06020 -13.63234 -13.47991 -12.98405 -12.82985 -12.62611 -12.32643 -12.26318 -12.20568 -12.13213 -11.99125 -11.86848 -11.75390 -11.58805 -11.17635 -11.15714 -11.07879 -10.95203 -10.88038 -10.83637 -10.51379 -10.38255 -10.29002 -10.07944 -9.58586 -9.37124 -9.15656 -8.91116 -8.41645 -7.30204 -6.81261 -6.54730 -4.28607 2.76661 2.88781 3.03084 3.15983 3.22335 3.25149 3.73859 4.05700 4.14802 4.37601 4.50030 4.53894 4.70124 4.78618 4.82578 4.94190 5.11113 5.22645 5.37094 5.41015 5.45754 5.46371 5.51635 5.57562 5.61305 5.69884 5.72972 5.74210 5.79610 5.81919 5.86158 5.92833 6.01775 6.07409 6.16370 6.18235 6.27317 6.39682 6.42226 6.57278 6.85346 6.92782 7.09821 7.16721 7.32151 7.39503 7.75398 7.85333 8.03263 8.20245 8.31976 8.45962 8.75246 8.98139 9.05960 9.11031 10.38889 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003026 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.476022 B = 9249.869052 C =10214.094071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C -0.143 4.143 4 C 0.140 3.860 5 N -0.627 5.627 6 C 0.705 3.295 7 O -0.564 6.564 8 N -0.682 5.682 9 C 0.164 3.836 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.160 4.160 13 C 0.121 3.879 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.812 5.812 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.199 4.199 23 C 0.122 3.878 24 C -0.073 4.073 25 C -0.146 4.146 26 C -0.144 4.144 27 C -0.089 4.089 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.392 0.608 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.276 0.724 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 9.587 -18.578 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 C -0.201 4.201 4 C 0.016 3.984 5 N -0.364 5.364 6 C 0.407 3.593 7 O -0.440 6.440 8 N -0.330 5.330 9 C 0.072 3.928 10 C -0.274 4.274 11 C -0.116 4.116 12 C -0.180 4.180 13 C 0.118 3.882 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.439 5.439 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.221 4.221 23 C -0.002 4.002 24 C -0.074 4.074 25 C -0.203 4.203 26 C -0.202 4.202 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.963 9.822 -17.789 20.917 hybrid contribution 0.333 -0.164 0.235 0.439 sum 5.296 9.657 -17.554 20.723 Atomic orbital electron populations 1.21976 0.93986 1.02469 1.01163 1.20755 0.96417 0.95176 0.95084 1.22233 1.00934 0.94915 1.02009 1.21369 1.00784 0.78408 0.97828 1.46984 1.56808 1.06967 1.25667 1.15810 0.79707 0.81787 0.81976 1.90962 1.46767 1.69253 1.36989 1.42771 1.60729 1.04262 1.25238 1.17254 0.97017 0.92079 0.86457 1.20057 1.10890 0.98961 0.97503 1.20471 0.99698 0.97860 0.93539 1.21352 1.02746 0.99409 0.94452 1.17507 0.87463 0.90795 0.92400 1.19557 1.45217 0.94386 0.90317 0.90523 1.25832 0.92579 0.94499 1.01309 1.69793 1.37696 1.02439 1.34002 0.86224 0.78330 0.80152 0.81735 1.18553 1.19954 1.20135 1.21112 1.07235 1.03069 0.90671 1.21571 0.96897 0.96529 0.85176 1.20744 0.96382 0.95476 0.94765 1.22050 0.96112 1.00662 1.01470 1.22248 0.98771 1.01352 0.97818 1.21242 1.01230 0.93257 0.96941 0.92516 0.93067 0.92036 0.92671 0.92550 0.92254 0.88687 0.92147 0.77224 0.89387 0.89017 0.86468 0.91301 0.87502 0.91555 0.90629 0.92717 0.92704 0.91719 0.92573 0.92348 0.92430 0.92132 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.88 37.23 0.29 -1.22 16 2 C -0.07 -0.71 0.77 -154.45 -0.12 -0.83 16 3 C -0.14 -1.14 8.03 37.93 0.30 -0.84 16 4 C 0.14 1.73 5.09 -4.13 -0.02 1.71 16 5 N -0.63 -8.69 2.91 -179.15 -0.52 -9.21 16 6 C 0.70 13.29 8.03 -86.90 -0.70 12.59 16 7 O -0.56 -13.18 13.57 5.29 0.07 -13.11 16 8 N -0.68 -12.73 5.25 -14.27 -0.07 -12.81 16 9 C 0.16 3.81 6.25 -83.76 -0.52 3.29 16 10 C -0.25 -5.64 9.97 -39.10 -0.39 -6.03 16 11 C -0.10 -2.29 10.02 -39.69 -0.40 -2.68 16 12 C -0.16 -4.27 8.62 -38.84 -0.33 -4.60 16 13 C 0.12 3.40 5.50 -106.85 -0.59 2.82 16 14 C -0.46 -13.08 9.04 -37.74 -0.34 -13.42 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.07 1.92 5.31 -17.35 -0.09 1.82 16 17 N -0.81 -21.80 10.97 55.55 0.61 -21.19 16 18 Si 0.91 19.78 29.56 -169.99 -5.03 14.76 16 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 22 C -0.20 -5.30 8.39 -38.69 -0.32 -5.62 16 23 C 0.12 1.27 5.05 -4.12 -0.02 1.25 16 24 C -0.07 -0.63 0.77 -154.45 -0.12 -0.74 16 25 C -0.15 -1.39 8.30 37.22 0.31 -1.08 16 26 C -0.14 -0.98 8.05 37.92 0.31 -0.67 16 27 C -0.09 -0.74 3.40 -28.00 -0.10 -0.84 16 28 H 0.06 0.64 8.07 -51.93 -0.42 0.23 16 29 H 0.05 0.48 7.98 -51.93 -0.41 0.06 16 30 H 0.06 0.81 5.85 -51.93 -0.30 0.51 16 31 H 0.05 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.09 1.41 6.91 -51.79 -0.36 1.05 16 35 H 0.06 0.67 8.01 -51.79 -0.42 0.25 16 36 H 0.39 5.89 6.31 -40.82 -0.26 5.63 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.22 6.48 -52.49 -0.34 2.88 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 41 H 0.11 2.96 6.51 -52.49 -0.34 2.62 16 42 H 0.07 0.62 8.04 -51.80 -0.42 0.20 16 43 H 0.08 0.76 5.40 -51.80 -0.28 0.48 16 44 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 45 H 0.05 0.52 7.97 -51.93 -0.41 0.10 16 46 H 0.06 0.75 5.28 -51.93 -0.27 0.48 16 47 H 0.06 0.35 8.05 -51.93 -0.42 -0.07 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.48 7.93 -51.19 -0.41 0.07 16 51 H 0.06 0.45 7.66 -51.18 -0.39 0.06 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -31.23 389.48 -10.29 -41.52 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.37 Total: 9.27 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.85 Total: -15.11 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.01 Total: -43.21 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.23 -10.29 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455912411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.412 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds