Wall clock time and date at job start Tue Mar 31 2020 16:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 C 1.50697 * 109.47118 * 239.99199 * 2 1 3 5 5 H 1.08002 * 120.00222 * 240.00223 * 4 2 1 6 6 C 1.37881 * 119.99823 * 60.00762 * 4 2 1 7 7 N 1.31516 * 119.99713 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47028 * 59.99724 * 8 6 4 10 10 H 1.48497 * 109.47160 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46950 * 299.99887 * 8 6 4 12 12 C 1.53004 * 109.46910 * 119.99722 * 2 1 3 13 13 N 1.46506 * 109.47173 * 299.99841 * 12 2 1 14 14 C 1.34777 * 119.99982 * 180.02562 * 13 12 2 15 15 O 1.21576 * 119.99929 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99636 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99987 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47528 * 174.64346 * 17 16 14 19 19 C 1.52993 * 115.55307 * 80.39875 * 18 17 16 20 20 C 1.53009 * 117.49587 * 294.73255 * 18 17 16 21 21 C 1.53001 * 59.99948 * 252.51206 * 20 18 17 22 22 H 1.08991 * 117.50271 * 107.49401 * 21 20 18 23 23 C 1.50703 * 117.49539 * 252.51355 * 21 20 18 24 24 C 1.38234 * 120.00180 * 8.34800 * 23 21 20 25 25 C 1.38233 * 120.00011 * 179.78925 * 24 23 21 26 26 C 1.38235 * 120.00096 * 0.46545 * 25 24 23 27 27 C 1.38242 * 120.00057 * 359.76427 * 26 25 24 28 28 C 1.38235 * 119.99945 * 188.61923 * 23 21 20 29 29 H 1.09004 * 109.46768 * 60.00071 * 1 2 3 30 30 H 1.08992 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46759 * 300.00834 * 1 2 3 32 32 H 1.08994 * 109.47678 * 59.99606 * 3 2 1 33 33 H 1.08998 * 109.47133 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.46681 * 299.99484 * 3 2 1 35 35 H 0.97002 * 119.99418 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47344 * 59.99643 * 12 2 1 37 37 H 1.08998 * 109.47115 * 179.97438 * 12 2 1 38 38 H 0.96999 * 119.99656 * 0.02562 * 13 12 2 39 39 H 0.97001 * 120.00512 * 359.97438 * 16 14 13 40 40 H 1.08998 * 109.47251 * 294.64259 * 17 16 14 41 41 H 1.09007 * 109.47210 * 54.63861 * 17 16 14 42 42 H 1.09005 * 109.46815 * 66.84770 * 19 18 17 43 43 H 1.08998 * 109.47122 * 186.84374 * 19 18 17 44 44 H 1.09001 * 109.47521 * 306.85032 * 19 18 17 45 45 H 1.08998 * 117.49500 * 0.02562 * 20 18 17 46 46 H 1.08993 * 117.49747 * 144.99651 * 20 18 17 47 47 H 1.07998 * 120.00162 * 359.97438 * 24 23 21 48 48 H 1.07998 * 120.00296 * 180.25130 * 25 24 23 49 49 H 1.07996 * 120.00072 * 179.79418 * 26 25 24 50 50 H 1.07995 * 120.00021 * 180.02562 * 27 26 25 51 51 H 1.08003 * 120.00036 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.8280 -2.5202 -4.0079 10 1 1.8271 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0075 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5765 -1.4791 3.7812 16 7 1.4288 0.1451 4.7699 17 6 1.7826 -0.3553 6.1006 18 6 1.2632 0.6137 7.1647 19 6 -0.2207 0.4790 7.5119 20 6 1.8726 2.0168 7.2001 21 6 2.2207 1.0037 8.2926 22 1 3.2204 0.5699 8.2766 23 6 1.6299 1.2256 9.6611 24 6 0.6750 2.2070 9.8509 25 6 0.1300 2.4076 11.1053 26 6 0.5468 1.6333 12.1719 27 6 1.5051 0.6551 11.9832 28 6 2.0469 0.4515 10.7278 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 0.7090 1.1611 -3.4845 36 1 1.6766 -1.7489 1.2494 37 1 3.1299 -0.7216 1.2491 38 1 0.9937 0.7579 2.3564 39 1 0.8714 0.9340 4.6809 40 1 1.3320 -1.3362 6.2515 41 1 2.8666 -0.4371 6.1816 42 1 -0.3937 -0.4794 8.0013 43 1 -0.5117 1.2873 8.1828 44 1 -0.8139 0.5331 6.5990 45 1 2.6430 2.2495 6.4652 46 1 1.2162 2.8437 7.4709 47 1 0.3527 2.8150 9.0186 48 1 -0.6190 3.1716 11.2528 49 1 0.1234 1.7923 13.1526 50 1 1.8304 0.0499 12.8164 51 1 2.7959 -0.3125 10.5803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458829353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:50 Heat of formation + Delta-G solvation = 8.119587 kcal Electronic energy + Delta-G solvation = -27576.977883 eV Core-core repulsion = 23862.591298 eV Total energy + Delta-G solvation = -3714.386585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47199 -39.46417 -37.95848 -36.37956 -33.98217 -33.18084 -31.37473 -31.11323 -30.60011 -28.84894 -26.78421 -25.69668 -25.40873 -24.38493 -24.13424 -22.73130 -21.03111 -20.36509 -19.54495 -18.73869 -17.98748 -17.22653 -16.07209 -15.81024 -15.63523 -15.35403 -15.18043 -14.74521 -14.61003 -14.35337 -13.93558 -13.75133 -13.53548 -13.37495 -13.25404 -12.99583 -12.82430 -12.57267 -12.48914 -12.15424 -12.13858 -11.67492 -11.34512 -11.29594 -11.16680 -11.09089 -10.82584 -10.73179 -10.70146 -10.35467 -10.23943 -10.17843 -9.73624 -9.60033 -9.28173 -9.22139 -8.93567 -8.81813 -8.76901 -8.38503 -8.14307 -5.99773 -4.09520 0.98284 1.07560 2.95332 3.31870 3.35900 3.37372 3.41351 3.69061 3.73187 4.17452 4.39939 4.44433 4.46053 4.57129 4.66491 4.72654 4.77519 4.85041 4.85348 5.14885 5.26133 5.26887 5.35244 5.50796 5.55063 5.62161 5.67046 5.72859 5.73951 5.77926 5.85929 6.02375 6.16268 6.19562 6.24847 6.31640 6.40054 6.53742 6.66959 6.69156 6.83437 6.85670 6.94378 7.06203 7.13905 7.34982 7.46063 7.58680 7.72162 8.03875 8.15217 8.41119 8.53533 8.90148 9.09505 9.55944 11.01602 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.001829 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.276036 B =15307.393588 C =15618.864480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.750 5.750 17 C 0.179 3.821 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.162 4.162 21 C -0.104 4.104 22 H 0.116 0.884 23 C -0.044 4.044 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.005 0.995 32 H 0.005 0.995 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.260 0.740 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 5.383 26.900 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.407 5.407 17 C 0.054 3.946 18 C -0.126 4.126 19 C -0.178 4.178 20 C -0.198 4.198 21 C -0.123 4.123 22 H 0.134 0.866 23 C -0.044 4.044 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.131 4.131 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.228 0.772 39 H 0.227 0.773 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.241 4.553 26.810 27.286 hybrid contribution -0.170 0.269 -0.858 0.915 sum -2.411 4.822 25.952 26.506 Atomic orbital electron populations 1.21813 0.97780 0.99133 0.99966 1.18365 0.92804 0.92784 0.90578 1.21812 0.98545 0.98359 0.99967 1.20950 1.31435 1.12072 0.89874 0.92478 1.24881 0.94897 0.94950 0.98827 1.69799 1.36683 1.22767 1.23262 0.86630 0.79231 0.79790 0.82177 1.20297 1.21366 1.20295 1.21568 0.97829 0.95394 0.82429 1.45500 1.55614 1.33054 1.04602 1.16063 0.80544 0.82997 0.80686 1.90879 1.43249 1.27802 1.86136 1.45056 1.57597 1.33404 1.04639 1.20517 0.99653 0.95339 0.79052 1.21820 0.95221 0.97458 0.98074 1.21442 0.92115 1.02535 1.01662 1.23249 1.03557 0.92244 1.00800 1.21236 0.99190 1.04531 0.87298 0.86585 1.19100 0.96296 0.95639 0.93364 1.21093 0.97107 0.98158 0.97320 1.21132 1.00014 0.99650 0.92896 1.21149 0.97962 0.96481 0.98918 1.21140 0.97154 0.98231 0.97104 1.21001 1.00354 0.99370 0.92391 0.89674 0.95480 0.97565 0.97561 0.95490 0.89678 0.93000 0.93024 0.93026 0.77236 0.77286 0.91554 0.91477 0.92005 0.91642 0.91818 0.87870 0.88149 0.85784 0.86135 0.86266 0.86101 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 13 N -0.73 -13.31 4.96 -65.22 -0.32 -13.63 16 14 C 0.70 12.53 8.56 -86.92 -0.74 11.79 16 15 O -0.60 -13.28 16.34 5.30 0.09 -13.20 16 16 N -0.75 -9.78 5.52 -65.23 -0.36 -10.14 16 17 C 0.18 2.07 5.58 -4.04 -0.02 2.05 16 18 C -0.13 -1.08 2.11 -154.50 -0.33 -1.41 16 19 C -0.12 -0.98 9.08 37.15 0.34 -0.64 16 20 C -0.16 -1.27 9.23 -26.73 -0.25 -1.51 16 21 C -0.10 -0.85 5.69 -91.77 -0.52 -1.37 16 22 H 0.12 0.93 8.08 -51.93 -0.42 0.51 16 23 C -0.04 -0.36 5.04 -104.62 -0.53 -0.89 16 24 C -0.12 -0.91 7.38 -39.58 -0.29 -1.20 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 28 C -0.11 -0.89 9.74 -39.58 -0.39 -1.28 16 29 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 2.12 6.07 -51.92 -0.32 1.81 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.39 6.37 6.18 -40.82 -0.25 6.12 16 39 H 0.39 4.19 8.49 -40.82 -0.35 3.84 16 40 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.48 5.04 -51.93 -0.26 0.22 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.10 0.68 6.17 -51.93 -0.32 0.36 16 47 H 0.12 0.81 5.32 -52.49 -0.28 0.53 16 48 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 50 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 51 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -29.91 400.40 -11.10 -41.01 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.25 Total: 8.18 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.79 Total: -10.93 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.17 Total: -46.90 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.91 -11.10 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458829353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.130 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds