Wall clock time and date at job start Tue Mar 31 2020 16:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55095 * 2 1 4 4 C 1.53007 * 117.50098 * 145.66306 * 2 1 3 5 5 H 1.08992 * 117.49995 * 214.99825 * 4 2 1 6 6 C 1.52998 * 117.49706 * 0.02562 * 4 2 1 7 7 N 1.46497 * 109.47083 * 184.91065 * 6 4 2 8 8 C 1.34776 * 120.00014 * 179.97438 * 7 6 4 9 9 O 1.21585 * 120.00004 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99948 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46954 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 C 1.53002 * 60.02798 * 107.50294 * 4 2 1 23 23 H 1.09006 * 117.50295 * 252.49968 * 22 4 2 24 24 C 1.50707 * 117.49796 * 107.48054 * 22 4 2 25 25 C 1.38234 * 119.99719 * 351.11551 * 24 22 4 26 26 C 1.38239 * 119.99423 * 179.76537 * 25 24 22 27 27 C 1.38232 * 120.00178 * 0.50862 * 26 25 24 28 28 C 1.38229 * 119.99829 * 359.74684 * 27 26 25 29 29 C 1.38231 * 120.00316 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46832 * 274.32869 * 1 2 3 31 31 H 1.08998 * 109.47620 * 34.32939 * 1 2 3 32 32 H 1.09000 * 109.47240 * 154.33501 * 1 2 3 33 33 H 1.09003 * 109.47461 * 205.67065 * 3 2 1 34 34 H 1.09010 * 109.46968 * 325.66626 * 3 2 1 35 35 H 1.08995 * 109.47612 * 85.66624 * 3 2 1 36 36 H 1.08999 * 109.47368 * 64.90765 * 6 4 2 37 37 H 1.09006 * 109.46743 * 304.90741 * 6 4 2 38 38 H 0.96998 * 120.00044 * 359.97438 * 7 6 4 39 39 H 0.96998 * 120.00150 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46635 * 60.00517 * 11 10 8 41 41 H 1.08994 * 109.47340 * 300.00676 * 11 10 8 42 42 H 1.09000 * 109.47441 * 60.00504 * 12 11 10 43 43 H 1.09002 * 109.47087 * 299.99950 * 12 11 10 44 44 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 45 45 H 1.08998 * 109.47454 * 300.00107 * 13 12 11 46 46 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 47 47 H 1.07993 * 119.99932 * 0.02562 * 25 24 22 48 48 H 1.07999 * 119.99777 * 180.23268 * 26 25 24 49 49 H 1.08003 * 120.00028 * 179.72303 * 27 26 25 50 50 H 1.08006 * 120.00012 * 179.97438 * 28 27 26 51 51 H 1.08004 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7655 5 1 3.1713 -0.8745 1.2689 6 6 1.3589 -2.1559 1.4719 7 7 2.2060 -3.0712 2.2405 8 6 1.6469 -4.0718 2.9496 9 8 0.4395 -4.2150 2.9510 10 7 2.4262 -4.9142 3.6562 11 6 1.8184 -6.0015 4.4275 12 6 2.9155 -6.8026 5.1313 13 6 2.2808 -7.9385 5.9362 14 6 3.3614 -8.7280 6.6291 15 1 4.3973 -8.4479 6.5071 16 6 3.0273 -9.8048 7.4228 17 7 1.7655 -10.1425 7.5756 18 14 4.3667 -10.7830 8.2822 19 1 5.6930 -10.2033 7.9506 20 1 4.1550 -10.7279 9.7509 21 1 4.3168 -12.1958 7.8275 22 6 2.2371 -1.1218 -0.7645 23 1 1.6123 -1.8599 -1.2676 24 6 3.5302 -0.7821 -1.4601 25 6 4.6038 -0.3076 -0.7299 26 6 5.7914 -0.0006 -1.3673 27 6 5.9020 -0.1580 -2.7362 28 6 4.8266 -0.6274 -3.4670 29 6 3.6409 -0.9399 -2.8289 30 1 -0.3633 0.0776 1.0248 31 1 -0.3634 0.8486 -0.5795 32 1 -0.3634 -0.9263 -0.4451 33 1 3.1823 1.3087 -0.4452 34 1 1.5809 2.0742 -0.5797 35 1 2.2765 1.7417 1.0246 36 1 0.7938 -2.7201 0.7301 37 1 0.6684 -1.6479 2.1453 38 1 3.1692 -2.9572 2.2391 39 1 3.3895 -4.8002 3.6548 40 1 1.2634 -6.6568 3.7562 41 1 1.1397 -5.5842 5.1712 42 1 3.4702 -6.1471 5.8027 43 1 3.5945 -7.2200 4.3878 44 1 1.7263 -8.5940 5.2647 45 1 1.6015 -7.5215 6.6797 46 1 1.5303 -10.8999 8.1342 47 1 4.5160 -0.1809 0.3390 48 1 6.6314 0.3665 -0.7964 49 1 6.8284 0.0861 -3.2347 50 1 4.9129 -0.7500 -4.5366 51 1 2.8006 -1.3063 -3.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458294049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:34 Heat of formation + Delta-G solvation = -5.560342 kcal Electronic energy + Delta-G solvation = -26774.421377 eV Core-core repulsion = 23059.441585 eV Total energy + Delta-G solvation = -3714.979792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72218 -39.66184 -38.27365 -35.51501 -34.37687 -33.25492 -31.73269 -31.32178 -31.18898 -29.64720 -27.82326 -27.12692 -25.84976 -23.52305 -22.92033 -22.60394 -20.87541 -20.56433 -20.28051 -19.24152 -17.84938 -17.25467 -16.55197 -16.08234 -15.73705 -15.54464 -15.40266 -14.74164 -14.65686 -14.44032 -14.35023 -14.20722 -13.87796 -13.76426 -13.71392 -13.33707 -12.98417 -12.84827 -12.66129 -12.42554 -12.27484 -12.10114 -11.78259 -11.67639 -11.59744 -11.33907 -11.19200 -10.91171 -10.70481 -10.56847 -10.55377 -10.23186 -9.97267 -9.83935 -9.42363 -9.25803 -9.16043 -9.09396 -8.84704 -8.54959 -8.36122 -6.00530 -4.03459 0.93935 1.02495 2.78152 3.15092 3.30704 3.38130 3.41237 3.41717 3.60060 3.98482 4.27907 4.30640 4.44945 4.48775 4.53408 4.62244 4.64103 4.72452 4.77690 4.94215 5.09047 5.15790 5.21595 5.28021 5.35246 5.43259 5.51370 5.53019 5.57660 5.60703 5.62372 5.68361 5.72977 5.78316 5.80699 5.84593 5.97482 6.11029 6.15554 6.21436 6.26061 6.48235 6.56387 6.62212 6.65224 6.83963 7.04945 7.11139 7.65923 7.78739 7.98689 8.18900 8.39665 8.79231 9.03492 9.60609 11.10777 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.001751 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.818648 B =15991.390818 C =17193.220320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.152 4.152 5 H 0.114 0.886 6 C 0.173 3.827 7 N -0.750 5.750 8 C 0.700 3.300 9 O -0.594 6.594 10 N -0.742 5.742 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.107 4.107 23 H 0.116 0.884 24 C -0.045 4.045 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.393 0.607 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.260 0.740 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.079 26.542 -22.138 34.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 C -0.185 4.185 4 C -0.171 4.171 5 H 0.131 0.869 6 C 0.049 3.951 7 N -0.407 5.407 8 C 0.400 3.600 9 O -0.472 6.472 10 N -0.396 5.396 11 C 0.012 3.988 12 C -0.158 4.158 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.125 4.125 23 H 0.134 0.866 24 C -0.045 4.045 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.136 4.136 29 C -0.132 4.132 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.228 0.772 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.806 26.260 -22.034 34.490 hybrid contribution 1.687 -0.582 0.480 1.847 sum 5.492 25.678 -21.554 33.972 Atomic orbital electron populations 1.21412 0.91408 1.02409 1.02526 1.21688 0.95017 0.91066 1.02024 1.21556 1.01163 0.93613 1.02127 1.22830 1.01493 0.99703 0.93048 0.86858 1.20615 0.91633 0.88780 0.94098 1.45087 1.09969 1.32468 1.53125 1.16003 0.85617 0.79537 0.78890 1.90917 1.12628 1.75154 1.68541 1.45383 1.09549 1.32610 1.52074 1.21503 0.96747 0.86653 0.93909 1.21887 0.96809 0.98347 0.98780 1.19039 0.96190 0.91652 0.94582 1.21245 0.93247 1.12853 1.28592 0.92607 1.25037 0.95380 0.97450 0.96690 1.69979 1.16214 1.27826 1.39226 0.86525 0.82090 0.79948 0.79353 1.19781 1.21018 1.21018 1.21588 0.96194 1.01828 0.92917 0.86634 1.19099 0.93688 0.98283 0.93401 1.21061 0.92870 0.99780 0.99983 1.21145 0.97539 1.00101 0.94816 1.21157 0.98803 1.00128 0.94346 1.21143 0.93278 0.99209 0.99925 1.20975 0.97912 1.00423 0.93842 0.91527 0.91876 0.91971 0.91211 0.92012 0.92002 0.91521 0.91110 0.77230 0.77350 0.91984 0.91981 0.92784 0.92785 0.96236 0.96209 0.93000 0.85937 0.86058 0.86201 0.86085 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 8.86 37.16 0.33 -0.45 16 2 C -0.10 -0.65 2.70 -154.47 -0.42 -1.07 16 3 C -0.13 -0.78 9.49 37.16 0.35 -0.43 16 4 C -0.15 -1.11 4.90 -90.62 -0.44 -1.55 16 5 H 0.11 0.74 6.08 -51.93 -0.32 0.42 16 6 C 0.17 1.71 5.03 -4.04 -0.02 1.69 16 7 N -0.75 -8.31 5.56 -65.23 -0.36 -8.67 16 8 C 0.70 10.95 8.57 -86.92 -0.74 10.21 16 9 O -0.59 -11.90 16.34 5.29 0.09 -11.82 16 10 N -0.74 -11.03 5.56 -65.23 -0.36 -11.40 16 11 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 12 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.11 -0.78 5.34 -91.73 -0.49 -1.27 16 23 H 0.12 0.86 7.94 -51.93 -0.41 0.44 16 24 C -0.04 -0.34 4.85 -104.62 -0.51 -0.84 16 25 C -0.12 -0.84 7.07 -39.58 -0.28 -1.12 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.13 -0.84 10.05 -39.59 -0.40 -1.23 16 28 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 29 C -0.11 -0.83 9.74 -39.59 -0.39 -1.22 16 30 H 0.07 0.44 7.84 -51.93 -0.41 0.04 16 31 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 32 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 33 H 0.07 0.45 4.68 -51.93 -0.24 0.21 16 34 H 0.06 0.35 7.92 -51.92 -0.41 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 37 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 38 H 0.39 3.27 8.42 -40.82 -0.34 2.93 16 39 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.12 0.74 5.89 -52.49 -0.31 0.43 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 49 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 50 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 51 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 412.78 15.07 6.22 6.22 Total: -1.00 -33.84 412.78 -11.83 -45.67 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.62 Total: 2.42 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -4.51 Total: -12.77 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.01 Total: -46.30 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.84 -11.83 -45.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458294049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.107 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds