Wall clock time and date at job start Tue Mar 31 2020 16:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46501 * 110.01654 * 304.10568 * 3 2 1 5 5 C 1.34780 * 119.99939 * 300.93955 * 4 3 2 6 6 O 1.21583 * 119.99928 * 354.97698 * 5 4 3 7 7 N 1.34780 * 119.99868 * 174.97588 * 5 4 3 8 8 C 1.46501 * 119.99865 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46785 * 35.00234 * 8 7 5 10 10 C 1.52997 * 109.46943 * 155.00079 * 8 7 5 11 11 C 1.50698 * 109.47533 * 294.99996 * 10 8 7 12 12 H 1.08005 * 119.99456 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00378 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47051 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47226 * 119.99889 * 15 13 11 18 18 H 1.48506 * 109.47081 * 240.00174 * 15 13 11 19 19 C 1.50704 * 109.47161 * 275.00386 * 8 7 5 20 20 C 1.38228 * 119.99817 * 319.72538 * 19 8 7 21 21 C 1.38240 * 119.99764 * 179.79020 * 20 19 8 22 22 C 1.38238 * 120.00048 * 0.43940 * 21 20 19 23 23 C 1.38237 * 119.99470 * 359.81534 * 22 21 20 24 24 C 1.38228 * 120.00301 * 359.97438 * 23 22 21 25 25 C 1.54269 * 110.03343 * 182.67007 * 3 2 1 26 26 C 1.54896 * 104.19437 * 217.10396 * 25 3 2 27 27 C 1.54886 * 102.74984 * 37.93483 * 26 25 3 28 28 C 1.53873 * 110.03836 * 65.49539 * 3 2 1 29 29 H 1.09005 * 109.47257 * 175.01098 * 1 2 3 30 30 H 1.09001 * 109.47077 * 55.01142 * 1 2 3 31 31 H 1.08997 * 109.47636 * 295.00844 * 1 2 3 32 32 H 1.09008 * 109.47257 * 119.99356 * 2 1 3 33 33 H 1.08994 * 109.47758 * 239.99324 * 2 1 3 34 34 H 0.96997 * 120.00530 * 120.93328 * 4 3 2 35 35 H 0.96994 * 120.00011 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47432 * 55.00527 * 10 8 7 37 37 H 1.09006 * 109.46787 * 175.00029 * 10 8 7 38 38 H 0.96991 * 119.99969 * 179.97438 * 14 13 11 39 39 H 1.08002 * 120.00088 * 0.02562 * 20 19 8 40 40 H 1.08002 * 119.99926 * 180.27768 * 21 20 19 41 41 H 1.07995 * 120.00244 * 179.83188 * 22 21 20 42 42 H 1.08006 * 119.99246 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00018 * 180.02562 * 24 23 22 44 44 H 1.08997 * 110.48695 * 335.77612 * 25 3 2 45 45 H 1.08993 * 110.48841 * 98.42616 * 25 3 2 46 46 H 1.09010 * 110.75148 * 279.62719 * 26 25 3 47 47 H 1.08993 * 110.75974 * 156.25408 * 26 25 3 48 48 H 1.08997 * 110.49195 * 203.37765 * 27 26 25 49 49 H 1.09002 * 110.48564 * 80.73952 * 27 26 25 50 50 H 1.08994 * 110.03598 * 238.57471 * 28 3 2 51 51 H 1.09012 * 110.02862 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4794 2.1725 -1.1398 5 6 1.7065 1.7388 -2.3955 6 8 2.4505 0.7967 -2.5880 7 7 1.1089 2.3495 -3.4378 8 6 1.3562 1.8784 -4.8028 9 1 1.4740 0.7947 -4.7974 10 6 0.1733 2.2584 -5.6956 11 6 -1.0591 1.5223 -5.2370 12 1 -1.0042 0.8509 -4.3928 13 6 -2.2568 1.7068 -5.8945 14 7 -2.3238 2.5247 -6.9221 15 14 -3.7846 0.7948 -5.3255 16 1 -3.4460 -0.0582 -4.1581 17 1 -4.8300 1.7750 -4.9363 18 1 -4.2923 -0.0579 -6.4303 19 6 2.6130 2.5177 -5.3348 20 6 2.8775 3.8481 -5.0691 21 6 4.0324 4.4334 -5.5535 22 6 4.9184 3.6905 -6.3113 23 6 4.6511 2.3613 -6.5814 24 6 3.4984 1.7750 -6.0933 25 6 3.5811 1.4581 -0.0675 26 6 3.9889 2.6454 0.8399 27 6 2.9684 2.5542 2.0014 28 6 1.6504 2.1394 1.3154 29 1 -0.3634 -1.0238 -0.0894 30 1 -0.3633 0.5893 -0.8419 31 1 -0.3634 0.4344 0.9313 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 0.9447 2.9680 -0.9908 35 1 0.5156 3.1013 -3.2843 36 1 -0.0001 3.3326 -5.6314 37 1 0.3954 1.9873 -6.7278 38 1 -3.1664 2.6542 -7.3848 39 1 2.1837 4.4294 -4.4799 40 1 4.2413 5.4717 -5.3422 41 1 5.8193 4.1483 -6.6920 42 1 5.3432 1.7810 -7.1737 43 1 3.2899 0.7365 -6.3040 44 1 3.9894 0.5245 0.3194 45 1 3.9164 1.6273 -1.0907 46 1 3.8854 3.5913 0.3081 47 1 5.0065 2.5178 1.2089 48 1 2.8567 3.5231 2.4881 49 1 3.2777 1.7976 2.7225 50 1 1.0450 3.0212 1.1057 51 1 1.0983 1.4497 1.9540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458561907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:56 Heat of formation + Delta-G solvation = -28.228518 kcal Electronic energy + Delta-G solvation = -29564.705846 eV Core-core repulsion = 25848.743089 eV Total energy + Delta-G solvation = -3715.962757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32957 -39.01536 -37.72926 -35.07677 -33.61278 -32.75633 -32.09960 -30.62869 -30.32394 -28.83020 -28.65463 -26.96729 -24.79360 -22.81351 -22.25218 -21.93117 -21.41732 -20.41469 -19.66861 -19.04353 -17.71249 -16.80346 -16.15784 -16.07673 -15.58869 -15.23350 -14.83123 -14.53158 -14.49077 -14.18068 -13.78457 -13.50614 -13.33749 -13.17537 -12.95361 -12.85796 -12.67546 -12.45608 -12.08339 -11.94743 -11.61188 -11.45882 -11.21498 -11.10577 -11.05070 -10.98294 -10.90162 -10.73432 -10.70278 -10.61276 -10.55820 -10.47796 -10.35144 -9.73627 -9.36228 -9.23701 -8.69272 -8.49162 -8.43515 -8.21030 -8.11046 -6.07186 -4.09858 1.83519 1.85546 3.24018 3.26777 3.35393 3.39918 3.81297 4.26074 4.41401 4.45688 4.62062 4.72435 4.88380 5.15797 5.29634 5.30670 5.32093 5.33583 5.38333 5.41365 5.43993 5.55050 5.59261 5.60435 5.74655 5.75092 5.83159 5.86849 5.96235 5.99450 5.99902 6.10081 6.19459 6.23823 6.28509 6.40502 6.41407 6.44667 6.47982 6.55624 6.64854 6.89447 6.90538 7.02001 7.05094 7.18329 7.43230 7.46083 7.56521 7.73669 7.90480 8.29121 8.64502 8.96559 9.23688 9.54969 11.03484 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007916 B = 0.005071 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.399991 B = 5520.485133 C = 8301.003130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.199 3.801 4 N -0.742 5.742 5 C 0.706 3.294 6 O -0.593 6.593 7 N -0.719 5.719 8 C 0.204 3.796 9 H 0.085 0.915 10 C 0.023 3.977 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.069 4.069 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.125 4.125 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.391 0.609 35 H 0.394 0.606 36 H 0.023 0.977 37 H 0.034 0.966 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.073 2.650 13.643 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.112 3.888 4 N -0.398 5.398 5 C 0.406 3.594 6 O -0.472 6.472 7 N -0.371 5.371 8 C 0.098 3.902 9 H 0.103 0.897 10 C -0.014 4.014 11 C -0.553 4.553 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.070 4.070 20 C -0.125 4.125 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.163 4.163 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.599 1.821 13.317 17.754 hybrid contribution -1.542 0.345 0.273 1.604 sum 10.057 2.165 13.591 17.045 Atomic orbital electron populations 1.21727 0.95764 1.01497 1.01569 1.21964 0.96172 0.95846 1.03015 1.20651 0.92738 0.91376 0.84058 1.45342 1.58295 1.31807 1.04372 1.15976 0.80624 0.82501 0.80300 1.90831 1.41281 1.30601 1.84489 1.45173 1.49698 1.36809 1.05433 1.20068 0.92035 0.98102 0.79946 0.89662 1.19398 0.90183 0.97422 0.94417 1.21169 0.93273 1.25926 1.14947 0.92328 1.24980 0.98962 0.95288 0.94948 1.69968 1.26142 1.36473 1.20615 0.86567 0.83147 0.79737 0.78752 1.19757 1.21111 1.21026 1.20619 0.96382 0.93982 0.96050 1.20879 0.96861 0.94722 0.99995 1.21027 0.95084 0.99306 0.99003 1.20972 0.99555 0.94651 1.00256 1.21029 0.97452 0.95181 1.00481 1.21010 0.93890 0.99856 0.97872 1.22744 0.94530 0.97866 1.01293 1.22518 0.98386 0.99066 0.96334 1.22349 0.94992 1.00992 0.97701 1.22485 0.97924 1.00385 0.95547 0.93216 0.92112 0.93403 0.92016 0.89615 0.77574 0.77191 0.95851 0.94815 0.92995 0.86734 0.86909 0.86968 0.86719 0.86255 0.91375 0.89836 0.91715 0.91893 0.91796 0.91631 0.91255 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.53 37.15 0.35 -1.61 16 2 C -0.13 -1.76 4.39 -26.74 -0.12 -1.87 16 3 C 0.20 2.43 0.60 -130.70 -0.08 2.35 16 4 N -0.74 -10.05 4.18 -51.37 -0.21 -10.27 16 5 C 0.71 12.34 7.58 -86.91 -0.66 11.68 16 6 O -0.59 -12.21 12.77 5.29 0.07 -12.14 16 7 N -0.72 -12.89 4.05 -59.81 -0.24 -13.13 16 8 C 0.20 4.15 2.11 -69.08 -0.15 4.01 16 9 H 0.09 1.93 7.44 -51.92 -0.39 1.54 16 10 C 0.02 0.56 4.49 -27.89 -0.13 0.43 16 11 C -0.51 -13.60 8.84 -34.44 -0.30 -13.90 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.07 -1.29 4.91 -104.63 -0.51 -1.81 16 20 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 21 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 22 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 23 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 24 C -0.11 -1.91 9.67 -39.59 -0.38 -2.29 16 25 C -0.13 -1.59 5.58 -25.07 -0.14 -1.73 16 26 C -0.13 -1.27 6.91 -24.74 -0.17 -1.44 16 27 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 28 C -0.13 -1.19 5.79 -25.61 -0.15 -1.34 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.94 7.23 -51.93 -0.38 0.56 16 31 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.09 1.43 6.44 -51.93 -0.33 1.10 16 34 H 0.39 4.46 8.09 -40.82 -0.33 4.13 16 35 H 0.39 6.54 8.62 -40.82 -0.35 6.19 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.11 1.84 7.73 -52.49 -0.41 1.43 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 44 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 45 H 0.08 1.33 6.39 -51.93 -0.33 1.00 16 46 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 51 H 0.07 0.67 6.71 -51.92 -0.35 0.32 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -30.52 401.62 -11.52 -42.04 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -8.63 Total: 12.62 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -4.26 Total: -16.37 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.28 Total: -48.29 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.52 -11.52 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458561907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.813 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds