Wall clock time and date at job start Tue Mar 31 2020 16:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 C 1.50705 * 109.47343 * 120.00518 * 2 1 3 5 5 H 1.08001 * 119.99858 * 115.29668 * 4 2 1 6 6 C 1.37880 * 119.99648 * 295.56982 * 4 2 1 7 7 N 1.31509 * 119.99693 * 199.75520 * 6 4 2 8 8 Si 1.86797 * 119.99979 * 19.74895 * 6 4 2 9 9 H 1.48508 * 109.46891 * 84.62674 * 8 6 4 10 10 H 1.48504 * 109.47180 * 204.62381 * 8 6 4 11 11 H 1.48497 * 109.47427 * 324.62659 * 8 6 4 12 12 C 1.53009 * 109.46974 * 240.00255 * 2 1 3 13 13 N 1.46502 * 109.47022 * 60.00056 * 12 2 1 14 14 C 1.34773 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99967 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99772 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.27074 * 325.70088 * 17 16 14 19 19 C 1.54350 * 110.30165 * 203.62493 * 17 16 14 20 20 C 1.54342 * 102.39271 * 214.73194 * 19 17 16 21 21 C 1.52997 * 110.30526 * 145.27616 * 20 19 17 22 22 C 1.53007 * 110.30410 * 267.32715 * 20 19 17 23 23 C 1.51368 * 105.17184 * 26.34885 * 20 19 17 24 24 C 1.38497 * 130.39489 * 162.81430 * 23 20 19 25 25 C 1.38101 * 120.21783 * 179.97438 * 24 23 20 26 26 C 1.38251 * 119.93346 * 359.97438 * 25 24 23 27 27 C 1.38107 * 119.93543 * 0.02562 * 26 25 24 28 28 C 1.38355 * 120.26053 * 359.90818 * 27 26 25 29 29 H 1.09001 * 109.46906 * 299.99583 * 1 2 3 30 30 H 1.08991 * 109.47097 * 59.99807 * 1 2 3 31 31 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46947 * 188.86076 * 3 2 1 33 33 H 1.08992 * 109.46969 * 308.86436 * 3 2 1 34 34 H 1.09002 * 109.46875 * 68.86975 * 3 2 1 35 35 H 0.97003 * 119.99880 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47000 * 179.97438 * 12 2 1 37 37 H 1.08993 * 109.47091 * 299.99904 * 12 2 1 38 38 H 0.97005 * 119.99816 * 359.97438 * 13 12 2 39 39 H 0.96998 * 120.00038 * 0.02562 * 16 14 13 40 40 H 1.08995 * 110.82277 * 332.95989 * 19 17 16 41 41 H 1.09001 * 110.81686 * 96.50764 * 19 17 16 42 42 H 1.08997 * 109.47307 * 59.99407 * 21 20 19 43 43 H 1.08998 * 109.47160 * 179.97438 * 21 20 19 44 44 H 1.09005 * 109.47065 * 300.00048 * 21 20 19 45 45 H 1.09003 * 109.46978 * 60.00078 * 22 20 19 46 46 H 1.08996 * 109.47163 * 179.97438 * 22 20 19 47 47 H 1.08997 * 109.47081 * 300.00359 * 22 20 19 48 48 H 1.07997 * 119.88889 * 0.02562 * 24 23 20 49 49 H 1.07994 * 120.03304 * 179.97438 * 25 24 23 50 50 H 1.08005 * 120.03655 * 180.02562 * 26 25 24 51 51 H 1.08001 * 119.88911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5892 -1.6308 1.1330 6 6 1.7763 -0.1886 2.4807 7 7 2.5091 -0.5557 3.5091 8 14 0.3886 1.0399 2.7136 9 1 -0.8912 0.3109 2.9034 10 1 0.6637 1.8766 3.9092 11 1 0.2900 1.9088 1.5134 12 6 2.0400 -0.7212 -1.2494 13 7 1.5516 -0.0305 -2.4455 14 6 1.8767 -0.4912 -3.6696 15 8 2.5758 -1.4798 -3.7813 16 7 1.4270 0.1439 -4.7700 17 6 1.7809 -0.3566 -6.1006 18 1 2.7857 -0.7790 -6.0902 19 6 1.6879 0.7788 -7.1420 20 6 1.1918 0.0347 -8.3999 21 6 0.2577 0.9323 -9.2139 22 6 2.3790 -0.4101 -9.2565 23 6 0.4388 -1.1696 -7.8765 24 6 -0.4706 -2.0029 -8.5064 25 6 -1.0393 -3.0571 -7.8191 26 6 -0.7000 -3.2825 -6.4980 27 6 0.2067 -2.4527 -5.8681 28 6 0.7791 -1.3966 -6.5545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1184 1.4466 -0.1583 33 1 1.5531 1.9999 -0.8001 34 1 1.8118 1.9085 0.9586 35 1 2.3287 -0.1889 4.3888 36 1 3.1300 -0.7208 -1.2496 37 1 1.6767 -1.7488 -1.2494 38 1 0.9936 0.7579 -2.3564 39 1 0.8697 0.9328 -4.6809 40 1 0.9669 1.5338 -6.8288 41 1 2.6668 1.2253 -7.3168 42 1 0.7930 1.8310 -9.5201 43 1 -0.0839 0.3942 -10.0981 44 1 -0.6013 1.2113 -8.6035 45 1 3.0159 -1.0777 -8.6762 46 1 2.0137 -0.9338 -10.1398 47 1 2.9532 0.4641 -9.5635 48 1 -0.7353 -1.8281 -9.5388 49 1 -1.7484 -3.7047 -8.3131 50 1 -1.1434 -4.1067 -5.9590 51 1 0.4709 -2.6292 -4.8359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458583723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:39 Heat of formation + Delta-G solvation = -0.680549 kcal Electronic energy + Delta-G solvation = -28861.939523 eV Core-core repulsion = 25147.171335 eV Total energy + Delta-G solvation = -3714.768188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98820 -39.37579 -36.98533 -36.63864 -34.48610 -33.28343 -31.68019 -30.94119 -30.12486 -28.66025 -27.60580 -26.34055 -25.84743 -24.87970 -23.77506 -22.83169 -21.31095 -20.48852 -19.51294 -19.14293 -18.12833 -16.57531 -16.18988 -16.00516 -15.48778 -15.28979 -15.09867 -14.88162 -14.61451 -14.11461 -13.94868 -13.75664 -13.53760 -13.40848 -13.09517 -12.91936 -12.87113 -12.62136 -12.54829 -12.28667 -12.20443 -11.98764 -11.87414 -11.85308 -11.40451 -11.29784 -11.17205 -10.93882 -10.70308 -10.42747 -10.30588 -10.20545 -10.02600 -9.82278 -9.19909 -9.07129 -8.86857 -8.69864 -8.68358 -8.40838 -8.31842 -6.16805 -4.09800 1.23145 1.33475 3.01860 3.24197 3.32297 3.38230 3.53858 3.70357 4.09462 4.21577 4.36528 4.57151 4.64622 4.75483 4.81479 4.93971 4.99960 5.04895 5.14025 5.21494 5.30521 5.33928 5.45871 5.51018 5.53247 5.66206 5.69482 5.74964 5.81461 5.86243 5.89413 6.02025 6.05999 6.08247 6.10673 6.36266 6.38349 6.46849 6.48429 6.50955 6.56613 6.65286 6.69200 6.73998 6.84878 6.92277 7.01695 7.23002 7.28976 7.45653 7.75427 8.33961 8.47938 8.91421 8.96652 9.49826 10.96283 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.002645 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.320103 B =10584.557056 C =10989.968361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 C -0.140 4.140 4 C -0.517 4.517 5 H 0.076 0.924 6 C 0.079 3.921 7 N -0.885 5.885 8 Si 0.875 3.125 9 H -0.285 1.285 10 H -0.303 1.303 11 H -0.246 1.246 12 C 0.161 3.839 13 N -0.738 5.738 14 C 0.698 3.302 15 O -0.593 6.593 16 N -0.745 5.745 17 C 0.205 3.795 18 H 0.102 0.898 19 C -0.117 4.117 20 C -0.023 4.023 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.083 4.083 28 C -0.103 4.103 29 H 0.042 0.958 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.391 0.609 39 H 0.393 0.607 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.122 0.878 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 3.802 -26.736 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 C -0.197 4.197 4 C -0.555 4.555 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.232 1.232 11 H -0.172 1.172 12 C 0.038 3.962 13 N -0.392 5.392 14 C 0.398 3.602 15 O -0.471 6.471 16 N -0.400 5.400 17 C 0.099 3.901 18 H 0.120 0.880 19 C -0.155 4.155 20 C -0.023 4.023 21 C -0.194 4.194 22 C -0.194 4.194 23 C -0.085 4.085 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.101 4.101 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.134 0.866 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.753 2.884 -26.581 27.349 hybrid contribution -1.442 1.192 0.532 1.945 sum -7.195 4.076 -26.049 27.330 Atomic orbital electron populations 1.22349 0.98804 1.00645 0.98513 1.18700 0.91600 0.93068 0.93705 1.22278 1.00211 0.97509 0.99735 1.20680 1.36099 1.10492 0.88188 0.90590 1.24934 0.95684 0.95792 0.95986 1.70017 1.36696 1.44675 1.00730 0.87494 0.83221 0.82081 0.76565 1.21234 1.23171 1.17217 1.21366 0.98440 0.95251 0.81134 1.45515 1.55845 1.33094 1.04791 1.16069 0.80430 0.83051 0.80613 1.90910 1.42869 1.27411 1.85947 1.45212 1.57262 1.33133 1.04437 1.20218 0.97629 0.91526 0.80715 0.87981 1.22747 1.02543 0.96904 0.93317 1.20030 0.94893 0.92332 0.95069 1.21842 0.98941 0.98988 0.99671 1.21836 0.96736 1.01480 0.99314 1.20428 0.96887 0.96722 0.94507 1.20505 0.97407 0.95293 0.99572 1.21019 1.00205 0.97751 0.94781 1.21098 0.98355 0.99637 0.95053 1.20728 0.95471 0.93522 1.00384 1.20918 0.98162 0.96809 0.94544 0.93958 0.95453 0.92994 0.93368 0.96010 0.92698 0.92581 0.92095 0.92347 0.77451 0.77275 0.90125 0.89588 0.92210 0.92413 0.92369 0.92150 0.92329 0.92004 0.86600 0.86138 0.86009 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 7.62 37.16 0.28 -2.66 16 2 C 0.03 0.67 0.50 -155.65 -0.08 0.59 16 3 C -0.14 -2.86 7.51 37.16 0.28 -2.58 16 4 C -0.52 -13.91 8.60 -34.44 -0.30 -14.20 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.20 5.23 -17.82 -0.09 2.11 16 7 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 8 Si 0.87 20.83 22.96 -169.99 -3.90 16.93 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 11 H -0.25 -5.32 4.61 56.52 0.26 -5.06 16 12 C 0.16 3.26 4.49 -4.04 -0.02 3.25 16 13 N -0.74 -12.17 5.01 -65.22 -0.33 -12.50 16 14 C 0.70 11.57 8.14 -86.93 -0.71 10.86 16 15 O -0.59 -12.16 15.63 5.28 0.08 -12.08 16 16 N -0.74 -9.16 5.11 -58.79 -0.30 -9.46 16 17 C 0.20 2.37 3.18 -68.04 -0.22 2.15 16 18 H 0.10 1.38 7.60 -51.93 -0.39 0.99 16 19 C -0.12 -0.95 5.78 -25.32 -0.15 -1.10 16 20 C -0.02 -0.18 0.89 -154.63 -0.14 -0.32 16 21 C -0.14 -0.88 8.30 37.16 0.31 -0.57 16 22 C -0.14 -0.99 8.48 37.16 0.31 -0.67 16 23 C -0.08 -0.87 4.93 -104.15 -0.51 -1.38 16 24 C -0.11 -1.06 9.79 -39.54 -0.39 -1.44 16 25 C -0.12 -1.18 10.05 -39.63 -0.40 -1.58 16 26 C -0.12 -1.42 10.05 -39.62 -0.40 -1.82 16 27 C -0.08 -1.12 9.92 -39.59 -0.39 -1.51 16 28 C -0.10 -1.27 5.79 -104.19 -0.60 -1.87 16 29 H 0.04 0.90 2.60 -51.93 -0.13 0.76 16 30 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 33 H 0.02 0.36 7.12 -51.93 -0.37 -0.01 16 34 H 0.05 1.19 4.04 -51.93 -0.21 0.98 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.39 5.58 6.26 -40.82 -0.26 5.32 16 39 H 0.39 3.80 8.41 -40.82 -0.34 3.46 16 40 H 0.08 0.57 7.58 -51.93 -0.39 0.18 16 41 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.12 0.87 7.99 -52.49 -0.42 0.45 16 49 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 51 H 0.12 1.92 7.31 -52.49 -0.38 1.54 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -31.75 388.16 -9.46 -41.21 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.44 Total: 8.46 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.20 Total: -12.76 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.15 Total: -47.60 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -3.90 Total: 16.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.75 -9.46 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458583723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.529 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds