Wall clock time and date at job start Tue Mar 31 2020 16:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47072 * 2 1 4 4 C 1.50705 * 109.47343 * 120.00518 * 2 1 3 5 5 H 1.08001 * 119.99858 * 115.29668 * 4 2 1 6 6 C 1.37880 * 119.99648 * 295.56982 * 4 2 1 7 7 N 1.31509 * 119.99693 * 199.75520 * 6 4 2 8 8 Si 1.86797 * 119.99979 * 19.74895 * 6 4 2 9 9 H 1.48508 * 109.46891 * 84.62674 * 8 6 4 10 10 H 1.48504 * 109.47180 * 204.62381 * 8 6 4 11 11 H 1.48497 * 109.47427 * 324.62659 * 8 6 4 12 12 C 1.53009 * 109.46974 * 240.00255 * 2 1 3 13 13 N 1.46502 * 109.47022 * 60.00056 * 12 2 1 14 14 C 1.34773 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21593 * 119.99967 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00039 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99772 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.27074 * 325.70088 * 17 16 14 19 19 C 1.54350 * 110.30165 * 203.62493 * 17 16 14 20 20 C 1.54342 * 102.39271 * 214.73194 * 19 17 16 21 21 C 1.52997 * 110.30526 * 145.27616 * 20 19 17 22 22 C 1.53007 * 110.30410 * 267.32715 * 20 19 17 23 23 C 1.51368 * 105.17184 * 26.34885 * 20 19 17 24 24 C 1.38497 * 130.39489 * 162.81430 * 23 20 19 25 25 C 1.38101 * 120.21783 * 179.97438 * 24 23 20 26 26 C 1.38251 * 119.93346 * 359.97438 * 25 24 23 27 27 C 1.38107 * 119.93543 * 0.02562 * 26 25 24 28 28 C 1.38355 * 120.26053 * 359.90818 * 27 26 25 29 29 H 1.09001 * 109.46906 * 299.99583 * 1 2 3 30 30 H 1.08991 * 109.47097 * 59.99807 * 1 2 3 31 31 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46947 * 188.86076 * 3 2 1 33 33 H 1.08992 * 109.46969 * 308.86436 * 3 2 1 34 34 H 1.09002 * 109.46875 * 68.86975 * 3 2 1 35 35 H 0.97003 * 119.99880 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47000 * 179.97438 * 12 2 1 37 37 H 1.08993 * 109.47091 * 299.99904 * 12 2 1 38 38 H 0.97005 * 119.99816 * 359.97438 * 13 12 2 39 39 H 0.96998 * 120.00038 * 0.02562 * 16 14 13 40 40 H 1.08995 * 110.82277 * 332.95989 * 19 17 16 41 41 H 1.09001 * 110.81686 * 96.50764 * 19 17 16 42 42 H 1.08997 * 109.47307 * 59.99407 * 21 20 19 43 43 H 1.08998 * 109.47160 * 179.97438 * 21 20 19 44 44 H 1.09005 * 109.47065 * 300.00048 * 21 20 19 45 45 H 1.09003 * 109.46978 * 60.00078 * 22 20 19 46 46 H 1.08996 * 109.47163 * 179.97438 * 22 20 19 47 47 H 1.08997 * 109.47081 * 300.00359 * 22 20 19 48 48 H 1.07997 * 119.88889 * 0.02562 * 24 23 20 49 49 H 1.07994 * 120.03304 * 179.97438 * 25 24 23 50 50 H 1.08005 * 120.03655 * 180.02562 * 26 25 24 51 51 H 1.08001 * 119.88911 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5892 -1.6308 1.1330 6 6 1.7763 -0.1886 2.4807 7 7 2.5091 -0.5557 3.5091 8 14 0.3886 1.0399 2.7136 9 1 -0.8912 0.3109 2.9034 10 1 0.6637 1.8766 3.9092 11 1 0.2900 1.9088 1.5134 12 6 2.0400 -0.7212 -1.2494 13 7 1.5516 -0.0305 -2.4455 14 6 1.8767 -0.4912 -3.6696 15 8 2.5758 -1.4798 -3.7813 16 7 1.4270 0.1439 -4.7700 17 6 1.7809 -0.3566 -6.1006 18 1 2.7857 -0.7790 -6.0902 19 6 1.6879 0.7788 -7.1420 20 6 1.1918 0.0347 -8.3999 21 6 0.2577 0.9323 -9.2139 22 6 2.3790 -0.4101 -9.2565 23 6 0.4388 -1.1696 -7.8765 24 6 -0.4706 -2.0029 -8.5064 25 6 -1.0393 -3.0571 -7.8191 26 6 -0.7000 -3.2825 -6.4980 27 6 0.2067 -2.4527 -5.8681 28 6 0.7791 -1.3966 -6.5545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1184 1.4466 -0.1583 33 1 1.5531 1.9999 -0.8001 34 1 1.8118 1.9085 0.9586 35 1 2.3287 -0.1889 4.3888 36 1 3.1300 -0.7208 -1.2496 37 1 1.6767 -1.7488 -1.2494 38 1 0.9936 0.7579 -2.3564 39 1 0.8697 0.9328 -4.6809 40 1 0.9669 1.5338 -6.8288 41 1 2.6668 1.2253 -7.3168 42 1 0.7930 1.8310 -9.5201 43 1 -0.0839 0.3942 -10.0981 44 1 -0.6013 1.2113 -8.6035 45 1 3.0159 -1.0777 -8.6762 46 1 2.0137 -0.9338 -10.1398 47 1 2.9532 0.4641 -9.5635 48 1 -0.7353 -1.8281 -9.5388 49 1 -1.7484 -3.7047 -8.3131 50 1 -1.1434 -4.1067 -5.9590 51 1 0.4709 -2.6292 -4.8359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458583723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:38 Heat of formation + Delta-G solvation = -21.156203 kcal Electronic energy + Delta-G solvation = -28862.827414 eV Core-core repulsion = 25147.171335 eV Total energy + Delta-G solvation = -3715.656079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88020 -40.66624 -38.50696 -37.56033 -35.55535 -34.98339 -33.48279 -32.02183 -30.90352 -29.50086 -28.10717 -27.98009 -27.43260 -26.82571 -24.67005 -23.63251 -22.45088 -21.59664 -20.89881 -20.28114 -19.46717 -18.04360 -17.58121 -17.20322 -16.94779 -16.43790 -16.12103 -16.01012 -15.77380 -15.32949 -14.98411 -14.86058 -14.75816 -14.56729 -14.40674 -14.30812 -13.98981 -13.89238 -13.76128 -13.69427 -13.18276 -12.99935 -12.88583 -12.63713 -12.43118 -12.41104 -12.18358 -12.10530 -11.99924 -11.86493 -11.74520 -11.58414 -11.43931 -11.29186 -11.11115 -10.56309 -10.38353 -10.32117 -9.76885 -9.70810 -9.51539 -8.32394 -6.29921 0.39466 0.47094 1.36153 1.39054 1.50234 1.79541 2.19976 2.35138 2.84368 3.02906 3.31689 3.42033 3.55039 3.96340 4.03748 4.09792 4.11004 4.15022 4.25670 4.34737 4.38713 4.42898 4.47521 4.58911 4.68719 4.77878 4.83079 4.85536 4.86768 4.90884 4.92769 4.95644 5.02337 5.03561 5.07648 5.10770 5.17479 5.19460 5.26507 5.36210 5.45132 5.47860 5.49328 5.57883 5.59808 5.64322 5.72846 5.77280 5.81659 6.05594 6.10681 6.31862 6.72633 7.17124 7.32993 7.64860 8.85051 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.002645 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.320103 B =10584.557056 C =10989.968361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.031 3.969 3 C -0.138 4.138 4 C -0.525 4.525 5 H 0.025 0.975 6 C 0.021 3.979 7 N -0.941 5.941 8 Si 0.936 3.064 9 H -0.283 1.283 10 H -0.311 1.311 11 H -0.199 1.199 12 C 0.179 3.821 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.724 5.724 17 C 0.201 3.799 18 H 0.075 0.925 19 C -0.108 4.108 20 C -0.019 4.019 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.082 4.082 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.136 4.136 27 C -0.111 4.111 28 C -0.125 4.125 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.408 0.592 39 H 0.411 0.589 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.145 0.855 49 H 0.148 0.852 50 H 0.128 0.872 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 7.052 -30.597 32.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.563 4.563 5 H 0.044 0.956 6 C -0.177 4.177 7 N -0.579 5.579 8 Si 0.764 3.236 9 H -0.210 1.210 10 H -0.240 1.240 11 H -0.123 1.123 12 C 0.054 3.946 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.519 6.519 16 N -0.379 5.379 17 C 0.095 3.905 18 H 0.093 0.907 19 C -0.146 4.146 20 C -0.020 4.020 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.154 4.154 27 C -0.130 4.130 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.245 0.755 39 H 0.248 0.752 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.163 0.837 49 H 0.166 0.834 50 H 0.146 0.854 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.441 6.183 -30.507 32.251 hybrid contribution -0.525 0.014 1.650 1.731 sum -8.966 6.197 -28.857 30.847 Atomic orbital electron populations 1.22268 0.96640 1.00928 1.00299 1.18618 0.93192 0.93669 0.91526 1.22203 1.00224 0.96302 1.00844 1.20989 1.35298 1.09165 0.90860 0.95638 1.25829 0.98022 0.98442 0.95384 1.70169 1.39034 1.47280 1.01440 0.86502 0.79114 0.80122 0.77856 1.20977 1.24023 1.12255 1.20846 0.96825 0.94464 0.82449 1.45106 1.56057 1.33341 1.03687 1.16198 0.80066 0.82636 0.81324 1.90888 1.44910 1.29538 1.86590 1.45018 1.56391 1.32922 1.03609 1.20365 0.96144 0.93050 0.80894 0.90748 1.22789 1.03960 0.95863 0.91940 1.20080 0.95170 0.91574 0.95166 1.21821 0.98487 0.99208 0.99521 1.21846 0.96382 1.01975 0.99117 1.20759 0.96575 0.97427 0.93489 1.20888 0.96487 0.94527 1.00792 1.21355 1.00150 0.98053 0.93894 1.21257 0.98292 0.99693 0.96198 1.20643 0.97582 0.95452 0.99280 1.21027 0.98771 0.96941 0.95852 0.94368 0.91115 0.93816 0.94271 0.91458 0.93631 0.92617 0.94627 0.94651 0.75537 0.75202 0.88345 0.88205 0.90677 0.91593 0.92570 0.94033 0.91595 0.90234 0.83746 0.83402 0.85389 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.62 71.98 0.55 -4.90 16 2 C 0.03 1.35 0.50 -52.92 -0.03 1.32 16 3 C -0.14 -5.31 7.51 71.98 0.54 -4.77 16 4 C -0.53 -29.46 8.60 25.60 0.22 -29.24 16 5 H 0.03 1.63 7.99 -2.91 -0.02 1.60 16 6 C 0.02 1.22 5.23 84.66 0.44 1.66 16 7 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 8 Si 0.94 42.41 22.96 68.60 1.58 43.98 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 11 H -0.20 -7.54 4.61 99.48 0.46 -7.08 16 12 C 0.18 7.45 4.49 86.38 0.39 7.84 16 13 N -0.73 -23.23 5.01 -478.52 -2.40 -25.62 16 14 C 0.70 23.25 8.14 179.06 1.46 24.71 16 15 O -0.64 -27.56 15.63 -4.01 -0.06 -27.62 16 16 N -0.72 -16.99 5.11 -458.17 -2.34 -19.32 16 17 C 0.20 4.52 3.18 44.92 0.14 4.66 16 18 H 0.07 2.09 7.60 -2.39 -0.02 2.08 16 19 C -0.11 -1.44 5.78 31.51 0.18 -1.26 16 20 C -0.02 -0.25 0.89 -52.26 -0.05 -0.29 16 21 C -0.13 -1.14 8.30 71.98 0.60 -0.54 16 22 C -0.14 -1.60 8.48 71.98 0.61 -0.99 16 23 C -0.08 -1.51 4.93 -19.56 -0.10 -1.60 16 24 C -0.11 -1.79 9.79 22.30 0.22 -1.57 16 25 C -0.12 -2.07 10.05 22.24 0.22 -1.85 16 26 C -0.14 -3.14 10.05 22.24 0.22 -2.91 16 27 C -0.11 -3.14 9.92 22.27 0.22 -2.91 16 28 C -0.12 -3.03 5.79 -19.59 -0.11 -3.15 16 29 H 0.04 1.48 2.60 -2.39 -0.01 1.47 16 30 H 0.07 2.05 6.86 -2.39 -0.02 2.04 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.07 1.96 7.12 -2.39 -0.02 1.95 16 34 H 0.04 1.83 4.04 -2.39 -0.01 1.82 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 10.22 6.26 -92.70 -0.58 9.64 16 39 H 0.41 6.75 8.41 -92.71 -0.78 5.97 16 40 H 0.10 0.99 7.58 -2.39 -0.02 0.98 16 41 H 0.10 1.10 7.90 -2.39 -0.02 1.08 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 44 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.14 1.54 7.99 -2.91 -0.02 1.51 16 49 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 51 H 0.09 3.01 7.31 -2.91 -0.02 2.99 16 Total: -1.00 -75.75 388.16 2.14 -73.61 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.67 Total: 29.19 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 5.73 Total: -15.80 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.44 Total: -103.36 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.06 Total: -27.62 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.58 Total: 43.98 kcal Total: -75.75 2.14 -73.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458583723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.452 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds