Wall clock time and date at job start Tue Mar 31 2020 16:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99903 * 2 1 4 4 O 1.21589 * 119.99901 * 180.02562 * 3 2 1 5 5 N 1.34770 * 120.00135 * 359.97438 * 3 2 1 6 6 C 1.46504 * 120.00279 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.46713 * 325.00278 * 6 5 3 8 8 C 1.52992 * 109.47404 * 205.00366 * 6 5 3 9 9 C 1.52997 * 109.47508 * 65.00139 * 8 6 5 10 10 C 1.50701 * 109.47544 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99639 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00134 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00066 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00106 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47014 * 60.00175 * 14 12 10 16 16 H 1.48500 * 109.47398 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47148 * 300.00513 * 14 12 10 18 18 C 1.50704 * 109.46819 * 84.99933 * 6 5 3 19 19 C 1.38229 * 119.99927 * 39.73523 * 18 6 5 20 20 C 1.38235 * 120.00075 * 179.76374 * 19 18 6 21 21 C 1.38240 * 119.99794 * 0.50240 * 20 19 18 22 22 C 1.38234 * 119.99525 * 359.74903 * 21 20 19 23 23 C 1.38231 * 120.00762 * 359.97438 * 22 21 20 24 24 C 1.46500 * 120.00175 * 180.02562 * 2 1 3 25 25 H 1.08995 * 115.55052 * 148.99375 * 24 2 1 26 26 C 1.53003 * 117.49563 * 3.32407 * 24 2 1 27 27 C 1.52998 * 59.99921 * 252.51323 * 26 24 2 28 28 C 1.53008 * 117.50033 * 252.51336 * 27 26 24 29 29 C 1.52993 * 117.50241 * 107.49265 * 27 26 24 30 30 H 1.08998 * 109.47233 * 90.47024 * 1 2 3 31 31 H 1.09004 * 109.47135 * 210.47125 * 1 2 3 32 32 H 1.09001 * 109.47034 * 330.46998 * 1 2 3 33 33 H 0.96997 * 120.00336 * 0.02562 * 5 3 2 34 34 H 1.08998 * 109.47473 * 184.99908 * 8 6 5 35 35 H 1.09003 * 109.47436 * 304.99810 * 8 6 5 36 36 H 1.09009 * 109.47044 * 300.00317 * 9 8 6 37 37 H 1.08996 * 109.47203 * 59.99747 * 9 8 6 38 38 H 0.97001 * 120.00020 * 179.97438 * 13 12 10 39 39 H 1.08001 * 120.00180 * 359.97438 * 19 18 6 40 40 H 1.07996 * 120.00473 * 180.22452 * 20 19 18 41 41 H 1.07997 * 120.00147 * 179.72298 * 21 20 19 42 42 H 1.08010 * 119.99663 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00493 * 179.97438 * 23 22 21 44 44 H 1.09001 * 117.50180 * 359.97438 * 26 24 2 45 45 H 1.09000 * 117.49960 * 145.02557 * 26 24 2 46 46 H 1.08994 * 109.47229 * 128.61877 * 28 27 26 47 47 H 1.08995 * 109.47128 * 248.62388 * 28 27 26 48 48 H 1.09008 * 109.46637 * 8.61797 * 28 27 26 49 49 H 1.09001 * 109.47389 * 359.49113 * 29 27 26 50 50 H 1.09003 * 109.47434 * 119.49231 * 29 27 26 51 51 H 1.09009 * 109.47720 * 239.49285 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 0.0000 7 1 3.1078 3.4969 0.5902 8 6 1.3199 4.6984 0.6090 9 6 1.0580 4.3817 2.0828 10 6 0.1931 5.4603 2.6825 11 1 -0.1366 6.2890 2.0734 12 6 -0.1775 5.3890 4.0086 13 7 0.2244 4.3800 4.7504 14 14 -1.2490 6.7263 4.7521 15 1 -2.5404 6.7890 4.0217 16 1 -1.5032 6.4188 6.1825 17 1 -0.5548 8.0345 4.6433 18 6 2.5569 3.9762 -1.4151 19 6 1.6511 3.7634 -2.4373 20 6 1.9789 4.1101 -3.7347 21 6 3.2167 4.6601 -4.0114 22 6 4.1244 4.8681 -2.9899 23 6 3.7945 4.5267 -1.6917 24 6 2.1975 -1.2687 -0.0006 25 1 3.1625 -1.2542 -0.5071 26 6 1.3773 -2.5579 -0.0798 27 6 2.0595 -2.1646 1.2320 28 6 3.2870 -2.9717 1.6597 29 6 1.1672 -1.6670 2.3708 30 1 -0.3633 -0.0084 -1.0276 31 1 -0.3633 -0.8858 0.5212 32 1 -0.3633 0.8942 0.5065 33 1 0.4950 2.3344 -0.0005 34 1 1.8292 5.6587 0.5288 35 1 0.3717 4.7443 0.0732 36 1 0.5486 3.4213 2.1631 37 1 2.0061 4.3359 2.6186 38 1 -0.0360 4.3301 5.6834 39 1 0.6859 3.3294 -2.2219 40 1 1.2698 3.9472 -4.5329 41 1 3.4745 4.9268 -5.0257 42 1 5.0917 5.2974 -3.2061 43 1 4.5039 4.6888 -0.8937 44 1 0.2927 -2.4621 -0.1311 45 1 1.8030 -3.3917 -0.6382 46 1 4.1074 -2.2916 1.8883 47 1 3.0448 -3.5596 2.5450 48 1 3.5830 -3.6391 0.8502 49 1 0.1276 -1.6640 2.0431 50 1 1.2748 -2.3268 3.2317 51 1 1.4632 -0.6554 2.6490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458846164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:19 Heat of formation + Delta-G solvation = -0.625965 kcal Electronic energy + Delta-G solvation = -28986.078046 eV Core-core repulsion = 25271.312225 eV Total energy + Delta-G solvation = -3714.765821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63232 -40.29615 -39.14916 -37.10759 -35.55495 -35.03119 -32.69275 -31.84893 -31.66941 -29.97701 -28.67504 -28.11848 -27.72395 -25.40612 -23.68856 -23.24324 -22.60687 -21.52329 -20.92811 -19.96527 -19.12909 -18.52783 -17.85237 -17.45941 -16.85094 -16.55643 -16.27338 -16.08321 -15.36982 -15.31713 -15.04964 -14.72948 -14.69526 -14.55878 -14.23995 -14.18816 -14.02714 -13.83076 -13.74499 -13.56380 -13.38887 -13.07966 -13.05643 -12.83398 -12.59320 -12.54634 -12.46131 -12.14626 -11.98159 -11.91426 -11.74691 -11.49663 -11.43279 -11.23015 -11.21043 -10.82430 -10.55031 -10.15792 -9.76935 -9.57374 -9.24863 -8.18367 -6.30150 0.47150 0.54911 1.40608 1.43223 1.51012 1.59592 2.10435 2.41304 2.82164 2.86709 3.05561 3.14861 3.65868 3.81895 3.84713 3.89359 3.98026 4.10478 4.16675 4.18282 4.23434 4.31277 4.35272 4.52773 4.62704 4.64698 4.67440 4.68430 4.75619 4.78116 4.90687 4.92805 4.98104 5.02386 5.05559 5.05640 5.09389 5.17995 5.19126 5.26852 5.40360 5.44951 5.50441 5.52785 5.61108 5.63756 5.67497 5.83508 5.84489 5.96774 6.16074 6.23672 6.86079 6.96493 7.39380 7.57481 8.92577 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.006779 B = 0.004684 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4129.254434 B = 5976.324866 C = 9258.910557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.705 3.295 4 O -0.633 6.633 5 N -0.719 5.719 6 C 0.211 3.789 7 H 0.056 0.944 8 C -0.094 4.094 9 C 0.036 3.964 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.263 1.263 16 H -0.286 1.286 17 H -0.270 1.270 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.130 4.130 24 C 0.081 3.919 25 H 0.108 0.892 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.111 4.111 29 C -0.110 4.110 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.001 0.999 37 H -0.024 1.024 38 H 0.262 0.738 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -11.697 -16.292 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.333 5.333 3 C 0.406 3.594 4 O -0.514 6.514 5 N -0.375 5.375 6 C 0.105 3.895 7 H 0.075 0.925 8 C -0.132 4.132 9 C -0.001 4.001 10 C -0.579 4.579 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.188 1.188 16 H -0.211 1.211 17 H -0.195 1.195 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.024 4.024 25 H 0.125 0.875 26 C -0.179 4.179 27 C -0.153 4.153 28 C -0.168 4.168 29 C -0.167 4.167 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.019 0.981 37 H -0.006 1.006 38 H 0.071 0.929 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.142 0.858 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.566 -11.739 -16.116 19.946 hybrid contribution -0.561 0.778 1.241 1.569 sum 0.006 -10.961 -14.875 18.477 Atomic orbital electron populations 1.22109 0.78075 1.04109 1.03329 1.46307 1.06936 1.03112 1.76942 1.15974 0.84888 0.81103 0.77425 1.90836 1.13608 1.86912 1.60086 1.45125 1.09951 1.03687 1.78726 1.19595 0.94935 0.82633 0.92306 0.92543 1.21709 0.98669 0.96338 0.96455 1.18898 0.94345 0.95772 0.91134 1.21635 1.31499 1.08800 0.95977 0.91928 1.25930 0.97637 0.98055 0.97841 1.70117 1.46896 1.32455 1.07728 0.85554 0.79414 0.79247 0.77153 1.18768 1.21148 1.19501 1.20277 0.95113 0.99159 0.95300 1.21042 0.99264 1.00100 0.92922 1.21434 0.97622 0.98749 0.96369 1.21480 0.93750 0.99173 1.00074 1.21376 1.00683 1.00011 0.92144 1.21169 0.95972 0.99770 0.97922 1.21629 0.97529 0.80332 1.02920 0.87453 1.23809 1.00213 0.95791 0.98073 1.22172 0.99990 1.02457 0.90689 1.21342 0.94666 0.98535 1.02269 1.21306 0.98743 0.99490 0.97152 0.90229 0.88650 0.91771 0.75783 0.91586 0.91055 0.98068 1.00554 0.92946 0.85827 0.83611 0.83322 0.84081 0.86941 0.86603 0.85759 0.94083 0.91048 0.90699 0.91043 0.91314 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.08 127.77 1.16 2.53 16 2 N -0.60 -17.23 2.79 -840.62 -2.35 -19.58 16 3 C 0.70 26.34 8.24 179.06 1.48 27.82 16 4 O -0.63 -28.91 15.79 -4.00 -0.06 -28.97 16 5 N -0.72 -25.23 3.63 -461.41 -1.67 -26.90 16 6 C 0.21 8.05 2.17 44.24 0.10 8.15 16 7 H 0.06 2.54 7.44 -2.38 -0.02 2.52 16 8 C -0.09 -3.84 4.67 30.59 0.14 -3.69 16 9 C 0.04 1.87 4.86 29.85 0.15 2.01 16 10 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 14 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.10 -3.24 4.91 -19.87 -0.10 -3.33 16 19 C -0.12 -3.25 9.33 22.27 0.21 -3.04 16 20 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 22 C -0.12 -3.15 10.05 22.27 0.22 -2.93 16 23 C -0.13 -4.11 9.67 22.27 0.22 -3.90 16 24 C 0.08 2.09 5.84 44.99 0.26 2.35 16 25 H 0.11 3.17 7.79 -2.39 -0.02 3.15 16 26 C -0.14 -2.35 9.09 30.59 0.28 -2.07 16 27 C -0.15 -3.38 2.70 -52.18 -0.14 -3.52 16 28 C -0.11 -2.23 9.84 71.98 0.71 -1.52 16 29 C -0.11 -2.69 8.74 71.98 0.63 -2.06 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.62 4.06 -2.38 -0.01 1.61 16 32 H 0.06 1.48 6.34 -2.39 -0.02 1.46 16 33 H 0.40 12.49 6.32 -92.71 -0.59 11.91 16 34 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.00 0.05 7.75 -2.38 -0.02 0.03 16 37 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.12 3.17 7.71 -2.91 -0.02 3.15 16 40 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.11 3.61 8.04 -2.91 -0.02 3.59 16 44 H 0.12 1.56 6.20 -2.39 -0.01 1.55 16 45 H 0.12 1.54 8.05 -2.39 -0.02 1.52 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.25 7.86 -2.39 -0.02 1.23 16 48 H 0.07 1.19 7.90 -2.38 -0.02 1.18 16 49 H 0.07 1.48 5.94 -2.39 -0.01 1.46 16 50 H 0.07 1.50 7.81 -2.39 -0.02 1.48 16 51 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -75.06 408.49 5.00 -70.06 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.32 Total: 33.85 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 6.45 Total: -17.84 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.74 Total: -102.96 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.06 Total: -28.97 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.06 5.00 -70.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.433 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds