Wall clock time and date at job start Tue Mar 31 2020 16:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53131 * 1 3 3 C 1.54470 * 107.35295 * 2 1 4 4 C 1.52710 * 109.87729 * 116.77378 * 2 1 3 5 5 N 1.46614 * 109.85984 * 77.51388 * 4 2 1 6 6 C 1.34796 * 120.99449 * 235.43360 * 5 4 2 7 7 O 1.21586 * 119.99842 * 5.39813 * 6 5 4 8 8 N 1.34774 * 120.00053 * 185.38891 * 6 5 4 9 9 C 1.39954 * 120.00176 * 174.22704 * 8 6 5 10 10 C 1.39290 * 119.94450 * 145.46923 * 9 8 6 11 11 C 1.38490 * 120.42810 * 180.02562 * 10 9 8 12 12 C 1.37686 * 120.32050 * 0.25051 * 11 10 9 13 13 C 1.40743 * 119.88035 * 359.43310 * 12 11 10 14 14 C 1.41412 * 120.20564 * 180.31057 * 13 12 11 15 15 H 1.07996 * 119.99699 * 214.37892 * 14 13 12 16 16 C 1.39930 * 120.00095 * 34.39024 * 14 13 12 17 17 N 1.30828 * 119.99731 * 5.58463 * 16 14 13 18 18 Si 1.86800 * 119.99973 * 185.58760 * 16 14 13 19 19 H 1.48491 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46885 * 119.99650 * 18 16 14 21 21 H 1.48500 * 109.47186 * 239.99552 * 18 16 14 22 22 C 1.38226 * 119.94676 * 325.45320 * 9 8 6 23 23 C 1.46616 * 118.01472 * 56.12691 * 5 4 2 24 24 C 1.52730 * 109.78222 * 303.71856 * 23 5 4 25 25 C 1.53125 * 109.87971 * 282.82721 * 24 23 5 26 26 C 1.54456 * 107.65554 * 166.20342 * 24 23 5 27 27 C 1.51748 * 111.25985 * 242.01535 * 2 1 3 28 28 H 1.08996 * 109.47148 * 308.84535 * 1 2 3 29 29 H 1.09007 * 109.46652 * 68.84314 * 1 2 3 30 30 H 1.08997 * 109.47444 * 188.83994 * 1 2 3 31 31 H 1.08998 * 109.47310 * 178.23297 * 3 2 1 32 32 H 1.08999 * 109.46710 * 298.23470 * 3 2 1 33 33 H 1.08992 * 109.47049 * 58.23069 * 3 2 1 34 34 H 1.09254 * 109.57927 * 317.23862 * 4 2 1 35 35 H 1.09245 * 109.60296 * 197.83935 * 4 2 1 36 36 H 0.97002 * 119.99761 * 354.23712 * 8 6 5 37 37 H 1.08002 * 119.78290 * 359.97438 * 10 9 8 38 38 H 1.07993 * 119.83633 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.05598 * 179.70618 * 12 11 10 40 40 H 0.97005 * 120.00006 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.16485 * 359.96661 * 22 9 8 42 42 H 1.09231 * 109.47182 * 64.05491 * 23 5 4 43 43 H 1.09231 * 109.47493 * 183.37084 * 23 5 4 44 44 H 1.09000 * 109.47294 * 189.81689 * 25 24 23 45 45 H 1.09006 * 109.47087 * 309.81866 * 25 24 23 46 46 H 1.09004 * 109.47030 * 69.81619 * 25 24 23 47 47 H 1.08999 * 109.46847 * 298.35800 * 26 24 23 48 48 H 1.08999 * 109.47147 * 58.35616 * 26 24 23 49 49 H 1.08998 * 109.47261 * 178.35718 * 26 24 23 50 50 H 1.10287 * 108.55942 * 43.70688 * 27 2 1 51 51 H 1.10308 * 108.52311 * 158.32291 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5313 0.0000 0.0000 3 6 1.9920 1.4744 0.0000 4 6 2.0505 -0.6469 1.2822 5 7 1.9395 -2.1056 1.1844 6 6 1.2682 -2.8145 2.1138 7 8 0.6611 -2.2389 2.9960 8 7 1.2698 -4.1614 2.0649 9 6 0.6761 -4.8997 3.0950 10 6 0.0298 -6.0995 2.8072 11 6 -0.5615 -6.8379 3.8186 12 6 -0.5214 -6.3908 5.1202 13 6 0.1338 -5.1835 5.4270 14 6 0.1848 -4.7211 6.7624 15 1 0.1525 -3.6615 6.9685 16 6 0.2775 -5.6365 7.8167 17 7 0.4269 -6.9116 7.5647 18 14 0.1877 -5.0379 9.5840 19 1 0.0187 -3.5627 9.5989 20 1 -0.9677 -5.6760 10.2646 21 1 1.4413 -5.3993 10.2933 22 6 0.7322 -4.4371 4.3964 23 6 2.5936 -2.7718 0.0539 24 6 2.0843 -2.1811 -1.2593 25 6 0.6928 -2.7368 -1.5752 26 6 3.0341 -2.6499 -2.3834 27 6 2.0815 -0.6636 -1.2489 28 1 -0.3633 0.6445 0.8004 29 1 -0.3633 0.3709 -0.9585 30 1 -0.3634 -1.0154 0.1579 31 1 3.0808 1.5149 0.0317 32 1 1.6363 1.9661 -0.9054 33 1 1.5840 1.9825 0.8736 34 1 1.4643 -0.2938 2.1338 35 1 3.0964 -0.3707 1.4345 36 1 1.6826 -4.6190 1.3159 37 1 -0.0110 -6.4559 1.7885 38 1 -1.0604 -7.7667 3.5846 39 1 -0.9881 -6.9676 5.9050 40 1 0.4908 -7.5462 8.2956 41 1 1.2337 -3.5073 4.6207 42 1 3.6745 -2.6308 0.1240 43 1 2.3733 -3.8412 0.0843 44 1 0.4093 -2.4521 -2.5885 45 1 0.7087 -3.8238 -1.4942 46 1 -0.0300 -2.3303 -0.8678 47 1 4.0387 -2.2734 -2.1908 48 1 3.0537 -3.7394 -2.4117 49 1 2.6802 -2.2679 -3.3410 50 1 1.5045 -0.3077 -2.1187 51 1 3.1144 -0.3103 -1.4073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455912411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:45 Heat of formation + Delta-G solvation = -35.645059 kcal Electronic energy + Delta-G solvation = -29427.534716 eV Core-core repulsion = 25711.250354 eV Total energy + Delta-G solvation = -3716.284363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97732 -40.19539 -38.83720 -36.46886 -35.86539 -35.21976 -34.56480 -31.72313 -30.04356 -28.77266 -27.74913 -27.52279 -27.45249 -27.25366 -26.53062 -23.18610 -22.72786 -21.15737 -20.89798 -19.75575 -19.16512 -18.72142 -17.53234 -17.15100 -16.57978 -16.42211 -16.19572 -15.74684 -15.58859 -15.34759 -15.23367 -14.92963 -14.70534 -14.48093 -14.25267 -13.96540 -13.57077 -13.26117 -13.07511 -13.05717 -12.99135 -12.95165 -12.88196 -12.83950 -12.81264 -12.65069 -12.45499 -12.17868 -12.00930 -11.89916 -11.79955 -11.64273 -11.49412 -11.27284 -11.20395 -11.04411 -10.98558 -10.74319 -9.58014 -9.30786 -8.69661 -8.50652 -6.39467 0.92461 1.01761 1.35975 1.46020 1.51501 1.62991 2.17596 2.23541 2.79642 2.93164 3.55565 3.69891 3.76538 3.79454 3.89694 4.02125 4.18519 4.29154 4.44943 4.49229 4.59107 4.60650 4.66844 4.70595 4.72612 4.82388 4.87218 4.89296 4.90948 4.99515 5.03857 5.04842 5.09019 5.10039 5.13178 5.13900 5.16305 5.28119 5.32090 5.33212 5.37568 5.43937 5.46728 5.51678 5.62310 5.76415 5.84020 6.03241 6.09197 6.15445 6.39064 6.70352 6.95134 6.96923 7.02483 7.58552 8.42519 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003026 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.476022 B = 9249.869052 C =10214.094071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.138 4.138 4 C 0.134 3.866 5 N -0.614 5.614 6 C 0.699 3.301 7 O -0.619 6.619 8 N -0.671 5.671 9 C 0.172 3.828 10 C -0.240 4.240 11 C -0.093 4.093 12 C -0.184 4.184 13 C 0.091 3.909 14 C -0.508 4.508 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.837 5.837 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.259 1.259 21 H -0.263 1.263 22 C -0.225 4.225 23 C 0.113 3.887 24 C -0.069 4.069 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.089 4.089 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.286 0.714 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.038 0.962 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 9.394 -21.526 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.196 4.196 4 C 0.011 3.989 5 N -0.350 5.350 6 C 0.401 3.599 7 O -0.498 6.498 8 N -0.322 5.322 9 C 0.078 3.922 10 C -0.261 4.261 11 C -0.112 4.112 12 C -0.204 4.204 13 C 0.088 3.912 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.178 4.178 17 N -0.465 5.465 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.183 1.183 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.010 4.010 24 C -0.070 4.070 25 C -0.203 4.203 26 C -0.195 4.195 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.367 9.628 -20.829 23.813 hybrid contribution -0.077 -0.079 0.970 0.976 sum 6.290 9.549 -19.859 22.915 Atomic orbital electron populations 1.21955 0.95269 1.00518 1.01582 1.20717 0.95273 0.96435 0.94382 1.22196 1.01763 0.93279 1.02377 1.21551 1.01355 0.77568 0.98378 1.47001 1.55224 1.07480 1.25289 1.16041 0.79789 0.81768 0.82264 1.90933 1.49168 1.70204 1.39507 1.42536 1.60552 1.04280 1.24804 1.17322 0.96118 0.92466 0.86289 1.20482 1.08607 0.97767 0.99267 1.20849 0.98943 0.98932 0.92429 1.21296 1.04031 0.99362 0.95728 1.17816 0.88415 0.91993 0.92935 1.19693 1.48338 0.94056 0.91826 0.92323 1.26634 0.91447 0.94442 1.05289 1.69834 1.37594 1.03332 1.35735 0.85144 0.79185 0.79153 0.76053 1.19161 1.18348 1.18734 1.21033 1.08680 1.02544 0.92477 1.21949 0.97777 0.96616 0.84614 1.20721 0.96301 0.95673 0.94269 1.22057 0.96116 1.00547 1.01581 1.22193 0.98585 1.01657 0.97109 1.21245 1.02467 0.92868 0.96097 0.94000 0.91153 0.94703 0.91311 0.91009 0.93212 0.92193 0.90296 0.74806 0.85013 0.85595 0.87995 0.90349 0.90069 0.89515 0.90288 0.91270 0.92763 0.94318 0.91538 0.91997 0.91434 0.90850 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.88 72.03 0.57 -2.41 16 2 C -0.07 -1.21 0.77 -52.15 -0.04 -1.25 16 3 C -0.14 -1.92 8.03 72.48 0.58 -1.34 16 4 C 0.13 3.33 5.09 86.26 0.44 3.77 16 5 N -0.61 -16.86 2.91 -838.97 -2.44 -19.31 16 6 C 0.70 27.17 8.03 179.05 1.44 28.61 16 7 O -0.62 -30.94 13.57 -3.99 -0.05 -31.00 16 8 N -0.67 -24.98 5.25 -317.32 -1.67 -26.64 16 9 C 0.17 8.07 6.25 38.09 0.24 8.30 16 10 C -0.24 -10.31 9.97 22.58 0.23 -10.08 16 11 C -0.09 -4.31 10.02 22.20 0.22 -4.09 16 12 C -0.18 -10.16 8.62 22.75 0.20 -9.96 16 13 C 0.09 5.41 5.50 -21.31 -0.12 5.29 16 14 C -0.51 -30.61 9.04 23.46 0.21 -30.40 16 15 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 16 C 0.03 1.87 5.31 85.25 0.45 2.33 16 17 N -0.84 -46.24 10.97 21.82 0.24 -46.00 16 18 Si 0.98 41.82 29.56 68.60 2.03 43.85 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.23 -12.69 8.39 22.85 0.19 -12.50 16 23 C 0.11 2.08 5.05 86.27 0.44 2.51 16 24 C -0.07 -0.97 0.77 -52.14 -0.04 -1.01 16 25 C -0.15 -2.45 8.30 72.02 0.60 -1.85 16 26 C -0.14 -1.28 8.05 72.48 0.58 -0.69 16 27 C -0.09 -1.19 3.40 29.77 0.10 -1.09 16 28 H 0.04 1.01 8.07 -2.39 -0.02 0.99 16 29 H 0.07 1.23 7.98 -2.38 -0.02 1.21 16 30 H 0.03 0.95 5.85 -2.39 -0.01 0.93 16 31 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 34 H 0.06 1.92 6.91 -2.25 -0.02 1.91 16 35 H 0.08 1.66 8.01 -2.26 -0.02 1.64 16 36 H 0.41 11.65 6.31 -92.71 -0.59 11.07 16 37 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 39 H 0.10 5.84 6.48 -2.91 -0.02 5.82 16 40 H 0.29 14.19 8.30 -92.70 -0.77 13.42 16 41 H 0.08 4.89 6.51 -2.91 -0.02 4.87 16 42 H 0.09 1.31 8.04 -2.26 -0.02 1.30 16 43 H 0.08 1.39 5.40 -2.26 -0.01 1.38 16 44 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 45 H 0.05 0.90 7.97 -2.38 -0.02 0.88 16 46 H 0.04 0.86 5.28 -2.38 -0.01 0.85 16 47 H 0.07 0.52 8.05 -2.39 -0.02 0.50 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.07 0.86 7.93 -1.70 -0.01 0.85 16 51 H 0.08 0.81 7.66 -1.69 -0.01 0.80 16 Total: -1.00 -74.27 389.48 4.74 -69.53 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.35 Total: 35.44 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 6.28 Total: -25.88 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -3.87 Total: -91.95 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -31.00 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -74.27 4.74 -69.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455912411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.887 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds