Wall clock time and date at job start Tue Mar 31 2020 16:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55095 * 2 1 4 4 C 1.53007 * 117.50098 * 145.66306 * 2 1 3 5 5 H 1.08992 * 117.49995 * 214.99825 * 4 2 1 6 6 C 1.52998 * 117.49706 * 0.02562 * 4 2 1 7 7 N 1.46497 * 109.47083 * 184.91065 * 6 4 2 8 8 C 1.34776 * 120.00014 * 179.97438 * 7 6 4 9 9 O 1.21585 * 120.00004 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99902 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99948 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46954 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46683 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47426 * 119.99743 * 18 16 14 21 21 H 1.48501 * 109.46833 * 239.99986 * 18 16 14 22 22 C 1.53002 * 60.02798 * 107.50294 * 4 2 1 23 23 H 1.09006 * 117.50295 * 252.49968 * 22 4 2 24 24 C 1.50707 * 117.49796 * 107.48054 * 22 4 2 25 25 C 1.38234 * 119.99719 * 351.11551 * 24 22 4 26 26 C 1.38239 * 119.99423 * 179.76537 * 25 24 22 27 27 C 1.38232 * 120.00178 * 0.50862 * 26 25 24 28 28 C 1.38229 * 119.99829 * 359.74684 * 27 26 25 29 29 C 1.38231 * 120.00316 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46832 * 274.32869 * 1 2 3 31 31 H 1.08998 * 109.47620 * 34.32939 * 1 2 3 32 32 H 1.09000 * 109.47240 * 154.33501 * 1 2 3 33 33 H 1.09003 * 109.47461 * 205.67065 * 3 2 1 34 34 H 1.09010 * 109.46968 * 325.66626 * 3 2 1 35 35 H 1.08995 * 109.47612 * 85.66624 * 3 2 1 36 36 H 1.08999 * 109.47368 * 64.90765 * 6 4 2 37 37 H 1.09006 * 109.46743 * 304.90741 * 6 4 2 38 38 H 0.96998 * 120.00044 * 359.97438 * 7 6 4 39 39 H 0.96998 * 120.00150 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.46635 * 60.00517 * 11 10 8 41 41 H 1.08994 * 109.47340 * 300.00676 * 11 10 8 42 42 H 1.09000 * 109.47441 * 60.00504 * 12 11 10 43 43 H 1.09002 * 109.47087 * 299.99950 * 12 11 10 44 44 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 45 45 H 1.08998 * 109.47454 * 300.00107 * 13 12 11 46 46 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 47 47 H 1.07993 * 119.99932 * 0.02562 * 25 24 22 48 48 H 1.07999 * 119.99777 * 180.23268 * 26 25 24 49 49 H 1.08003 * 120.00028 * 179.72303 * 27 26 25 50 50 H 1.08006 * 120.00012 * 179.97438 * 28 27 26 51 51 H 1.08004 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7655 5 1 3.1713 -0.8745 1.2689 6 6 1.3589 -2.1559 1.4719 7 7 2.2060 -3.0712 2.2405 8 6 1.6469 -4.0718 2.9496 9 8 0.4395 -4.2150 2.9510 10 7 2.4262 -4.9142 3.6562 11 6 1.8184 -6.0015 4.4275 12 6 2.9155 -6.8026 5.1313 13 6 2.2808 -7.9385 5.9362 14 6 3.3614 -8.7280 6.6291 15 1 4.3973 -8.4479 6.5071 16 6 3.0273 -9.8048 7.4228 17 7 1.7655 -10.1425 7.5756 18 14 4.3667 -10.7830 8.2822 19 1 5.6930 -10.2033 7.9506 20 1 4.1550 -10.7279 9.7509 21 1 4.3168 -12.1958 7.8275 22 6 2.2371 -1.1218 -0.7645 23 1 1.6123 -1.8599 -1.2676 24 6 3.5302 -0.7821 -1.4601 25 6 4.6038 -0.3076 -0.7299 26 6 5.7914 -0.0006 -1.3673 27 6 5.9020 -0.1580 -2.7362 28 6 4.8266 -0.6274 -3.4670 29 6 3.6409 -0.9399 -2.8289 30 1 -0.3633 0.0776 1.0248 31 1 -0.3634 0.8486 -0.5795 32 1 -0.3634 -0.9263 -0.4451 33 1 3.1823 1.3087 -0.4452 34 1 1.5809 2.0742 -0.5797 35 1 2.2765 1.7417 1.0246 36 1 0.7938 -2.7201 0.7301 37 1 0.6684 -1.6479 2.1453 38 1 3.1692 -2.9572 2.2391 39 1 3.3895 -4.8002 3.6548 40 1 1.2634 -6.6568 3.7562 41 1 1.1397 -5.5842 5.1712 42 1 3.4702 -6.1471 5.8027 43 1 3.5945 -7.2200 4.3878 44 1 1.7263 -8.5940 5.2647 45 1 1.6015 -7.5215 6.6797 46 1 1.5303 -10.8999 8.1342 47 1 4.5160 -0.1809 0.3390 48 1 6.6314 0.3665 -0.7964 49 1 6.8284 0.0861 -3.2347 50 1 4.9129 -0.7500 -4.5366 51 1 2.8006 -1.3063 -3.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458294049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:33 Heat of formation + Delta-G solvation = -24.916753 kcal Electronic energy + Delta-G solvation = -26775.260733 eV Core-core repulsion = 23059.441585 eV Total energy + Delta-G solvation = -3715.819148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39256 -40.77242 -38.84987 -37.04010 -35.51106 -35.16521 -32.97694 -32.22037 -31.79565 -30.42637 -28.63865 -28.31670 -26.99619 -24.84651 -23.89705 -23.19621 -22.30125 -21.89418 -21.10590 -19.94537 -18.90784 -18.52754 -17.83266 -17.25719 -16.89921 -16.50639 -16.24178 -16.04696 -15.74442 -15.55907 -15.32873 -15.06910 -14.75734 -14.60277 -14.31431 -14.25085 -14.19702 -13.71644 -13.63775 -13.46705 -13.36919 -13.16234 -12.92788 -12.77083 -12.65365 -12.53800 -12.32932 -12.13588 -11.83724 -11.72926 -11.66625 -11.66003 -11.33522 -11.16316 -11.12829 -10.66639 -10.55433 -10.34974 -9.75171 -9.75129 -9.36084 -8.18823 -6.30203 0.43664 0.53082 1.42118 1.42327 1.55530 1.68431 2.14295 2.42392 2.58573 3.03427 3.14894 3.29922 3.46036 3.70137 3.85961 3.97601 4.09403 4.16540 4.17999 4.22371 4.24405 4.27405 4.36771 4.51371 4.57434 4.63465 4.69194 4.74256 4.81166 4.82863 4.97129 4.99883 5.03554 5.06055 5.07455 5.10672 5.17894 5.18951 5.20259 5.29290 5.45057 5.47439 5.52047 5.55805 5.62492 5.67432 5.72250 5.74838 5.85321 6.01347 6.14869 6.23539 6.87306 7.11630 7.39260 7.58115 8.93488 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.001751 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.818648 B =15991.390818 C =17193.220320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.148 4.148 5 H 0.127 0.873 6 C 0.175 3.825 7 N -0.729 5.729 8 C 0.697 3.303 9 O -0.641 6.641 10 N -0.730 5.730 11 C 0.150 3.850 12 C -0.100 4.100 13 C 0.022 3.978 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.107 4.107 23 H 0.110 0.890 24 C -0.055 4.055 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.127 4.127 29 C -0.129 4.129 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.412 0.588 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.067 0.933 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.263 0.737 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 27.788 -22.638 36.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.092 4.092 3 C -0.182 4.182 4 C -0.166 4.166 5 H 0.145 0.855 6 C 0.051 3.949 7 N -0.386 5.386 8 C 0.396 3.604 9 O -0.523 6.523 10 N -0.386 5.386 11 C 0.025 3.975 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.125 4.125 23 H 0.128 0.872 24 C -0.055 4.055 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.147 4.147 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.072 0.928 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.153 0.847 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.510 27.551 -22.563 36.201 hybrid contribution 0.833 -0.926 0.574 1.372 sum 7.343 26.625 -21.989 35.303 Atomic orbital electron populations 1.21431 0.91413 1.02617 1.02462 1.21743 0.95056 0.91288 1.01118 1.21549 1.01029 0.93090 1.02556 1.22711 1.01601 0.99284 0.92991 0.85533 1.20633 0.91905 0.88822 0.93568 1.44920 1.11036 1.30988 1.51638 1.16168 0.84980 0.80155 0.79074 1.90890 1.14860 1.76445 1.70132 1.45022 1.10413 1.31640 1.51508 1.21071 0.95932 0.87095 0.93413 1.21584 0.96867 0.96713 0.98627 1.18958 0.95505 0.93013 0.94071 1.21710 0.94165 1.13202 1.28634 0.91491 1.26042 0.97844 0.98804 0.97592 1.70123 1.18613 1.28594 1.40203 0.85349 0.79335 0.78119 0.77926 1.18167 1.20588 1.20628 1.21555 0.96335 1.01986 0.92628 0.87190 1.19174 0.93857 0.98857 0.93621 1.21211 0.92879 0.99739 1.00504 1.21418 0.97966 0.99875 0.95140 1.21446 0.99440 0.99778 0.94587 1.21394 0.93174 0.99021 1.00852 1.21170 0.98524 1.00862 0.94099 0.91842 0.90901 0.92474 0.91357 0.91611 0.91430 0.92708 0.91991 0.75186 0.75176 0.93617 0.93515 0.91293 0.91388 0.98953 0.98882 0.92841 0.85015 0.84476 0.84575 0.84667 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.86 71.98 0.64 -0.86 16 2 C -0.09 -1.12 2.70 -52.16 -0.14 -1.26 16 3 C -0.13 -1.32 9.49 71.98 0.68 -0.64 16 4 C -0.15 -1.94 4.90 -10.79 -0.05 -2.00 16 5 H 0.13 1.35 6.08 -2.39 -0.01 1.34 16 6 C 0.17 3.35 5.03 86.38 0.43 3.78 16 7 N -0.73 -15.17 5.56 -478.54 -2.66 -17.84 16 8 C 0.70 21.37 8.57 179.05 1.53 22.91 16 9 O -0.64 -26.09 16.34 -3.99 -0.07 -26.15 16 10 N -0.73 -20.84 5.56 -478.54 -2.66 -23.50 16 11 C 0.15 5.46 5.67 86.38 0.49 5.95 16 12 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 13 C 0.02 1.17 4.97 29.85 0.15 1.32 16 14 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 17 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 18 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.11 -1.45 5.34 -11.51 -0.06 -1.51 16 23 H 0.11 1.60 7.94 -2.38 -0.02 1.58 16 24 C -0.06 -0.76 4.85 -19.86 -0.10 -0.86 16 25 C -0.13 -1.55 7.07 22.27 0.16 -1.39 16 26 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 27 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 28 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 29 C -0.13 -1.77 9.74 22.27 0.22 -1.56 16 30 H 0.06 0.82 7.84 -2.38 -0.02 0.80 16 31 H 0.07 0.74 7.92 -2.39 -0.02 0.72 16 32 H 0.06 0.75 7.90 -2.39 -0.02 0.73 16 33 H 0.07 0.76 4.68 -2.39 -0.01 0.75 16 34 H 0.06 0.64 7.92 -2.38 -0.02 0.62 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 1.20 7.87 -2.39 -0.02 1.18 16 37 H 0.06 1.33 7.77 -2.38 -0.02 1.31 16 38 H 0.41 5.83 8.42 -92.71 -0.78 5.05 16 39 H 0.41 8.72 8.49 -92.71 -0.79 7.94 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.13 1.29 5.89 -2.91 -0.02 1.27 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 50 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 51 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.74 412.78 1.76 -71.98 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.64 Total: 20.23 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.48 Total: -13.57 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -5.04 Total: -98.51 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.15 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.74 1.76 -71.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458294049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.061 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds