Wall clock time and date at job start Tue Mar 31 2020 16:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47327 * 2 1 4 4 C 1.50700 * 109.47128 * 240.00312 * 2 1 3 5 5 H 1.08002 * 120.00052 * 240.00006 * 4 2 1 6 6 C 1.37880 * 120.00091 * 59.99630 * 4 2 1 7 7 N 1.31514 * 119.99406 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00042 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47064 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46816 * 120.00344 * 8 6 4 11 11 H 1.48495 * 109.47304 * 240.00213 * 8 6 4 12 12 C 1.53004 * 109.47434 * 120.00179 * 2 1 3 13 13 N 1.46495 * 109.47018 * 299.99958 * 12 2 1 14 14 C 1.34777 * 120.00046 * 179.97438 * 13 12 2 15 15 O 1.21583 * 120.00031 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99958 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00079 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.26760 * 35.62459 * 17 16 14 19 19 C 1.54603 * 110.30909 * 157.77892 * 17 16 14 20 20 C 1.54337 * 102.27531 * 92.57980 * 19 17 16 21 21 C 1.53006 * 110.30316 * 267.39229 * 20 19 17 22 22 C 1.52997 * 110.30466 * 145.33632 * 20 19 17 23 23 C 1.51367 * 105.25520 * 26.36240 * 20 19 17 24 24 C 1.38507 * 130.39342 * 162.77227 * 23 20 19 25 25 C 1.38100 * 120.21300 * 179.97438 * 24 23 20 26 26 C 1.38250 * 119.93964 * 0.06625 * 25 24 23 27 27 C 1.38106 * 119.93218 * 359.97183 * 26 25 24 28 28 C 1.38213 * 109.75948 * 342.76999 * 23 20 19 29 29 H 1.09000 * 109.46781 * 299.99675 * 1 2 3 30 30 H 1.08999 * 109.47246 * 59.99180 * 1 2 3 31 31 H 1.08992 * 109.46849 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47180 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47102 * 300.00587 * 3 2 1 34 34 H 1.09000 * 109.46925 * 60.00413 * 3 2 1 35 35 H 0.97008 * 119.99340 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46960 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.46700 * 59.99778 * 12 2 1 38 38 H 0.97003 * 120.00565 * 359.97438 * 13 12 2 39 39 H 0.97003 * 120.00653 * 359.97438 * 16 14 13 40 40 H 1.09005 * 110.90404 * 334.38227 * 19 17 16 41 41 H 1.09002 * 110.85070 * 210.75634 * 19 17 16 42 42 H 1.09001 * 109.47002 * 298.62240 * 21 20 19 43 43 H 1.08993 * 109.46955 * 58.62678 * 21 20 19 44 44 H 1.09000 * 109.47050 * 178.62506 * 21 20 19 45 45 H 1.09001 * 109.47070 * 181.37512 * 22 20 19 46 46 H 1.08998 * 109.47264 * 301.36961 * 22 20 19 47 47 H 1.09003 * 109.47093 * 61.37395 * 22 20 19 48 48 H 1.08002 * 119.89229 * 359.97438 * 24 23 20 49 49 H 1.08009 * 120.03051 * 180.02562 * 25 24 23 50 50 H 1.08003 * 120.03632 * 179.97438 * 26 25 24 51 51 H 1.07997 * 119.89297 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1872 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5753 -1.4806 3.7810 16 7 1.4273 0.1435 4.7699 17 6 1.7804 -0.3576 6.1005 18 1 2.7936 -0.7595 6.0961 19 6 1.6537 0.7706 7.1499 20 6 0.2085 0.5846 7.6588 21 6 -0.7538 1.4639 6.8575 22 6 0.1221 0.9248 9.1480 23 6 -0.1073 -0.8787 7.4351 24 6 -1.1061 -1.6738 7.9724 25 6 -1.2022 -3.0045 7.6161 26 6 -0.2982 -3.5463 6.7213 27 6 0.6989 -2.7554 6.1851 28 6 0.7959 -1.4201 6.5399 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.7093 1.1619 -3.4843 36 1 3.1300 -0.7216 1.2489 37 1 1.6767 -1.7489 1.2492 38 1 0.9944 0.7582 2.3565 39 1 0.8699 0.9324 4.6811 40 1 1.7782 1.7491 6.6859 41 1 2.3705 0.6302 7.9590 42 1 -0.4838 2.5117 6.9893 43 1 -0.6908 1.2024 5.8013 44 1 -1.7723 1.3039 7.2113 45 1 -0.8977 0.7656 9.4984 46 1 0.8028 0.2831 9.7073 47 1 0.3995 1.9680 9.2990 48 1 -1.8121 -1.2516 8.6723 49 1 -1.9825 -3.6217 8.0366 50 1 -0.3717 -4.5870 6.4419 51 1 1.4045 -3.1791 5.4859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458583715.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:35 Heat of formation + Delta-G solvation = -33.626046 kcal Electronic energy + Delta-G solvation = -29010.509098 eV Core-core repulsion = 25294.312286 eV Total energy + Delta-G solvation = -3716.196812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93014 -40.57430 -38.25973 -37.57847 -35.30466 -34.97991 -32.95360 -31.90948 -30.90268 -29.44578 -28.11923 -27.56581 -27.44105 -26.61533 -24.65202 -23.62497 -22.45148 -21.58014 -20.58217 -20.26397 -19.50702 -17.78542 -17.75317 -16.87849 -16.64303 -16.40442 -16.19566 -15.94260 -15.61876 -15.29367 -14.84684 -14.74217 -14.70830 -14.55257 -14.40934 -14.00401 -13.89265 -13.57154 -13.20623 -13.16815 -13.10855 -12.90339 -12.73436 -12.65527 -12.57135 -12.42897 -12.25967 -12.14446 -12.12157 -11.89264 -11.48824 -11.43417 -11.42410 -11.33088 -11.12661 -10.70156 -10.41117 -10.28776 -9.78015 -9.67265 -9.53654 -8.02802 -6.18239 0.37137 0.47684 1.40851 1.44852 1.54455 1.85586 2.22393 2.46001 2.86351 3.20819 3.36075 3.45598 3.51383 3.98348 4.01026 4.12387 4.17485 4.25402 4.34682 4.42802 4.53014 4.55657 4.62944 4.68195 4.70843 4.84314 4.87401 4.96627 4.99817 5.02549 5.05022 5.05755 5.09923 5.11844 5.18112 5.19966 5.27628 5.34288 5.38538 5.44269 5.56095 5.61542 5.61994 5.64795 5.66961 5.67357 5.76467 6.07434 6.12011 6.14886 6.21858 6.43723 6.86006 7.17022 7.49462 7.66214 8.96416 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.002685 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.354723 B =10424.316605 C =10944.272713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.170 3.830 13 N -0.727 5.727 14 C 0.697 3.303 15 O -0.636 6.636 16 N -0.721 5.721 17 C 0.198 3.802 18 H 0.070 0.930 19 C -0.110 4.110 20 C -0.023 4.023 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.076 4.076 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.138 4.138 27 C -0.111 4.111 28 C -0.129 4.129 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.015 0.985 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.404 0.596 39 H 0.407 0.593 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.131 0.869 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 3.395 25.222 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.046 3.954 13 N -0.382 5.382 14 C 0.396 3.604 15 O -0.518 6.518 16 N -0.378 5.378 17 C 0.093 3.907 18 H 0.088 0.912 19 C -0.148 4.148 20 C -0.023 4.023 21 C -0.195 4.195 22 C -0.190 4.190 23 C -0.077 4.077 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.156 4.156 27 C -0.130 4.130 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.240 0.760 39 H 0.244 0.756 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.161 0.839 49 H 0.166 0.834 50 H 0.148 0.852 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.494 2.638 25.153 25.880 hybrid contribution 0.101 -0.458 -1.645 1.710 sum -5.393 2.180 23.508 24.217 Atomic orbital electron populations 1.21647 0.97206 0.98461 1.00288 1.18346 0.93151 0.93116 0.90142 1.21651 0.97910 0.97723 1.00363 1.21302 1.31669 1.12138 0.91622 0.93872 1.25442 0.95130 0.95605 1.00919 1.69915 1.37021 1.23262 1.23546 0.85708 0.78142 0.78741 0.80226 1.20110 1.20693 1.20579 1.21082 0.96596 0.94462 0.83306 1.45202 1.55874 1.33201 1.03925 1.16235 0.80126 0.82692 0.81302 1.90841 1.44986 1.29348 1.86598 1.45114 1.56460 1.32665 1.03566 1.20249 0.96389 0.92824 0.81214 0.91223 1.22830 0.96847 0.97890 0.97212 1.20151 0.94832 0.89580 0.97731 1.21911 0.98967 0.99746 0.98873 1.21810 1.02559 1.02360 0.92311 1.20782 0.94627 0.96241 0.96010 1.20896 0.98156 0.93453 1.00604 1.21377 0.98957 0.95699 0.97239 1.21271 0.95498 1.00372 0.98444 1.20833 0.98783 0.94099 0.99301 1.20988 0.99228 0.94052 0.98734 0.94629 0.91796 0.96618 0.96316 0.91838 0.94463 0.93010 0.94707 0.95119 0.75971 0.75593 0.87864 0.88044 0.89951 0.93707 0.91822 0.91703 0.92633 0.90639 0.83866 0.83387 0.85152 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.51 8.01 25.60 0.21 -28.31 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -48.20 9.35 21.45 0.20 -48.00 16 8 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.56 4.50 86.38 0.39 7.95 16 13 N -0.73 -26.36 4.96 -478.55 -2.37 -28.73 16 14 C 0.70 25.28 8.55 179.05 1.53 26.81 16 15 O -0.64 -28.48 15.86 -3.98 -0.06 -28.54 16 16 N -0.72 -18.99 5.01 -457.76 -2.29 -21.28 16 17 C 0.20 4.83 3.17 45.00 0.14 4.97 16 18 H 0.07 2.04 7.64 -2.38 -0.02 2.02 16 19 C -0.11 -1.65 5.70 31.59 0.18 -1.47 16 20 C -0.02 -0.32 0.88 -52.26 -0.05 -0.37 16 21 C -0.14 -1.72 8.44 71.98 0.61 -1.11 16 22 C -0.13 -1.31 8.30 71.98 0.60 -0.71 16 23 C -0.08 -1.51 4.92 -19.59 -0.10 -1.60 16 24 C -0.11 -2.02 9.78 22.30 0.22 -1.80 16 25 C -0.11 -2.18 10.05 22.24 0.22 -1.95 16 26 C -0.14 -3.30 10.05 22.24 0.22 -3.07 16 27 C -0.11 -3.28 10.04 22.30 0.22 -3.05 16 28 C -0.13 -3.33 5.76 -19.60 -0.11 -3.45 16 29 H 0.03 1.35 6.86 -2.39 -0.02 1.34 16 30 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 34 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 35 H 0.26 13.39 8.31 -92.70 -0.77 12.61 16 36 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.40 12.64 6.18 -92.71 -0.57 12.07 16 39 H 0.41 8.32 6.91 -92.71 -0.64 7.68 16 40 H 0.10 1.23 7.81 -2.38 -0.02 1.21 16 41 H 0.10 1.29 7.92 -2.39 -0.02 1.27 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.04 0.68 6.35 -2.39 -0.02 0.67 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.56 8.00 -2.39 -0.02 0.54 16 46 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.14 1.75 7.92 -2.91 -0.02 1.73 16 49 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 50 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 51 H 0.09 3.28 7.87 -2.91 -0.02 3.26 16 Total: -1.00 -66.23 395.76 3.07 -63.16 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.29 Total: 30.48 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.86 Total: -12.24 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.47 Total: -98.01 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.06 Total: -28.54 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.23 3.07 -63.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458583715.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.534 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds