Wall clock time and date at job start Tue Mar 31 2020 16:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47327 * 2 1 4 4 C 1.50700 * 109.47128 * 240.00312 * 2 1 3 5 5 H 1.08002 * 120.00052 * 240.00006 * 4 2 1 6 6 C 1.37880 * 120.00091 * 59.99630 * 4 2 1 7 7 N 1.31514 * 119.99406 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00042 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47064 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46816 * 120.00344 * 8 6 4 11 11 H 1.48495 * 109.47304 * 240.00213 * 8 6 4 12 12 C 1.53004 * 109.47434 * 120.00179 * 2 1 3 13 13 N 1.46495 * 109.47018 * 299.99958 * 12 2 1 14 14 C 1.34777 * 120.00046 * 179.97438 * 13 12 2 15 15 O 1.21583 * 120.00031 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99958 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00079 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.26760 * 35.62459 * 17 16 14 19 19 C 1.54603 * 110.30909 * 157.77892 * 17 16 14 20 20 C 1.54337 * 102.27531 * 92.57980 * 19 17 16 21 21 C 1.53006 * 110.30316 * 267.39229 * 20 19 17 22 22 C 1.52997 * 110.30466 * 145.33632 * 20 19 17 23 23 C 1.51367 * 105.25520 * 26.36240 * 20 19 17 24 24 C 1.38507 * 130.39342 * 162.77227 * 23 20 19 25 25 C 1.38100 * 120.21300 * 179.97438 * 24 23 20 26 26 C 1.38250 * 119.93964 * 0.06625 * 25 24 23 27 27 C 1.38106 * 119.93218 * 359.97183 * 26 25 24 28 28 C 1.38213 * 109.75948 * 342.76999 * 23 20 19 29 29 H 1.09000 * 109.46781 * 299.99675 * 1 2 3 30 30 H 1.08999 * 109.47246 * 59.99180 * 1 2 3 31 31 H 1.08992 * 109.46849 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47180 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47102 * 300.00587 * 3 2 1 34 34 H 1.09000 * 109.46925 * 60.00413 * 3 2 1 35 35 H 0.97008 * 119.99340 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46960 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.46700 * 59.99778 * 12 2 1 38 38 H 0.97003 * 120.00565 * 359.97438 * 13 12 2 39 39 H 0.97003 * 120.00653 * 359.97438 * 16 14 13 40 40 H 1.09005 * 110.90404 * 334.38227 * 19 17 16 41 41 H 1.09002 * 110.85070 * 210.75634 * 19 17 16 42 42 H 1.09001 * 109.47002 * 298.62240 * 21 20 19 43 43 H 1.08993 * 109.46955 * 58.62678 * 21 20 19 44 44 H 1.09000 * 109.47050 * 178.62506 * 21 20 19 45 45 H 1.09001 * 109.47070 * 181.37512 * 22 20 19 46 46 H 1.08998 * 109.47264 * 301.36961 * 22 20 19 47 47 H 1.09003 * 109.47093 * 61.37395 * 22 20 19 48 48 H 1.08002 * 119.89229 * 359.97438 * 24 23 20 49 49 H 1.08009 * 120.03051 * 180.02562 * 25 24 23 50 50 H 1.08003 * 120.03632 * 179.97438 * 26 25 24 51 51 H 1.07997 * 119.89297 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1872 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5753 -1.4806 3.7810 16 7 1.4273 0.1435 4.7699 17 6 1.7804 -0.3576 6.1005 18 1 2.7936 -0.7595 6.0961 19 6 1.6537 0.7706 7.1499 20 6 0.2085 0.5846 7.6588 21 6 -0.7538 1.4639 6.8575 22 6 0.1221 0.9248 9.1480 23 6 -0.1073 -0.8787 7.4351 24 6 -1.1061 -1.6738 7.9724 25 6 -1.2022 -3.0045 7.6161 26 6 -0.2982 -3.5463 6.7213 27 6 0.6989 -2.7554 6.1851 28 6 0.7959 -1.4201 6.5399 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.7093 1.1619 -3.4843 36 1 3.1300 -0.7216 1.2489 37 1 1.6767 -1.7489 1.2492 38 1 0.9944 0.7582 2.3565 39 1 0.8699 0.9324 4.6811 40 1 1.7782 1.7491 6.6859 41 1 2.3705 0.6302 7.9590 42 1 -0.4838 2.5117 6.9893 43 1 -0.6908 1.2024 5.8013 44 1 -1.7723 1.3039 7.2113 45 1 -0.8977 0.7656 9.4984 46 1 0.8028 0.2831 9.7073 47 1 0.3995 1.9680 9.2990 48 1 -1.8121 -1.2516 8.6723 49 1 -1.9825 -3.6217 8.0366 50 1 -0.3717 -4.5870 6.4419 51 1 1.4045 -3.1791 5.4859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458583715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:36 Heat of formation + Delta-G solvation = -18.261088 kcal Electronic energy + Delta-G solvation = -29009.842823 eV Core-core repulsion = 25294.312286 eV Total energy + Delta-G solvation = -3715.530537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98691 -39.19561 -36.89583 -36.32929 -34.19414 -33.23687 -31.49495 -30.49040 -30.07431 -28.55927 -27.57270 -25.70031 -25.57278 -24.88821 -23.69974 -22.77380 -21.23497 -20.40886 -19.46403 -18.75115 -18.10478 -16.69593 -15.89254 -15.70300 -15.40290 -15.22597 -14.78220 -14.74675 -14.42810 -14.07748 -13.83712 -13.73655 -13.48048 -13.25898 -12.89286 -12.84513 -12.61808 -12.45001 -12.24242 -12.15890 -11.94980 -11.72766 -11.39337 -11.28579 -11.22132 -11.17877 -10.85896 -10.70874 -10.64174 -10.63220 -10.36269 -10.19060 -9.75145 -9.60589 -9.28872 -8.98104 -8.82790 -8.76017 -8.66857 -8.39976 -8.16125 -6.00572 -4.10208 1.26735 1.38029 3.13584 3.28303 3.36909 3.42160 3.66234 3.79605 4.15332 4.26389 4.40483 4.65744 4.76359 4.81482 4.86402 4.99347 5.02026 5.09406 5.26380 5.31644 5.38002 5.40284 5.51366 5.53175 5.62764 5.70278 5.72636 5.84262 5.91652 5.95707 6.01622 6.12066 6.24581 6.39749 6.41837 6.51820 6.53476 6.65347 6.71207 6.83107 6.85334 6.94034 6.97609 7.05914 7.13815 7.34044 7.45383 7.58400 7.71897 8.03480 8.14933 8.40642 8.52606 8.90085 9.09411 9.55515 11.00898 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.002685 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.354723 B =10424.316605 C =10944.272713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.152 3.848 13 N -0.733 5.733 14 C 0.699 3.301 15 O -0.597 6.597 16 N -0.742 5.742 17 C 0.204 3.796 18 H 0.095 0.905 19 C -0.120 4.120 20 C -0.027 4.027 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.079 4.079 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.082 4.082 28 C -0.105 4.105 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 1.644 22.996 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.029 3.971 13 N -0.387 5.387 14 C 0.399 3.601 15 O -0.476 6.476 16 N -0.398 5.398 17 C 0.098 3.902 18 H 0.113 0.887 19 C -0.158 4.158 20 C -0.027 4.027 21 C -0.195 4.195 22 C -0.194 4.194 23 C -0.079 4.079 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.100 4.100 28 C -0.107 4.107 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.227 0.773 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.133 0.867 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.912 0.844 22.892 23.240 hybrid contribution -0.365 0.132 -1.016 1.088 sum -4.277 0.976 21.876 22.312 Atomic orbital electron populations 1.21810 0.97813 0.99116 0.99942 1.18362 0.92756 0.92763 0.90590 1.21816 0.98551 0.98380 0.99961 1.21037 1.31294 1.12049 0.89880 0.92371 1.24881 0.94891 0.94941 0.98846 1.69822 1.36828 1.22804 1.23054 0.86522 0.78629 0.79773 0.83004 1.19739 1.21093 1.21082 1.21559 0.97808 0.95367 0.82412 1.45507 1.55597 1.33012 1.04622 1.16087 0.80387 0.82997 0.80660 1.90859 1.43228 1.27511 1.86028 1.45267 1.57386 1.32957 1.04238 1.20060 0.97717 0.91223 0.81181 0.88690 1.22787 0.96024 0.98780 0.98164 1.20114 0.95192 0.91176 0.96226 1.21889 0.98858 0.98787 0.99952 1.21829 1.02027 1.01428 0.94110 1.20448 0.95415 0.94849 0.97231 1.20511 0.98164 0.93606 1.00766 1.21025 0.99134 0.95071 0.98294 1.21091 0.95508 0.99915 0.97899 1.20868 0.97975 0.92812 0.98367 1.20885 0.98035 0.94347 0.97403 0.97605 0.89681 0.95509 0.95471 0.89673 0.97586 0.93115 0.93008 0.93063 0.77311 0.77340 0.89555 0.89375 0.91935 0.92328 0.92266 0.92494 0.92353 0.92232 0.86655 0.86179 0.86045 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.31 8.01 -34.44 -0.28 -13.59 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 N -0.73 -13.36 4.96 -65.23 -0.32 -13.68 16 14 C 0.70 12.49 8.55 -86.92 -0.74 11.75 16 15 O -0.60 -12.75 15.86 5.29 0.08 -12.67 16 16 N -0.74 -9.97 5.01 -58.66 -0.29 -10.26 16 17 C 0.20 2.50 3.17 -67.91 -0.22 2.28 16 18 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 19 C -0.12 -1.04 5.70 -25.19 -0.14 -1.18 16 20 C -0.03 -0.23 0.88 -154.63 -0.14 -0.37 16 21 C -0.14 -1.10 8.44 37.16 0.31 -0.79 16 22 C -0.14 -0.94 8.30 37.16 0.31 -0.63 16 23 C -0.08 -0.86 4.92 -104.20 -0.51 -1.37 16 24 C -0.11 -1.15 9.78 -39.53 -0.39 -1.54 16 25 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 26 C -0.13 -1.49 10.05 -39.63 -0.40 -1.89 16 27 C -0.08 -1.14 10.04 -39.53 -0.40 -1.53 16 28 C -0.11 -1.36 5.76 -104.21 -0.60 -1.96 16 29 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 6.46 6.18 -40.82 -0.25 6.21 16 39 H 0.39 4.38 6.91 -40.82 -0.28 4.09 16 40 H 0.09 0.66 7.81 -51.93 -0.41 0.25 16 41 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.37 8.00 -51.93 -0.42 -0.05 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.12 0.95 7.92 -52.49 -0.42 0.53 16 49 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 50 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 51 H 0.13 1.97 7.87 -52.49 -0.41 1.56 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -29.59 395.76 -10.68 -40.27 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.43 Total: 9.31 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.17 Total: -11.56 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.10 Total: -47.15 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.59 -10.68 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458583715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.005 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds