Wall clock time and date at job start Tue Mar 31 2020 16:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47094 * 2 1 4 4 N 1.46501 * 110.01654 * 304.10568 * 3 2 1 5 5 C 1.34780 * 119.99939 * 300.93955 * 4 3 2 6 6 O 1.21583 * 119.99928 * 354.97698 * 5 4 3 7 7 N 1.34780 * 119.99868 * 174.97588 * 5 4 3 8 8 C 1.46501 * 119.99865 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46785 * 35.00234 * 8 7 5 10 10 C 1.52997 * 109.46943 * 155.00079 * 8 7 5 11 11 C 1.50698 * 109.47533 * 294.99996 * 10 8 7 12 12 H 1.08005 * 119.99456 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00378 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99930 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47051 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47226 * 119.99889 * 15 13 11 18 18 H 1.48506 * 109.47081 * 240.00174 * 15 13 11 19 19 C 1.50704 * 109.47161 * 275.00386 * 8 7 5 20 20 C 1.38228 * 119.99817 * 319.72538 * 19 8 7 21 21 C 1.38240 * 119.99764 * 179.79020 * 20 19 8 22 22 C 1.38238 * 120.00048 * 0.43940 * 21 20 19 23 23 C 1.38237 * 119.99470 * 359.81534 * 22 21 20 24 24 C 1.38228 * 120.00301 * 359.97438 * 23 22 21 25 25 C 1.54269 * 110.03343 * 182.67007 * 3 2 1 26 26 C 1.54896 * 104.19437 * 217.10396 * 25 3 2 27 27 C 1.54886 * 102.74984 * 37.93483 * 26 25 3 28 28 C 1.53873 * 110.03836 * 65.49539 * 3 2 1 29 29 H 1.09005 * 109.47257 * 175.01098 * 1 2 3 30 30 H 1.09001 * 109.47077 * 55.01142 * 1 2 3 31 31 H 1.08997 * 109.47636 * 295.00844 * 1 2 3 32 32 H 1.09008 * 109.47257 * 119.99356 * 2 1 3 33 33 H 1.08994 * 109.47758 * 239.99324 * 2 1 3 34 34 H 0.96997 * 120.00530 * 120.93328 * 4 3 2 35 35 H 0.96994 * 120.00011 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47432 * 55.00527 * 10 8 7 37 37 H 1.09006 * 109.46787 * 175.00029 * 10 8 7 38 38 H 0.96991 * 119.99969 * 179.97438 * 14 13 11 39 39 H 1.08002 * 120.00088 * 0.02562 * 20 19 8 40 40 H 1.08002 * 119.99926 * 180.27768 * 21 20 19 41 41 H 1.07995 * 120.00244 * 179.83188 * 22 21 20 42 42 H 1.08006 * 119.99246 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00018 * 180.02562 * 24 23 22 44 44 H 1.08997 * 110.48695 * 335.77612 * 25 3 2 45 45 H 1.08993 * 110.48841 * 98.42616 * 25 3 2 46 46 H 1.09010 * 110.75148 * 279.62719 * 26 25 3 47 47 H 1.08993 * 110.75974 * 156.25408 * 26 25 3 48 48 H 1.08997 * 110.49195 * 203.37765 * 27 26 25 49 49 H 1.09002 * 110.48564 * 80.73952 * 27 26 25 50 50 H 1.08994 * 110.03598 * 238.57471 * 28 3 2 51 51 H 1.09012 * 110.02862 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4794 2.1725 -1.1398 5 6 1.7065 1.7388 -2.3955 6 8 2.4505 0.7967 -2.5880 7 7 1.1089 2.3495 -3.4378 8 6 1.3562 1.8784 -4.8028 9 1 1.4740 0.7947 -4.7974 10 6 0.1733 2.2584 -5.6956 11 6 -1.0591 1.5223 -5.2370 12 1 -1.0042 0.8509 -4.3928 13 6 -2.2568 1.7068 -5.8945 14 7 -2.3238 2.5247 -6.9221 15 14 -3.7846 0.7948 -5.3255 16 1 -3.4460 -0.0582 -4.1581 17 1 -4.8300 1.7750 -4.9363 18 1 -4.2923 -0.0579 -6.4303 19 6 2.6130 2.5177 -5.3348 20 6 2.8775 3.8481 -5.0691 21 6 4.0324 4.4334 -5.5535 22 6 4.9184 3.6905 -6.3113 23 6 4.6511 2.3613 -6.5814 24 6 3.4984 1.7750 -6.0933 25 6 3.5811 1.4581 -0.0675 26 6 3.9889 2.6454 0.8399 27 6 2.9684 2.5542 2.0014 28 6 1.6504 2.1394 1.3154 29 1 -0.3634 -1.0238 -0.0894 30 1 -0.3633 0.5893 -0.8419 31 1 -0.3634 0.4344 0.9313 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 0.9447 2.9680 -0.9908 35 1 0.5156 3.1013 -3.2843 36 1 -0.0001 3.3326 -5.6314 37 1 0.3954 1.9873 -6.7278 38 1 -3.1664 2.6542 -7.3848 39 1 2.1837 4.4294 -4.4799 40 1 4.2413 5.4717 -5.3422 41 1 5.8193 4.1483 -6.6920 42 1 5.3432 1.7810 -7.1737 43 1 3.2899 0.7365 -6.3040 44 1 3.9894 0.5245 0.3194 45 1 3.9164 1.6273 -1.0907 46 1 3.8854 3.5913 0.3081 47 1 5.0065 2.5178 1.2089 48 1 2.8567 3.5231 2.4881 49 1 3.2777 1.7976 2.7225 50 1 1.0450 3.0212 1.1057 51 1 1.0983 1.4497 1.9540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458561907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:55 Heat of formation + Delta-G solvation = -44.240313 kcal Electronic energy + Delta-G solvation = -29565.400170 eV Core-core repulsion = 25848.743089 eV Total energy + Delta-G solvation = -3716.657081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58637 -40.28298 -38.93779 -36.66399 -34.76580 -34.65448 -33.40729 -31.93179 -31.60698 -30.48662 -29.63556 -28.01307 -26.56797 -23.86697 -23.75614 -23.39585 -22.63750 -21.44983 -21.07543 -20.18355 -19.06786 -18.58752 -17.68540 -17.22545 -16.63790 -16.58326 -16.45671 -16.09492 -15.73015 -15.42704 -14.93891 -14.82102 -14.64701 -14.37995 -14.17895 -14.10764 -14.04939 -13.81338 -13.65511 -13.42428 -12.92540 -12.91302 -12.62458 -12.53684 -12.47318 -12.14351 -12.12601 -11.99769 -11.87346 -11.85958 -11.71355 -11.56954 -11.48572 -11.36701 -11.28435 -10.80915 -10.57643 -10.05682 -9.75004 -9.60959 -9.46990 -8.20023 -6.29420 0.53297 0.57463 1.36714 1.39605 1.51064 1.93835 2.38937 2.40857 2.97449 3.13564 3.46971 3.61302 3.77200 3.92509 4.03501 4.05443 4.21858 4.28381 4.32805 4.34960 4.42854 4.47349 4.54679 4.62850 4.67610 4.76419 4.77237 4.81079 4.81662 4.87812 4.97458 5.05777 5.11431 5.14602 5.19536 5.21275 5.25798 5.32590 5.33082 5.39040 5.45096 5.45272 5.51061 5.62570 5.64598 5.68112 5.79213 5.90310 5.96482 6.17514 6.21095 6.25281 6.83129 7.30654 7.40002 7.83995 8.90995 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007916 B = 0.005071 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.399991 B = 5520.485133 C = 8301.003130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.193 3.807 4 N -0.726 5.726 5 C 0.705 3.295 6 O -0.626 6.626 7 N -0.717 5.717 8 C 0.222 3.778 9 H 0.052 0.948 10 C 0.038 3.962 11 C -0.523 4.523 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.282 1.282 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.119 4.119 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.403 0.597 35 H 0.401 0.599 36 H 0.011 0.989 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.694 4.063 15.973 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.107 3.893 4 N -0.383 5.383 5 C 0.405 3.595 6 O -0.508 6.508 7 N -0.370 5.370 8 C 0.116 3.884 9 H 0.071 0.929 10 C 0.001 3.999 11 C -0.561 4.561 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.208 1.208 19 C -0.096 4.096 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.239 0.761 35 H 0.235 0.765 36 H 0.030 0.970 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.211 3.257 15.686 20.144 hybrid contribution -1.645 -0.118 -0.487 1.720 sum 10.566 3.139 15.198 18.775 Atomic orbital electron populations 1.21686 0.95524 1.01028 1.01838 1.21930 0.96299 0.96515 1.02060 1.20884 0.92494 0.91056 0.84889 1.45262 1.57713 1.32004 1.03274 1.16082 0.80223 0.82018 0.81190 1.90811 1.42714 1.32112 1.85139 1.44976 1.50147 1.37036 1.04824 1.19488 0.91826 0.96349 0.80721 0.92947 1.19131 0.91126 0.96188 0.93466 1.21376 0.94343 1.25749 1.14607 0.93133 1.25745 1.01934 0.96034 0.94978 1.70075 1.27049 1.37808 1.21701 0.85549 0.79565 0.78605 0.78199 1.19573 1.19992 1.20803 1.20504 0.96173 0.95201 0.97768 1.21027 0.98127 0.94014 1.00583 1.21423 0.93991 1.00856 0.98025 1.21446 1.00408 0.94063 0.98889 1.21369 0.96686 0.96118 1.00022 1.21156 0.95326 0.99839 0.98893 1.22681 0.94887 0.99253 0.99681 1.22483 0.99620 0.97324 0.96363 1.22335 0.93450 1.02393 0.97016 1.22480 0.98879 1.00789 0.93581 0.93618 0.94790 0.90521 0.89738 0.93767 0.76096 0.76458 0.97029 0.97925 0.92763 0.86353 0.83714 0.83178 0.83979 0.87185 0.91374 0.93728 0.92218 0.90873 0.89963 0.90451 0.90101 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.53 71.98 0.69 -3.02 16 2 C -0.13 -3.44 4.39 30.59 0.13 -3.31 16 3 C 0.19 4.58 0.60 4.33 0.00 4.59 16 4 N -0.73 -19.83 4.18 -434.70 -1.82 -21.64 16 5 C 0.70 25.92 7.58 179.05 1.36 27.28 16 6 O -0.63 -27.61 12.77 -3.98 -0.05 -27.66 16 7 N -0.72 -27.19 4.05 -461.39 -1.87 -29.06 16 8 C 0.22 9.76 2.11 44.25 0.09 9.85 16 9 H 0.05 2.61 7.44 -2.38 -0.02 2.59 16 10 C 0.04 1.96 4.49 29.85 0.13 2.10 16 11 C -0.52 -28.79 8.84 25.60 0.23 -28.56 16 12 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 13 C 0.01 0.64 5.46 84.65 0.46 1.11 16 14 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 15 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 C -0.10 -3.75 4.91 -19.87 -0.10 -3.85 16 20 C -0.12 -4.10 9.32 22.27 0.21 -3.90 16 21 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 22 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 24 C -0.13 -4.96 9.67 22.27 0.22 -4.74 16 25 C -0.13 -3.19 5.58 31.67 0.18 -3.01 16 26 C -0.12 -2.20 6.91 31.89 0.22 -1.98 16 27 C -0.11 -1.56 6.83 31.67 0.22 -1.34 16 28 C -0.12 -1.89 5.79 31.32 0.18 -1.71 16 29 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.03 1.04 7.23 -2.39 -0.02 1.03 16 31 H 0.08 1.52 6.97 -2.39 -0.02 1.50 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.04 1.55 6.44 -2.39 -0.02 1.54 16 34 H 0.40 8.91 8.09 -92.71 -0.75 8.16 16 35 H 0.40 13.89 8.62 -92.71 -0.80 13.09 16 36 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.12 3.85 7.73 -2.91 -0.02 3.83 16 40 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 43 H 0.11 4.12 8.04 -2.91 -0.02 4.09 16 44 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 45 H 0.04 1.48 6.39 -2.39 -0.02 1.46 16 46 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.08 1.13 7.44 -2.39 -0.02 1.12 16 51 H 0.09 1.23 6.71 -2.38 -0.02 1.21 16 Total: -1.00 -70.09 401.62 2.84 -67.26 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.63 Total: 39.83 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.89 Total: -20.57 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -3.40 Total: -104.84 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.09 2.84 -67.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458561907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds