Wall clock time and date at job start Tue Mar 31 2020 16:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00202 * 2 1 4 4 O 1.21584 * 120.00329 * 179.97438 * 3 2 1 5 5 N 1.34773 * 119.99870 * 359.97438 * 3 2 1 6 6 C 1.46500 * 120.00120 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47012 * 325.00138 * 6 5 3 8 8 C 1.53000 * 109.47081 * 205.00136 * 6 5 3 9 9 C 1.53001 * 109.47355 * 65.00233 * 8 6 5 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.50696 * 109.46819 * 85.00317 * 6 5 3 19 19 C 1.38231 * 120.00451 * 39.72533 * 18 6 5 20 20 C 1.38236 * 120.00274 * 179.80693 * 19 18 6 21 21 C 1.38233 * 119.99618 * 0.40534 * 20 19 18 22 22 C 1.38237 * 120.00377 * 359.84706 * 21 20 19 23 23 C 1.38234 * 119.99785 * 359.96503 * 22 21 20 24 24 C 1.46500 * 119.99902 * 179.97438 * 2 1 3 25 25 H 1.09003 * 115.55040 * 205.58544 * 24 2 1 26 26 C 1.52997 * 117.50020 * 351.25637 * 24 2 1 27 27 C 1.52998 * 117.50047 * 59.91803 * 24 2 1 28 28 C 1.53006 * 117.49614 * 359.97438 * 27 24 2 29 29 C 1.52995 * 117.50435 * 145.01696 * 27 24 2 30 30 H 1.09002 * 109.46549 * 90.00174 * 1 2 3 31 31 H 1.08999 * 109.47368 * 209.99824 * 1 2 3 32 32 H 1.09002 * 109.47051 * 330.00367 * 1 2 3 33 33 H 0.97005 * 120.00368 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.46966 * 304.99920 * 8 6 5 35 35 H 1.09002 * 109.46807 * 184.99942 * 8 6 5 36 36 H 1.08998 * 109.46837 * 59.99832 * 9 8 6 37 37 H 1.09002 * 109.46926 * 299.99636 * 9 8 6 38 38 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 39 39 H 1.08002 * 119.99676 * 0.02562 * 19 18 6 40 40 H 1.08004 * 120.00151 * 180.23126 * 20 19 18 41 41 H 1.08005 * 119.99796 * 179.83300 * 21 20 19 42 42 H 1.07995 * 119.99727 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.99886 * 180.02562 * 23 22 21 44 44 H 1.09005 * 117.50069 * 214.97867 * 26 24 2 45 45 H 1.09001 * 117.49789 * 359.97438 * 26 24 2 46 46 H 1.08991 * 109.47187 * 60.00066 * 28 27 24 47 47 H 1.09002 * 109.46701 * 180.02562 * 28 27 24 48 48 H 1.09004 * 109.46826 * 299.99890 * 28 27 24 49 49 H 1.09007 * 109.46932 * 59.99822 * 29 27 24 50 50 H 1.09000 * 109.47715 * 179.97438 * 29 27 24 51 51 H 1.09000 * 109.47252 * 300.00816 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1976 3.6031 0.0000 7 1 3.1078 3.4968 0.5902 8 6 1.3199 4.6984 0.6090 9 6 1.0580 4.3817 2.0828 10 6 0.1941 5.4609 2.6827 11 1 -0.1350 6.2900 2.0740 12 6 -0.1763 5.3897 4.0090 13 7 0.2248 4.3803 4.7505 14 14 -1.2409 6.7314 4.7546 15 1 -1.5498 7.7506 3.7197 16 1 -2.5058 6.1376 5.2571 17 1 -0.5137 7.3722 5.8796 18 6 2.5570 3.9762 -1.4151 19 6 1.6512 3.7633 -2.4374 20 6 1.9794 4.1092 -3.7349 21 6 3.2166 4.6603 -4.0113 22 6 4.1244 4.8685 -2.9898 23 6 3.7948 4.5261 -1.6917 24 6 2.1975 -1.2687 0.0006 25 1 3.2007 -1.2322 0.4253 26 6 1.3891 -2.5511 0.2074 27 6 1.9616 -2.2212 -1.1733 28 6 0.9783 -1.7759 -2.2577 29 6 3.1517 -3.0499 -1.6610 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 0.4950 2.3345 -0.0005 34 1 0.3718 4.7442 0.0731 35 1 1.8294 5.6587 0.5288 36 1 2.0061 4.3360 2.6186 37 1 0.5486 3.4214 2.1630 38 1 -0.0361 4.3301 5.6834 39 1 0.6857 3.3299 -2.2218 40 1 1.2702 3.9463 -4.5330 41 1 3.4741 4.9281 -5.0254 42 1 5.0911 5.2987 -3.2059 43 1 4.5038 4.6891 -0.8936 44 1 1.8606 -3.3585 0.7679 45 1 0.3123 -2.4508 0.3435 46 1 1.3289 -0.8468 -2.7067 47 1 0.9096 -2.5473 -3.0248 48 1 -0.0045 -1.6169 -1.8138 49 1 3.5139 -3.6790 -0.8478 50 1 2.8395 -3.6785 -2.4949 51 1 3.9496 -2.3828 -1.9871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458846160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:13 Heat of formation + Delta-G solvation = -0.365392 kcal Electronic energy + Delta-G solvation = -28979.485817 eV Core-core repulsion = 25264.731295 eV Total energy + Delta-G solvation = -3714.754522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63583 -40.29443 -39.15128 -37.10925 -35.54415 -35.02974 -32.69094 -31.84825 -31.66822 -30.00552 -28.70764 -28.11170 -27.65496 -25.40725 -23.69328 -23.24638 -22.60669 -21.52413 -20.91464 -19.95313 -19.17373 -18.52950 -17.83044 -17.51915 -16.74480 -16.52759 -16.37762 -16.03753 -15.45809 -15.33694 -14.99591 -14.75815 -14.68630 -14.53496 -14.30176 -14.21832 -13.90607 -13.89214 -13.71654 -13.47066 -13.37205 -13.13627 -12.96923 -12.88562 -12.53276 -12.47308 -12.42983 -12.13586 -11.98859 -11.91835 -11.75536 -11.56892 -11.43463 -11.23383 -11.19335 -10.81827 -10.56382 -10.15655 -9.76886 -9.57124 -9.21892 -8.18836 -6.30263 0.47210 0.54926 1.39869 1.41270 1.53890 1.59314 2.09197 2.41140 2.81315 2.89011 3.05934 3.14620 3.65195 3.82552 3.87093 3.88996 3.98039 4.12352 4.16586 4.19946 4.23395 4.31135 4.35489 4.49937 4.64224 4.66245 4.67536 4.71402 4.77279 4.79126 4.92203 4.94428 4.98484 5.04364 5.05422 5.06047 5.09540 5.18107 5.19150 5.27614 5.42443 5.44954 5.51073 5.53587 5.61050 5.63724 5.67789 5.83729 5.84804 5.97074 6.16064 6.23808 6.86499 6.96290 7.39277 7.57041 8.92563 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008501 B = 0.003986 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.002156 B = 7023.109253 C = 9492.435711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.598 5.598 3 C 0.705 3.295 4 O -0.634 6.634 5 N -0.719 5.719 6 C 0.211 3.789 7 H 0.057 0.943 8 C -0.094 4.094 9 C 0.034 3.966 10 C -0.539 4.539 11 H 0.062 0.938 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.283 1.283 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.130 4.130 24 C 0.076 3.924 25 H 0.102 0.898 26 C -0.158 4.158 27 C -0.136 4.136 28 C -0.110 4.110 29 C -0.112 4.112 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.405 0.595 34 H 0.071 0.929 35 H 0.066 0.934 36 H -0.023 1.023 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -11.561 -18.534 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.332 5.332 3 C 0.406 3.594 4 O -0.515 6.515 5 N -0.374 5.374 6 C 0.105 3.895 7 H 0.075 0.925 8 C -0.131 4.131 9 C -0.003 4.003 10 C -0.577 4.577 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.787 3.213 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.209 1.209 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.029 4.029 25 H 0.119 0.881 26 C -0.195 4.195 27 C -0.138 4.138 28 C -0.167 4.167 29 C -0.169 4.169 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.084 0.916 36 H -0.005 1.005 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.412 -11.594 -18.345 21.706 hybrid contribution -0.521 0.685 1.295 1.555 sum -0.109 -10.910 -17.050 20.242 Atomic orbital electron populations 1.22174 0.78081 1.04294 1.03252 1.46282 1.06939 1.03079 1.76911 1.15963 0.84878 0.81101 0.77430 1.90834 1.13631 1.86903 1.60131 1.45124 1.09956 1.03662 1.78702 1.19601 0.94972 0.82624 0.92302 0.92463 1.21709 0.98662 0.96330 0.96447 1.18917 0.94416 0.95815 0.91149 1.21694 1.31347 1.08690 0.95930 0.91935 1.25947 0.97682 0.98101 0.97895 1.70127 1.46922 1.32463 1.07741 0.85435 0.78307 0.79160 0.78360 1.18421 1.20261 1.20898 1.20276 0.95093 0.99139 0.95316 1.21035 0.99247 1.00092 0.92915 1.21429 0.97615 0.98766 0.96369 1.21477 0.93766 0.99181 1.00067 1.21373 1.00673 1.00014 0.92159 1.21173 0.95977 0.99766 0.97919 1.21623 0.96767 0.79944 1.04614 0.88060 1.23822 1.00979 0.96391 0.98356 1.22209 0.99897 1.01088 0.90633 1.21374 0.97634 1.00570 0.97085 1.21345 0.95253 0.98479 1.01862 0.90244 0.88501 0.91654 0.75760 0.91064 0.91578 1.00459 0.97977 0.92943 0.85863 0.83643 0.83349 0.84095 0.86920 0.86613 0.86646 0.94225 0.90823 0.91054 0.91591 0.90470 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.33 8.54 127.77 1.09 2.42 16 2 N -0.60 -17.25 2.88 -840.62 -2.42 -19.68 16 3 C 0.70 26.34 8.24 179.05 1.48 27.82 16 4 O -0.63 -28.95 15.71 -3.98 -0.06 -29.01 16 5 N -0.72 -25.12 3.63 -461.42 -1.67 -26.79 16 6 C 0.21 8.01 2.17 44.24 0.10 8.11 16 7 H 0.06 2.56 7.44 -2.39 -0.02 2.54 16 8 C -0.09 -3.81 4.67 30.59 0.14 -3.67 16 9 C 0.03 1.78 4.86 29.85 0.15 1.93 16 10 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.09 5.46 84.66 0.46 0.55 16 13 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 14 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 C -0.10 -3.22 4.91 -19.87 -0.10 -3.32 16 19 C -0.11 -3.23 9.33 22.27 0.21 -3.03 16 20 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 21 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 22 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 23 C -0.13 -4.11 9.67 22.27 0.22 -3.90 16 24 C 0.08 1.98 5.92 44.99 0.27 2.25 16 25 H 0.10 3.21 7.66 -2.39 -0.02 3.19 16 26 C -0.16 -2.78 9.10 30.62 0.28 -2.50 16 27 C -0.14 -2.65 2.70 -52.16 -0.14 -2.79 16 28 C -0.11 -1.88 8.58 71.98 0.62 -1.26 16 29 C -0.11 -1.94 9.85 71.98 0.71 -1.23 16 30 H 0.08 1.30 6.40 -2.39 -0.02 1.29 16 31 H 0.10 1.61 5.80 -2.39 -0.01 1.60 16 32 H 0.06 1.49 6.36 -2.39 -0.02 1.47 16 33 H 0.40 12.43 6.33 -92.70 -0.59 11.84 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 37 H 0.00 0.10 7.75 -2.39 -0.02 0.08 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.12 3.16 7.71 -2.91 -0.02 3.14 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.11 3.61 8.04 -2.91 -0.02 3.59 16 44 H 0.12 1.73 8.05 -2.38 -0.02 1.71 16 45 H 0.12 1.69 5.93 -2.39 -0.01 1.68 16 46 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 48 H 0.07 1.04 5.64 -2.39 -0.01 1.02 16 49 H 0.07 1.01 7.90 -2.38 -0.02 0.99 16 50 H 0.08 1.05 7.93 -2.39 -0.02 1.03 16 51 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -74.80 407.43 4.85 -69.95 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.32 Total: 32.77 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 6.37 Total: -16.71 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.81 Total: -102.90 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.06 Total: -29.01 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.80 4.85 -69.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.589 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds