Wall clock time and date at job start Tue Mar 31 2020 16:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 C 1.50697 * 109.47118 * 239.99199 * 2 1 3 5 5 H 1.08002 * 120.00222 * 240.00223 * 4 2 1 6 6 C 1.37881 * 119.99823 * 60.00762 * 4 2 1 7 7 N 1.31516 * 119.99713 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47028 * 59.99724 * 8 6 4 10 10 H 1.48497 * 109.47160 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46950 * 299.99887 * 8 6 4 12 12 C 1.53004 * 109.46910 * 119.99722 * 2 1 3 13 13 N 1.46506 * 109.47173 * 299.99841 * 12 2 1 14 14 C 1.34777 * 119.99982 * 180.02562 * 13 12 2 15 15 O 1.21576 * 119.99929 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99636 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99987 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47528 * 174.64346 * 17 16 14 19 19 C 1.52993 * 115.55307 * 80.39875 * 18 17 16 20 20 C 1.53009 * 117.49587 * 294.73255 * 18 17 16 21 21 C 1.53001 * 59.99948 * 252.51206 * 20 18 17 22 22 H 1.08991 * 117.50271 * 107.49401 * 21 20 18 23 23 C 1.50703 * 117.49539 * 252.51355 * 21 20 18 24 24 C 1.38234 * 120.00180 * 8.34800 * 23 21 20 25 25 C 1.38233 * 120.00011 * 179.78925 * 24 23 21 26 26 C 1.38235 * 120.00096 * 0.46545 * 25 24 23 27 27 C 1.38242 * 120.00057 * 359.76427 * 26 25 24 28 28 C 1.38235 * 119.99945 * 188.61923 * 23 21 20 29 29 H 1.09004 * 109.46768 * 60.00071 * 1 2 3 30 30 H 1.08992 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46759 * 300.00834 * 1 2 3 32 32 H 1.08994 * 109.47678 * 59.99606 * 3 2 1 33 33 H 1.08998 * 109.47133 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.46681 * 299.99484 * 3 2 1 35 35 H 0.97002 * 119.99418 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47344 * 59.99643 * 12 2 1 37 37 H 1.08998 * 109.47115 * 179.97438 * 12 2 1 38 38 H 0.96999 * 119.99656 * 0.02562 * 13 12 2 39 39 H 0.97001 * 120.00512 * 359.97438 * 16 14 13 40 40 H 1.08998 * 109.47251 * 294.64259 * 17 16 14 41 41 H 1.09007 * 109.47210 * 54.63861 * 17 16 14 42 42 H 1.09005 * 109.46815 * 66.84770 * 19 18 17 43 43 H 1.08998 * 109.47122 * 186.84374 * 19 18 17 44 44 H 1.09001 * 109.47521 * 306.85032 * 19 18 17 45 45 H 1.08998 * 117.49500 * 0.02562 * 20 18 17 46 46 H 1.08993 * 117.49747 * 144.99651 * 20 18 17 47 47 H 1.07998 * 120.00162 * 359.97438 * 24 23 21 48 48 H 1.07998 * 120.00296 * 180.25130 * 25 24 23 49 49 H 1.07996 * 120.00072 * 179.79418 * 26 25 24 50 50 H 1.07995 * 120.00021 * 180.02562 * 27 26 25 51 51 H 1.08003 * 120.00036 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.8280 -2.5202 -4.0079 10 1 1.8271 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0075 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4906 3.6696 15 8 2.5765 -1.4791 3.7812 16 7 1.4288 0.1451 4.7699 17 6 1.7826 -0.3553 6.1006 18 6 1.2632 0.6137 7.1647 19 6 -0.2207 0.4790 7.5119 20 6 1.8726 2.0168 7.2001 21 6 2.2207 1.0037 8.2926 22 1 3.2204 0.5699 8.2766 23 6 1.6299 1.2256 9.6611 24 6 0.6750 2.2070 9.8509 25 6 0.1300 2.4076 11.1053 26 6 0.5468 1.6333 12.1719 27 6 1.5051 0.6551 11.9832 28 6 2.0469 0.4515 10.7278 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 0.7090 1.1611 -3.4845 36 1 1.6766 -1.7489 1.2494 37 1 3.1299 -0.7216 1.2491 38 1 0.9937 0.7579 2.3564 39 1 0.8714 0.9340 4.6809 40 1 1.3320 -1.3362 6.2515 41 1 2.8666 -0.4371 6.1816 42 1 -0.3937 -0.4794 8.0013 43 1 -0.5117 1.2873 8.1828 44 1 -0.8139 0.5331 6.5990 45 1 2.6430 2.2495 6.4652 46 1 1.2162 2.8437 7.4709 47 1 0.3527 2.8150 9.0186 48 1 -0.6190 3.1716 11.2528 49 1 0.1234 1.7923 13.1526 50 1 1.8304 0.0499 12.8164 51 1 2.7959 -0.3125 10.5803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458829353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:49 Heat of formation + Delta-G solvation = -7.131248 kcal Electronic energy + Delta-G solvation = -27577.639209 eV Core-core repulsion = 23862.591298 eV Total energy + Delta-G solvation = -3715.047911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30660 -40.66545 -38.75075 -38.06137 -35.21594 -34.90794 -32.68436 -31.88146 -31.52124 -29.50848 -27.98808 -27.53833 -27.29651 -25.96234 -24.73353 -23.27829 -22.13687 -21.31654 -20.59616 -20.37325 -19.26547 -17.79050 -17.74281 -17.21117 -16.70024 -16.60436 -16.27158 -15.98081 -15.46379 -15.31340 -15.21835 -14.93604 -14.65939 -14.58566 -14.23519 -14.04545 -13.97085 -13.86440 -13.53130 -13.16579 -13.10214 -13.06763 -12.81292 -12.64961 -12.60972 -12.31763 -12.22226 -12.12088 -11.83298 -11.74224 -11.46345 -11.45753 -11.31788 -11.12970 -10.83815 -10.68954 -10.39001 -10.27311 -9.75196 -9.63060 -9.39560 -8.00457 -6.15777 0.43395 0.54531 1.45288 1.46224 1.52799 1.78745 2.23223 2.47241 2.66747 3.09343 3.23008 3.41621 3.56631 3.78897 3.83966 3.96908 4.00623 4.18666 4.24047 4.33578 4.44350 4.55480 4.60727 4.64940 4.70395 4.74293 4.76495 4.86015 4.93958 5.01547 5.02868 5.06088 5.08549 5.11282 5.13494 5.21404 5.21671 5.22638 5.35853 5.40693 5.53326 5.63662 5.65678 5.68079 5.69069 5.69654 5.76076 6.11233 6.16180 6.17618 6.24234 6.45845 6.88045 7.19926 7.51524 7.66683 8.98253 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.001829 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.276036 B =15307.393588 C =15618.864480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.118 4.118 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.169 3.831 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.644 6.644 16 N -0.727 5.727 17 C 0.180 3.820 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.152 4.152 21 C -0.102 4.102 22 H 0.113 0.887 23 C -0.056 4.056 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.127 4.127 28 C -0.129 4.129 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.405 0.595 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.116 0.884 47 H 0.135 0.865 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 6.713 28.428 29.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.396 3.604 15 O -0.527 6.527 16 N -0.384 5.384 17 C 0.055 3.945 18 C -0.124 4.124 19 C -0.174 4.174 20 C -0.189 4.189 21 C -0.121 4.121 22 H 0.131 0.869 23 C -0.056 4.056 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.242 0.758 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.134 0.866 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.190 5.929 28.371 29.159 hybrid contribution 0.121 -0.146 -1.237 1.251 sum -3.069 5.783 27.134 27.913 Atomic orbital electron populations 1.21651 0.97041 0.98591 1.00366 1.18372 0.93328 0.93110 0.90194 1.21648 0.97841 0.97767 1.00370 1.21235 1.31729 1.12167 0.91562 0.93799 1.25446 0.95186 0.95634 1.00911 1.69900 1.36923 1.23240 1.23623 0.85829 0.78606 0.78805 0.79624 1.20335 1.20780 1.20313 1.21102 0.96611 0.94613 0.83280 1.45187 1.55817 1.33239 1.03862 1.16192 0.80210 0.82658 0.81349 1.90854 1.45213 1.29867 1.86764 1.44872 1.56537 1.33112 1.03875 1.20561 0.99081 0.95903 0.78909 1.21623 0.95695 0.97494 0.97607 1.21418 0.91461 1.02617 1.01877 1.23302 1.03296 0.92048 1.00261 1.21236 0.98855 1.04483 0.87506 0.86900 1.19162 0.96944 0.96310 0.93224 1.21261 0.96982 0.98112 0.98030 1.21424 1.00254 1.00005 0.92722 1.21458 0.97702 0.96126 0.99878 1.21398 0.97194 0.98577 0.97325 1.21196 1.00842 0.99754 0.92887 0.91880 0.96446 0.94421 0.94401 0.96428 0.91894 0.93034 0.94813 0.94769 0.75787 0.75407 0.92530 0.92571 0.92699 0.90557 0.91682 0.88275 0.86565 0.84755 0.84355 0.84454 0.84627 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.13 8.01 25.60 0.21 -27.93 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.48 5.15 84.66 0.44 1.92 16 7 N -0.90 -47.82 9.35 21.45 0.20 -47.62 16 8 Si 0.94 42.79 29.54 68.60 2.03 44.82 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.34 4.50 86.38 0.39 7.73 16 13 N -0.73 -25.46 4.96 -478.53 -2.38 -27.84 16 14 C 0.70 24.47 8.56 179.06 1.53 26.00 16 15 O -0.64 -28.66 16.34 -3.96 -0.06 -28.73 16 16 N -0.73 -17.88 5.52 -478.56 -2.64 -20.52 16 17 C 0.18 4.02 5.58 86.38 0.48 4.50 16 18 C -0.12 -1.95 2.11 -52.18 -0.11 -2.06 16 19 C -0.12 -1.68 9.08 71.98 0.65 -1.03 16 20 C -0.15 -2.07 9.23 30.60 0.28 -1.78 16 21 C -0.10 -1.55 5.69 -11.54 -0.07 -1.61 16 22 H 0.11 1.76 8.08 -2.39 -0.02 1.74 16 23 C -0.06 -0.85 5.04 -19.86 -0.10 -0.95 16 24 C -0.13 -1.66 7.38 22.27 0.16 -1.50 16 25 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 26 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 27 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 28 C -0.13 -1.92 9.74 22.27 0.22 -1.70 16 29 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 32 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 35 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.41 12.12 6.18 -92.71 -0.57 11.55 16 39 H 0.41 7.66 8.49 -92.71 -0.79 6.87 16 40 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 41 H 0.06 1.40 7.93 -2.38 -0.02 1.38 16 42 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.08 0.94 5.04 -2.39 -0.01 0.93 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 46 H 0.12 1.23 6.17 -2.39 -0.01 1.21 16 47 H 0.13 1.40 5.32 -2.91 -0.02 1.38 16 48 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 49 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 50 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 51 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -64.34 400.40 2.62 -61.72 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.42 Total: 27.67 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.89 Total: -9.50 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -4.81 Total: -95.98 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.73 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.34 2.62 -61.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458829353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.587 kcal (2) G-P(sol) polarization free energy of solvation -64.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds