Wall clock time and date at job start Tue Mar 31 2020 16:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47506 * 2 1 4 4 N 1.46499 * 110.82116 * 301.96145 * 3 2 1 5 5 C 1.34775 * 120.00062 * 300.55943 * 4 3 2 6 6 O 1.21591 * 119.99720 * 355.08496 * 5 4 3 7 7 N 1.34774 * 120.00221 * 175.08887 * 5 4 3 8 8 C 1.46500 * 120.00250 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46795 * 325.00238 * 8 7 5 10 10 C 1.52999 * 109.47625 * 205.00274 * 8 7 5 11 11 C 1.50705 * 109.47029 * 64.99534 * 10 8 7 12 12 H 1.07998 * 120.00064 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99822 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99752 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00200 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47097 * 89.99731 * 15 13 11 17 17 H 1.48493 * 109.47411 * 210.00018 * 15 13 11 18 18 H 1.48501 * 109.46998 * 330.00032 * 15 13 11 19 19 C 1.50697 * 109.47067 * 84.99977 * 8 7 5 20 20 C 1.38233 * 119.99939 * 39.73105 * 19 8 7 21 21 C 1.38234 * 119.99954 * 179.81028 * 20 19 8 22 22 C 1.38233 * 120.00291 * 0.39432 * 21 20 19 23 23 C 1.38241 * 119.99685 * 359.86062 * 22 21 20 24 24 C 1.38236 * 120.00108 * 359.95291 * 23 22 21 25 25 C 1.54893 * 110.75277 * 65.29738 * 3 2 1 26 26 C 1.54271 * 104.19551 * 156.25784 * 25 3 2 27 27 C 1.53872 * 106.59661 * 336.39100 * 26 25 3 28 28 C 1.54258 * 106.60055 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47310 * 64.41421 * 1 2 3 30 30 H 1.09005 * 109.47361 * 184.41601 * 1 2 3 31 31 H 1.09000 * 109.46889 * 304.41659 * 1 2 3 32 32 H 1.09006 * 109.46770 * 239.99877 * 2 1 3 33 33 H 1.09001 * 109.47500 * 120.00824 * 2 1 3 34 34 H 0.97001 * 119.99899 * 120.54747 * 4 3 2 35 35 H 0.97001 * 120.00290 * 0.02562 * 7 5 4 36 36 H 1.08991 * 109.47555 * 185.00101 * 10 8 7 37 37 H 1.09005 * 109.46606 * 305.00328 * 10 8 7 38 38 H 0.97002 * 119.99570 * 180.02562 * 14 13 11 39 39 H 1.08002 * 119.99851 * 359.97438 * 20 19 8 40 40 H 1.08002 * 120.00243 * 180.22760 * 21 20 19 41 41 H 1.08000 * 120.00042 * 179.83347 * 22 21 20 42 42 H 1.07996 * 119.99535 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.99891 * 180.02562 * 24 23 22 44 44 H 1.08998 * 110.48786 * 37.57822 * 25 3 2 45 45 H 1.09000 * 110.48958 * 274.93274 * 25 3 2 46 46 H 1.08998 * 110.02986 * 95.67475 * 26 25 3 47 47 H 1.09001 * 110.03386 * 217.10606 * 26 25 3 48 48 H 1.09005 * 110.03166 * 119.28946 * 27 26 25 49 49 H 1.09003 * 110.03186 * 240.71108 * 27 26 25 50 50 H 1.09004 * 110.49068 * 142.29317 * 28 27 26 51 51 H 1.09000 * 110.48779 * 264.80209 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5303 2.1750 -1.1617 5 6 1.8095 1.7420 -2.4071 6 8 2.5572 0.7968 -2.5687 7 7 1.2601 2.3566 -3.4733 8 6 1.5640 1.8863 -4.8271 9 1 2.5963 1.5384 -4.8676 10 6 1.3733 3.0340 -5.8207 11 6 2.3836 4.1160 -5.5382 12 1 3.0912 3.9968 -4.7311 13 6 2.4046 5.2581 -6.3103 14 7 3.2865 6.2021 -6.0641 15 14 1.1802 5.4647 -7.7059 16 1 -0.0446 6.1311 -7.1952 17 1 1.7860 6.2959 -8.7769 18 1 0.8259 4.1312 -8.2550 19 6 0.6375 0.7529 -5.1849 20 6 -0.6923 0.8029 -4.8108 21 6 -1.5430 -0.2350 -5.1425 22 6 -1.0622 -1.3265 -5.8411 23 6 0.2689 -1.3789 -6.2107 24 6 1.1188 -0.3393 -5.8824 25 6 1.6523 2.1616 1.3159 26 6 2.6913 3.2943 1.4482 27 6 3.9221 2.8591 0.6337 28 6 3.5884 1.4770 0.0353 29 1 -0.3634 0.4438 -0.9269 30 1 -0.3634 -1.0246 0.0791 31 1 -0.3633 0.5809 0.8478 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5140 0.8899 34 1 0.9916 2.9716 -1.0346 35 1 0.6639 3.1109 -3.3444 36 1 1.5128 2.6627 -6.8358 37 1 0.3672 3.4405 -5.7174 38 1 3.3010 7.0058 -6.6071 39 1 -1.0671 1.6540 -4.2617 40 1 -2.5829 -0.1943 -4.8534 41 1 -1.7263 -2.1386 -6.0979 42 1 0.6446 -2.2319 -6.7562 43 1 2.1585 -0.3801 -6.1714 44 1 1.7249 1.4767 2.1607 45 1 0.6459 2.5738 1.2432 46 1 2.2856 4.2221 1.0449 47 1 2.9649 3.4296 2.4946 48 1 4.1138 3.5758 -0.1650 49 1 4.7930 2.7833 1.2847 50 1 3.9946 1.3893 -0.9724 51 1 3.9759 0.6819 0.6723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458561908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:59 Heat of formation + Delta-G solvation = -26.989532 kcal Electronic energy + Delta-G solvation = -29672.257563 eV Core-core repulsion = 25956.348532 eV Total energy + Delta-G solvation = -3715.909031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29211 -39.08686 -37.71441 -35.15033 -33.51006 -32.72585 -32.19870 -30.71033 -30.39415 -29.23755 -28.71605 -27.15092 -24.91847 -22.77660 -22.32120 -21.73503 -21.37637 -20.20306 -19.72906 -19.09723 -17.77310 -17.08627 -16.38750 -15.92156 -15.47812 -15.21162 -14.94785 -14.61157 -14.35764 -14.25454 -14.01760 -13.54480 -13.39200 -13.10399 -13.03540 -12.87439 -12.81035 -12.51838 -12.36100 -11.99512 -11.88511 -11.51235 -11.29970 -11.25036 -11.06222 -11.03597 -10.95600 -10.77068 -10.72468 -10.49364 -10.43787 -10.30499 -10.18401 -9.85292 -9.36868 -9.29687 -8.69484 -8.61889 -8.56858 -8.30349 -8.20301 -6.09942 -4.09147 1.72432 1.75068 3.20752 3.25322 3.34620 3.37960 3.80190 4.16096 4.38945 4.48385 4.67563 4.72243 4.87021 5.18983 5.21245 5.22537 5.24353 5.31550 5.35862 5.40617 5.46906 5.49067 5.55309 5.65510 5.77492 5.79412 5.85894 5.87929 5.89696 5.90690 6.02989 6.06835 6.11031 6.24052 6.28217 6.28460 6.34939 6.37896 6.47295 6.48483 6.55889 6.78055 6.80150 6.90343 6.97121 7.02926 7.08472 7.35036 7.37548 7.55637 7.67224 8.45526 8.62030 8.96869 9.22139 9.51190 11.02866 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.004931 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.487835 B = 5676.612025 C = 8093.179777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.198 3.802 4 N -0.736 5.736 5 C 0.709 3.291 6 O -0.593 6.593 7 N -0.719 5.719 8 C 0.214 3.786 9 H 0.091 0.909 10 C -0.014 4.014 11 C -0.517 4.517 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.073 4.073 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.395 0.605 36 H 0.033 0.967 37 H 0.017 0.983 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.087 0.913 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -10.734 12.102 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.111 3.889 4 N -0.391 5.391 5 C 0.410 3.590 6 O -0.472 6.472 7 N -0.371 5.371 8 C 0.108 3.892 9 H 0.109 0.891 10 C -0.052 4.052 11 C -0.555 4.555 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.702 3.298 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.125 4.125 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.170 4.170 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.106 0.894 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.995 -11.420 11.880 17.902 hybrid contribution -1.152 1.107 -0.686 1.739 sum -8.148 -10.313 11.193 17.263 Atomic orbital electron populations 1.21676 0.95995 1.00890 1.01543 1.21838 0.95910 0.95900 1.03123 1.20890 0.93268 0.90930 0.83857 1.45008 1.58551 1.31587 1.03997 1.15902 0.80449 0.82452 0.80235 1.90828 1.40472 1.30753 1.85103 1.45072 1.51373 1.35839 1.04845 1.19777 0.97002 0.91724 0.80655 0.89113 1.19879 0.97643 0.93201 0.94440 1.21017 1.16577 1.00510 1.17383 0.90596 1.24986 0.95362 0.95770 0.97033 1.69910 1.35443 1.08209 1.40158 0.86863 0.81649 0.78592 0.82715 1.20351 1.21367 1.18931 1.20631 0.94824 0.95885 0.96136 1.20894 0.93262 0.98402 0.99999 1.21033 0.99180 0.94577 0.99612 1.20995 0.95702 0.98362 1.00213 1.21050 0.93853 0.98600 1.00590 1.21036 0.99815 0.93235 0.98445 1.22649 0.99061 0.97770 0.96619 1.22140 0.95802 0.98294 0.99919 1.22108 0.97297 0.97590 0.99129 1.22766 0.95101 0.96398 1.02746 0.92726 0.93385 0.93230 0.89690 0.91890 0.77459 0.77166 0.94876 0.96437 0.92706 0.86666 0.86846 0.86893 0.86618 0.86096 0.90353 0.91271 0.91829 0.92060 0.91658 0.92298 0.89436 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.58 37.16 0.36 -1.26 16 2 C -0.13 -1.61 4.79 -26.74 -0.13 -1.74 16 3 C 0.20 2.43 0.37 -129.82 -0.05 2.38 16 4 N -0.74 -10.06 4.46 -50.55 -0.23 -10.28 16 5 C 0.71 12.41 7.92 -86.92 -0.69 11.72 16 6 O -0.59 -12.19 12.75 5.29 0.07 -12.12 16 7 N -0.72 -12.70 4.02 -59.81 -0.24 -12.94 16 8 C 0.21 4.21 2.12 -69.08 -0.15 4.07 16 9 H 0.09 2.01 7.44 -51.92 -0.39 1.63 16 10 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 11 C -0.52 -13.82 9.39 -34.44 -0.32 -14.14 16 12 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 15 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 19 C -0.07 -1.30 4.91 -104.62 -0.51 -1.82 16 20 C -0.11 -1.71 9.33 -39.58 -0.37 -2.08 16 21 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 22 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 24 C -0.11 -1.79 9.67 -39.58 -0.38 -2.17 16 25 C -0.12 -1.18 4.92 -25.07 -0.12 -1.30 16 26 C -0.12 -1.25 6.78 -25.61 -0.17 -1.42 16 27 C -0.12 -1.50 6.78 -25.62 -0.17 -1.67 16 28 C -0.13 -1.78 5.68 -25.06 -0.14 -1.92 16 29 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 7.16 -51.93 -0.37 0.10 16 32 H 0.08 1.34 6.47 -51.93 -0.34 1.01 16 33 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.39 4.63 8.52 -40.82 -0.35 4.28 16 35 H 0.39 6.40 8.62 -40.82 -0.35 6.05 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 1.71 7.71 -52.49 -0.40 1.30 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.12 1.96 8.04 -52.49 -0.42 1.53 16 44 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 45 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 1.50 6.34 -51.93 -0.33 1.17 16 51 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -31.17 400.90 -11.25 -42.42 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.75 Total: 13.16 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.25 Total: -16.49 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.31 Total: -49.24 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.17 -11.25 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458561908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.435 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds