Wall clock time and date at job start Tue Mar 31 2020 16:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99903 * 2 1 4 4 O 1.21589 * 119.99901 * 180.02562 * 3 2 1 5 5 N 1.34770 * 120.00135 * 359.97438 * 3 2 1 6 6 C 1.46504 * 120.00279 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.46713 * 325.00278 * 6 5 3 8 8 C 1.52992 * 109.47404 * 205.00366 * 6 5 3 9 9 C 1.52997 * 109.47508 * 65.00139 * 8 6 5 10 10 C 1.50701 * 109.47544 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99639 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00134 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00106 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47014 * 60.00175 * 14 12 10 16 16 H 1.48500 * 109.47398 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47148 * 300.00513 * 14 12 10 18 18 C 1.50704 * 109.46819 * 84.99933 * 6 5 3 19 19 C 1.38229 * 119.99927 * 39.73523 * 18 6 5 20 20 C 1.38235 * 120.00075 * 179.76374 * 19 18 6 21 21 C 1.38240 * 119.99794 * 0.50240 * 20 19 18 22 22 C 1.38234 * 119.99525 * 359.74903 * 21 20 19 23 23 C 1.38231 * 120.00762 * 359.97438 * 22 21 20 24 24 C 1.46500 * 120.00175 * 180.02562 * 2 1 3 25 25 H 1.08995 * 115.55052 * 148.99375 * 24 2 1 26 26 C 1.53003 * 117.49563 * 3.32407 * 24 2 1 27 27 C 1.52998 * 59.99921 * 252.51323 * 26 24 2 28 28 C 1.53008 * 117.50033 * 252.51336 * 27 26 24 29 29 C 1.52993 * 117.50241 * 107.49265 * 27 26 24 30 30 H 1.08998 * 109.47233 * 90.47024 * 1 2 3 31 31 H 1.09004 * 109.47135 * 210.47125 * 1 2 3 32 32 H 1.09001 * 109.47034 * 330.46998 * 1 2 3 33 33 H 0.96997 * 120.00336 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47473 * 184.99908 * 8 6 5 35 35 H 1.09003 * 109.47436 * 304.99810 * 8 6 5 36 36 H 1.09009 * 109.47044 * 300.00317 * 9 8 6 37 37 H 1.08996 * 109.47203 * 59.99747 * 9 8 6 38 38 H 0.97001 * 120.00020 * 179.97438 * 13 12 10 39 39 H 1.08001 * 120.00180 * 359.97438 * 19 18 6 40 40 H 1.07996 * 120.00473 * 180.22452 * 20 19 18 41 41 H 1.07997 * 120.00147 * 179.72298 * 21 20 19 42 42 H 1.08010 * 119.99663 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00493 * 179.97438 * 23 22 21 44 44 H 1.09001 * 117.50180 * 359.97438 * 26 24 2 45 45 H 1.09000 * 117.49960 * 145.02557 * 26 24 2 46 46 H 1.08994 * 109.47229 * 128.61877 * 28 27 26 47 47 H 1.08995 * 109.47128 * 248.62388 * 28 27 26 48 48 H 1.09008 * 109.46637 * 8.61797 * 28 27 26 49 49 H 1.09001 * 109.47389 * 359.49113 * 29 27 26 50 50 H 1.09003 * 109.47434 * 119.49231 * 29 27 26 51 51 H 1.09009 * 109.47720 * 239.49285 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 0.0000 7 1 3.1078 3.4969 0.5902 8 6 1.3199 4.6984 0.6090 9 6 1.0580 4.3817 2.0828 10 6 0.1931 5.4603 2.6825 11 1 -0.1366 6.2890 2.0734 12 6 -0.1775 5.3890 4.0086 13 7 0.2244 4.3800 4.7504 14 14 -1.2490 6.7263 4.7521 15 1 -2.5404 6.7890 4.0217 16 1 -1.5032 6.4188 6.1825 17 1 -0.5548 8.0345 4.6433 18 6 2.5569 3.9762 -1.4151 19 6 1.6511 3.7634 -2.4373 20 6 1.9789 4.1101 -3.7347 21 6 3.2167 4.6601 -4.0114 22 6 4.1244 4.8681 -2.9899 23 6 3.7945 4.5267 -1.6917 24 6 2.1975 -1.2687 -0.0006 25 1 3.1625 -1.2542 -0.5071 26 6 1.3773 -2.5579 -0.0798 27 6 2.0595 -2.1646 1.2320 28 6 3.2870 -2.9717 1.6597 29 6 1.1672 -1.6670 2.3708 30 1 -0.3633 -0.0084 -1.0276 31 1 -0.3633 -0.8858 0.5212 32 1 -0.3633 0.8942 0.5065 33 1 0.4950 2.3344 -0.0005 34 1 1.8292 5.6587 0.5288 35 1 0.3717 4.7443 0.0732 36 1 0.5486 3.4213 2.1631 37 1 2.0061 4.3359 2.6186 38 1 -0.0360 4.3301 5.6834 39 1 0.6859 3.3294 -2.2219 40 1 1.2698 3.9472 -4.5329 41 1 3.4745 4.9268 -5.0257 42 1 5.0917 5.2974 -3.2061 43 1 4.5039 4.6888 -0.8937 44 1 0.2927 -2.4621 -0.1311 45 1 1.8030 -3.3917 -0.6382 46 1 4.1074 -2.2916 1.8883 47 1 3.0448 -3.5596 2.5450 48 1 3.5830 -3.6391 0.8502 49 1 0.1276 -1.6640 2.0431 50 1 1.2748 -2.3268 3.2317 51 1 1.4632 -0.6554 2.6490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458846164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:20 Heat of formation + Delta-G solvation = 15.793424 kcal Electronic energy + Delta-G solvation = -28985.366048 eV Core-core repulsion = 25271.312225 eV Total energy + Delta-G solvation = -3714.053823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38711 -39.20357 -38.02665 -35.60262 -34.32052 -33.09109 -31.21437 -30.62729 -30.31255 -29.01870 -27.68974 -26.77782 -26.40238 -23.69583 -22.58904 -22.14698 -21.03402 -20.21851 -19.70437 -18.87319 -17.89956 -16.86177 -16.40508 -16.14785 -15.62915 -15.14317 -15.02314 -14.48594 -14.31580 -14.13306 -13.71531 -13.68303 -13.40204 -13.22314 -13.13335 -12.91864 -12.84658 -12.58277 -12.45932 -12.16206 -12.09338 -12.04878 -11.79093 -11.68065 -11.10009 -11.05995 -10.94986 -10.90808 -10.62648 -10.57367 -10.49210 -9.99386 -9.89867 -9.70490 -9.55434 -9.16994 -8.74943 -8.67853 -8.40127 -8.36855 -8.16762 -6.01932 -4.05168 1.57782 1.62585 2.77813 3.31001 3.36106 3.38206 3.39409 3.81462 3.97976 4.24902 4.43628 4.61910 4.70332 4.78430 5.03246 5.06340 5.08836 5.09300 5.17388 5.32225 5.33572 5.40602 5.49744 5.57681 5.63089 5.65448 5.70983 5.72712 5.80219 5.89453 5.90510 5.93694 5.94531 5.99100 6.16946 6.18260 6.23264 6.35241 6.38831 6.56480 6.61003 6.68009 6.70637 6.81170 6.98412 7.03268 7.19471 7.23313 7.64579 7.76654 7.97324 8.23624 8.38444 8.92415 9.01766 9.59163 11.08712 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004684 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.254434 B = 5976.324866 C = 9258.910557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.604 5.604 3 C 0.713 3.287 4 O -0.588 6.588 5 N -0.725 5.725 6 C 0.199 3.801 7 H 0.093 0.907 8 C -0.113 4.113 9 C 0.026 3.974 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.077 4.077 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.106 4.106 24 C 0.115 3.885 25 H 0.127 0.873 26 C -0.182 4.182 27 C -0.141 4.141 28 C -0.112 4.112 29 C -0.113 4.113 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -11.262 -13.802 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C 0.415 3.585 4 O -0.466 6.466 5 N -0.380 5.380 6 C 0.094 3.906 7 H 0.111 0.889 8 C -0.151 4.151 9 C -0.011 4.011 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.078 4.078 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.124 4.124 24 C 0.009 3.991 25 H 0.145 0.855 26 C -0.220 4.220 27 C -0.144 4.144 28 C -0.169 4.169 29 C -0.170 4.170 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.654 -11.287 -13.610 17.879 hybrid contribution -1.245 0.684 0.479 1.499 sum 1.409 -10.604 -13.131 16.936 Atomic orbital electron populations 1.21894 0.80163 1.03693 1.01549 1.46279 1.05675 1.03824 1.78187 1.15736 0.85235 0.80094 0.77466 1.90883 1.11547 1.86149 1.57976 1.45265 1.09696 1.04141 1.78865 1.19986 0.96828 0.82679 0.91126 0.88884 1.21978 0.97548 0.95771 0.99757 1.19070 0.96949 0.96879 0.88164 1.21196 1.31394 1.08190 0.95373 0.92754 1.25000 0.96247 0.95701 0.97280 1.69964 1.45478 1.30321 1.07411 0.86692 0.80972 0.82411 0.78119 1.20294 1.21328 1.20239 1.20454 0.93879 0.97221 0.96276 1.20877 0.99213 0.99854 0.92461 1.21053 0.96816 0.99912 0.96507 1.21039 0.94383 1.00720 0.98790 1.21069 0.99324 1.00581 0.93008 1.21033 0.96050 0.98616 0.96707 1.21517 0.96926 0.79648 1.01015 0.85507 1.23719 0.99644 0.97932 1.00699 1.22095 0.99186 1.02507 0.90561 1.21335 0.95833 0.98759 1.01012 1.21345 0.97779 1.01689 0.96192 0.92809 0.90484 0.90752 0.76763 0.91412 0.92668 0.96430 0.96545 0.92973 0.86663 0.86651 0.86698 0.86432 0.86013 0.88316 0.88141 0.91870 0.92191 0.92607 0.92536 0.92352 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.08 59.84 0.54 1.31 16 2 N -0.60 -8.50 2.79 -179.67 -0.50 -9.01 16 3 C 0.71 12.54 8.24 -86.92 -0.72 11.83 16 4 O -0.59 -12.41 15.79 5.29 0.08 -12.32 16 5 N -0.72 -12.01 3.63 -59.81 -0.22 -12.22 16 6 C 0.20 3.54 2.17 -69.08 -0.15 3.39 16 7 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 8 C -0.11 -2.20 4.67 -26.74 -0.12 -2.33 16 9 C 0.03 0.65 4.86 -27.88 -0.14 0.52 16 10 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 11 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.08 -1.24 4.91 -104.62 -0.51 -1.76 16 19 C -0.11 -1.54 9.33 -39.59 -0.37 -1.91 16 20 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 21 C -0.13 -1.65 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 24 C 0.11 1.47 5.84 -67.93 -0.40 1.08 16 25 H 0.13 1.78 7.79 -51.93 -0.40 1.38 16 26 C -0.18 -1.75 9.09 -26.73 -0.24 -2.00 16 27 C -0.14 -1.62 2.70 -154.51 -0.42 -2.04 16 28 C -0.11 -1.15 9.84 37.16 0.37 -0.78 16 29 C -0.11 -1.38 8.74 37.15 0.32 -1.05 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.74 4.06 -51.93 -0.21 0.52 16 32 H 0.07 0.86 6.34 -51.93 -0.33 0.53 16 33 H 0.40 5.90 6.32 -40.82 -0.26 5.64 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.45 7.75 -51.92 -0.40 0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 1.55 7.71 -52.49 -0.40 1.14 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.12 1.79 8.04 -52.49 -0.42 1.36 16 44 H 0.10 0.86 6.20 -51.93 -0.32 0.54 16 45 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 48 H 0.05 0.49 7.90 -51.92 -0.41 0.08 16 49 H 0.06 0.62 5.94 -51.93 -0.31 0.31 16 50 H 0.06 0.65 7.81 -51.93 -0.41 0.24 16 51 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -32.59 408.49 -11.02 -43.61 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.44 Total: 8.03 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -3.82 Total: -14.90 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.02 Total: -46.84 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.59 -11.02 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds