Wall clock time and date at job start Tue Mar 31 2020 16:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00202 * 2 1 4 4 O 1.21584 * 120.00329 * 179.97438 * 3 2 1 5 5 N 1.34773 * 119.99870 * 359.97438 * 3 2 1 6 6 C 1.46500 * 120.00120 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47012 * 325.00138 * 6 5 3 8 8 C 1.53000 * 109.47081 * 205.00136 * 6 5 3 9 9 C 1.53001 * 109.47355 * 65.00233 * 8 6 5 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.50696 * 109.46819 * 85.00317 * 6 5 3 19 19 C 1.38231 * 120.00451 * 39.72533 * 18 6 5 20 20 C 1.38236 * 120.00274 * 179.80693 * 19 18 6 21 21 C 1.38233 * 119.99618 * 0.40534 * 20 19 18 22 22 C 1.38237 * 120.00377 * 359.84706 * 21 20 19 23 23 C 1.38234 * 119.99785 * 359.96503 * 22 21 20 24 24 C 1.46500 * 119.99902 * 179.97438 * 2 1 3 25 25 H 1.09003 * 115.55040 * 205.58544 * 24 2 1 26 26 C 1.52997 * 117.50020 * 351.25637 * 24 2 1 27 27 C 1.52998 * 117.50047 * 59.91803 * 24 2 1 28 28 C 1.53006 * 117.49614 * 359.97438 * 27 24 2 29 29 C 1.52995 * 117.50435 * 145.01696 * 27 24 2 30 30 H 1.09002 * 109.46549 * 90.00174 * 1 2 3 31 31 H 1.08999 * 109.47368 * 209.99824 * 1 2 3 32 32 H 1.09002 * 109.47051 * 330.00367 * 1 2 3 33 33 H 0.97005 * 120.00368 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.46966 * 304.99920 * 8 6 5 35 35 H 1.09002 * 109.46807 * 184.99942 * 8 6 5 36 36 H 1.08998 * 109.46837 * 59.99832 * 9 8 6 37 37 H 1.09002 * 109.46926 * 299.99636 * 9 8 6 38 38 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 39 39 H 1.08002 * 119.99676 * 0.02562 * 19 18 6 40 40 H 1.08004 * 120.00151 * 180.23126 * 20 19 18 41 41 H 1.08005 * 119.99796 * 179.83300 * 21 20 19 42 42 H 1.07995 * 119.99727 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.99886 * 180.02562 * 23 22 21 44 44 H 1.09005 * 117.50069 * 214.97867 * 26 24 2 45 45 H 1.09001 * 117.49789 * 359.97438 * 26 24 2 46 46 H 1.08991 * 109.47187 * 60.00066 * 28 27 24 47 47 H 1.09002 * 109.46701 * 180.02562 * 28 27 24 48 48 H 1.09004 * 109.46826 * 299.99890 * 28 27 24 49 49 H 1.09007 * 109.46932 * 59.99822 * 29 27 24 50 50 H 1.09000 * 109.47715 * 179.97438 * 29 27 24 51 51 H 1.09000 * 109.47252 * 300.00816 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1976 3.6031 0.0000 7 1 3.1078 3.4968 0.5902 8 6 1.3199 4.6984 0.6090 9 6 1.0580 4.3817 2.0828 10 6 0.1941 5.4609 2.6827 11 1 -0.1350 6.2900 2.0740 12 6 -0.1763 5.3897 4.0090 13 7 0.2248 4.3803 4.7505 14 14 -1.2409 6.7314 4.7546 15 1 -1.5498 7.7506 3.7197 16 1 -2.5058 6.1376 5.2571 17 1 -0.5137 7.3722 5.8796 18 6 2.5570 3.9762 -1.4151 19 6 1.6512 3.7633 -2.4374 20 6 1.9794 4.1092 -3.7349 21 6 3.2166 4.6603 -4.0113 22 6 4.1244 4.8685 -2.9898 23 6 3.7948 4.5261 -1.6917 24 6 2.1975 -1.2687 0.0006 25 1 3.2007 -1.2322 0.4253 26 6 1.3891 -2.5511 0.2074 27 6 1.9616 -2.2212 -1.1733 28 6 0.9783 -1.7759 -2.2577 29 6 3.1517 -3.0499 -1.6610 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 0.4950 2.3345 -0.0005 34 1 0.3718 4.7442 0.0731 35 1 1.8294 5.6587 0.5288 36 1 2.0061 4.3360 2.6186 37 1 0.5486 3.4214 2.1630 38 1 -0.0361 4.3301 5.6834 39 1 0.6857 3.3299 -2.2218 40 1 1.2702 3.9463 -4.5330 41 1 3.4741 4.9281 -5.0254 42 1 5.0911 5.2987 -3.2059 43 1 4.5038 4.6891 -0.8936 44 1 1.8606 -3.3585 0.7679 45 1 0.3123 -2.4508 0.3435 46 1 1.3289 -0.8468 -2.7067 47 1 0.9096 -2.5473 -3.0248 48 1 -0.0045 -1.6169 -1.8138 49 1 3.5139 -3.6790 -0.8478 50 1 2.8395 -3.6785 -2.4949 51 1 3.9496 -2.3828 -1.9871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458846160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:14 Heat of formation + Delta-G solvation = 16.229430 kcal Electronic energy + Delta-G solvation = -28978.766212 eV Core-core repulsion = 25264.731295 eV Total energy + Delta-G solvation = -3714.034916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40539 -39.21659 -38.05572 -35.61142 -34.32798 -33.09620 -31.22446 -30.62923 -30.31427 -29.15363 -27.82312 -26.76533 -26.40725 -23.69983 -22.59562 -22.15142 -21.03857 -20.22703 -19.70783 -18.93654 -17.94202 -16.85911 -16.43858 -16.15082 -15.60524 -15.22454 -14.99464 -14.48710 -14.41414 -14.16051 -13.84325 -13.69986 -13.49212 -13.17310 -13.09430 -12.98986 -12.79930 -12.65556 -12.46965 -12.27555 -12.17157 -12.06408 -11.70693 -11.66194 -11.19528 -11.10027 -10.98474 -10.90552 -10.66867 -10.59313 -10.51156 -10.00618 -9.95906 -9.71892 -9.56168 -9.14592 -8.75297 -8.67986 -8.40067 -8.37706 -8.16210 -6.02418 -4.05479 1.57725 1.62516 2.76729 3.28596 3.36167 3.36732 3.40382 3.80150 3.98166 4.24414 4.43462 4.56516 4.67921 4.72420 4.96702 5.04484 5.06493 5.09042 5.17209 5.31514 5.33257 5.35447 5.46827 5.53526 5.55050 5.64385 5.70827 5.73907 5.77633 5.79433 5.79752 5.83205 5.92060 5.93584 6.03329 6.16816 6.19122 6.23129 6.38533 6.55940 6.60635 6.67870 6.70518 6.80837 6.98219 7.02811 7.19051 7.23111 7.64943 7.76467 7.97116 8.22649 8.38261 8.91312 9.02022 9.58971 11.08321 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008501 B = 0.003986 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.002156 B = 7023.109253 C = 9492.435711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.714 3.286 4 O -0.588 6.588 5 N -0.725 5.725 6 C 0.199 3.801 7 H 0.093 0.907 8 C -0.112 4.112 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.077 4.077 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.105 4.105 24 C 0.117 3.883 25 H 0.131 0.869 26 C -0.184 4.184 27 C -0.145 4.145 28 C -0.111 4.111 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -11.280 -16.121 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.339 5.339 3 C 0.415 3.585 4 O -0.466 6.466 5 N -0.379 5.379 6 C 0.094 3.906 7 H 0.111 0.889 8 C -0.150 4.150 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.078 4.078 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.124 4.124 24 C 0.011 3.989 25 H 0.149 0.851 26 C -0.221 4.221 27 C -0.147 4.147 28 C -0.169 4.169 29 C -0.169 4.169 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.552 -11.293 -15.914 19.680 hybrid contribution -1.230 0.652 0.569 1.504 sum 1.322 -10.641 -15.346 18.721 Atomic orbital electron populations 1.21948 0.80181 1.03705 1.01602 1.46266 1.05695 1.03832 1.78095 1.15727 0.85227 0.80096 0.77432 1.90880 1.11554 1.86142 1.58006 1.45266 1.09702 1.04136 1.78829 1.19989 0.96835 0.82671 0.91144 0.88872 1.21980 0.97549 0.95768 0.99743 1.19085 0.96993 0.96915 0.88186 1.21272 1.31261 1.08110 0.95357 0.92634 1.25017 0.96284 0.95725 0.97314 1.69985 1.45495 1.30342 1.07346 0.86574 0.80246 0.82145 0.79266 1.19739 1.21079 1.21021 1.20448 0.93872 0.97222 0.96262 1.20870 0.99193 0.99864 0.92455 1.21049 0.96814 0.99920 0.96498 1.21037 0.94391 1.00707 0.98788 1.21067 0.99322 1.00569 0.93009 1.21033 0.96045 0.98615 0.96708 1.21551 0.96958 0.79303 1.01111 0.85147 1.23721 1.00533 0.98714 0.99173 1.22099 0.99432 1.02793 0.90415 1.21366 0.97532 1.00959 0.96994 1.21315 0.96081 0.98619 1.00890 0.92541 0.90562 0.90728 0.76751 0.92663 0.91401 0.96524 0.96398 0.93080 0.86692 0.86666 0.86706 0.86435 0.86018 0.88020 0.88172 0.92320 0.92588 0.92229 0.92431 0.92317 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.54 59.85 0.51 1.26 16 2 N -0.60 -8.49 2.88 -179.67 -0.52 -9.00 16 3 C 0.71 12.55 8.24 -86.92 -0.72 11.83 16 4 O -0.59 -12.40 15.71 5.29 0.08 -12.31 16 5 N -0.72 -11.99 3.63 -59.82 -0.22 -12.20 16 6 C 0.20 3.53 2.17 -69.08 -0.15 3.38 16 7 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 8 C -0.11 -2.20 4.67 -26.73 -0.12 -2.32 16 9 C 0.03 0.63 4.86 -27.89 -0.14 0.49 16 10 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C -0.08 -1.24 4.91 -104.63 -0.51 -1.75 16 19 C -0.11 -1.53 9.33 -39.58 -0.37 -1.90 16 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 23 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 24 C 0.12 1.49 5.92 -67.93 -0.40 1.09 16 25 H 0.13 1.89 7.66 -51.93 -0.40 1.49 16 26 C -0.18 -1.78 9.10 -26.69 -0.24 -2.02 16 27 C -0.15 -1.50 2.70 -154.47 -0.42 -1.92 16 28 C -0.11 -1.07 8.58 37.16 0.32 -0.76 16 29 C -0.11 -1.03 9.85 37.15 0.37 -0.66 16 30 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 31 H 0.08 0.71 5.80 -51.93 -0.30 0.41 16 32 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 33 H 0.40 5.89 6.33 -40.82 -0.26 5.63 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 7.75 -51.93 -0.40 0.06 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.12 1.54 7.71 -52.49 -0.40 1.13 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.78 8.04 -52.49 -0.42 1.36 16 44 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 45 H 0.10 0.89 5.93 -51.93 -0.31 0.58 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 48 H 0.06 0.52 5.64 -51.93 -0.29 0.23 16 49 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 50 H 0.06 0.47 7.93 -51.93 -0.41 0.06 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -32.79 407.43 -11.07 -43.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.41 Total: 7.36 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.86 Total: -14.43 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.00 Total: -46.90 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.79 -11.07 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.091 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds