Wall clock time and date at job start Tue Mar 31 2020 16:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00094 * 2 1 4 4 O 1.21588 * 119.99860 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99868 * 359.97438 * 3 2 1 6 6 C 1.46498 * 119.99976 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47214 * 35.00414 * 6 5 3 8 8 C 1.52997 * 109.46964 * 155.00496 * 6 5 3 9 9 C 1.53001 * 109.47178 * 294.99863 * 8 6 5 10 10 C 1.50695 * 109.47261 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00311 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00336 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99843 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00294 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47378 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46883 * 120.00785 * 14 12 10 17 17 H 1.48500 * 109.47501 * 240.00571 * 14 12 10 18 18 C 1.50700 * 109.47272 * 275.00357 * 6 5 3 19 19 C 1.38230 * 119.99998 * 139.99781 * 18 6 5 20 20 C 1.38232 * 120.00144 * 180.02562 * 19 18 6 21 21 C 1.38237 * 120.00075 * 0.25542 * 20 19 18 22 22 C 1.38238 * 119.99686 * 359.48944 * 21 20 19 23 23 C 1.38236 * 119.99949 * 319.98112 * 18 6 5 24 24 C 1.46508 * 120.00198 * 179.97438 * 2 1 3 25 25 H 1.09001 * 115.54779 * 148.99526 * 24 2 1 26 26 C 1.52997 * 117.49725 * 3.33105 * 24 2 1 27 27 C 1.53000 * 117.49823 * 294.70688 * 24 2 1 28 28 C 1.52994 * 117.49677 * 214.97796 * 27 24 2 29 29 C 1.52997 * 117.50062 * 359.97438 * 27 24 2 30 30 H 1.09003 * 109.46616 * 90.47710 * 1 2 3 31 31 H 1.08997 * 109.46892 * 210.47113 * 1 2 3 32 32 H 1.08995 * 109.47259 * 330.47830 * 1 2 3 33 33 H 0.97001 * 119.99740 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.47138 * 55.00164 * 8 6 5 35 35 H 1.09007 * 109.47089 * 175.00064 * 8 6 5 36 36 H 1.08995 * 109.47332 * 300.00183 * 9 8 6 37 37 H 1.09007 * 109.46946 * 60.00113 * 9 8 6 38 38 H 0.96999 * 120.00010 * 179.97438 * 13 12 10 39 39 H 1.08002 * 120.00210 * 359.97438 * 19 18 6 40 40 H 1.08007 * 120.00139 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.00016 * 179.72694 * 21 20 19 42 42 H 1.07994 * 119.99995 * 180.25056 * 22 21 20 43 43 H 1.07997 * 120.00093 * 359.97438 * 23 18 6 44 44 H 1.09009 * 117.49622 * 359.97438 * 26 24 2 45 45 H 1.08995 * 117.50259 * 144.99432 * 26 24 2 46 46 H 1.08999 * 109.47464 * 59.99848 * 28 27 24 47 47 H 1.09003 * 109.46929 * 180.02562 * 28 27 24 48 48 H 1.09005 * 109.47225 * 299.99910 * 28 27 24 49 49 H 1.09003 * 109.46923 * 68.11367 * 29 27 24 50 50 H 1.08991 * 109.47482 * 188.11544 * 29 27 24 51 51 H 1.09000 * 109.47028 * 308.11830 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 1 3.1082 3.4967 -0.5905 8 6 1.3202 4.6982 -0.6111 9 6 1.0594 4.3808 -2.0849 10 6 0.1948 5.4590 -2.6856 11 1 -0.1353 6.2881 -2.0772 12 6 -0.1741 5.3878 -4.0122 13 7 0.2282 4.3785 -4.7533 14 14 -1.2452 6.7247 -4.7569 15 1 -1.5596 7.7414 -3.7213 16 1 -0.5205 7.3709 -5.8806 17 1 -2.5066 6.1249 -5.2613 18 6 2.5560 3.9769 1.4141 19 6 3.7935 4.5269 1.6914 20 6 4.1226 4.8692 2.9896 21 6 3.2161 4.6567 4.0114 22 6 1.9766 4.1115 3.7334 23 6 1.6472 3.7700 2.4350 24 6 2.1975 -1.2688 0.0006 25 1 3.1626 -1.2546 -0.5060 26 6 1.3775 -2.5580 -0.0777 27 6 2.0595 -2.1636 1.2339 28 6 3.2869 -2.9703 1.6622 29 6 1.1676 -1.6648 2.3724 30 1 -0.3633 -0.0086 -1.0277 31 1 -0.3633 -0.8857 0.5211 32 1 -0.3633 0.8942 0.5064 33 1 0.4950 2.3344 -0.0005 34 1 0.3718 4.7442 -0.0759 35 1 1.8296 5.6586 -0.5309 36 1 2.0078 4.3348 -2.6201 37 1 0.5500 3.4204 -2.1651 38 1 -0.0315 4.3282 -5.6865 39 1 4.5036 4.6884 0.8938 40 1 5.0896 5.2986 3.2063 41 1 3.4749 4.9201 5.0263 42 1 1.2668 3.9492 4.5310 43 1 0.6801 3.3409 2.2183 44 1 0.2928 -2.4622 -0.1292 45 1 1.8029 -3.3921 -0.6357 46 1 4.1074 -2.2900 1.8903 47 1 3.0446 -3.5578 2.5478 48 1 3.5831 -3.6383 0.8533 49 1 0.1279 -1.6618 2.0449 50 1 1.2752 -2.3239 3.2338 51 1 1.4640 -0.6532 2.6497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458846166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:22 Heat of formation + Delta-G solvation = 15.851599 kcal Electronic energy + Delta-G solvation = -29001.997513 eV Core-core repulsion = 25287.946212 eV Total energy + Delta-G solvation = -3714.051300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40185 -39.21800 -38.05352 -35.60546 -34.33765 -33.09127 -31.22358 -30.63257 -30.31206 -29.10941 -27.78202 -26.81761 -26.40500 -23.69759 -22.59582 -22.15289 -21.03705 -20.24121 -19.71329 -18.91609 -17.90962 -16.86204 -16.45917 -16.15823 -15.56331 -15.24182 -14.97317 -14.48291 -14.40685 -14.14837 -13.82101 -13.68661 -13.44783 -13.17538 -13.15158 -13.00695 -12.76625 -12.71639 -12.47358 -12.23672 -12.19880 -12.05884 -11.83540 -11.66907 -11.17215 -11.10048 -10.98147 -10.90810 -10.62259 -10.57187 -10.49098 -9.99940 -9.96119 -9.71066 -9.55729 -9.14041 -8.75544 -8.68419 -8.40330 -8.37241 -8.17974 -6.01891 -4.04942 1.57455 1.62133 2.77113 3.28868 3.36966 3.37031 3.40627 3.78994 3.97503 4.23907 4.43856 4.56807 4.65253 4.73431 4.96026 5.00614 5.06670 5.08509 5.17125 5.31918 5.33802 5.35549 5.46379 5.53032 5.61096 5.64148 5.68895 5.70551 5.77168 5.79440 5.82065 5.84498 5.92745 5.93874 6.03622 6.16616 6.20102 6.22806 6.38696 6.55799 6.60397 6.67465 6.70393 6.80829 6.98738 7.02794 7.19006 7.22859 7.65674 7.77259 7.97716 8.23253 8.38781 8.92005 9.02557 9.59450 11.08868 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.003978 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.657973 B = 7037.387370 C = 9466.897597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.713 3.287 4 O -0.588 6.588 5 N -0.725 5.725 6 C 0.199 3.801 7 H 0.093 0.907 8 C -0.112 4.112 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.076 4.076 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.106 4.106 24 C 0.117 3.883 25 H 0.129 0.871 26 C -0.181 4.181 27 C -0.145 4.145 28 C -0.112 4.112 29 C -0.110 4.110 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.259 0.741 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -11.281 16.350 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.415 3.585 4 O -0.465 6.465 5 N -0.380 5.380 6 C 0.094 3.906 7 H 0.111 0.889 8 C -0.150 4.150 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.078 4.078 19 C -0.124 4.124 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.124 4.124 24 C 0.011 3.989 25 H 0.146 0.854 26 C -0.218 4.218 27 C -0.148 4.148 28 C -0.169 4.169 29 C -0.167 4.167 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.648 -11.299 16.143 19.882 hybrid contribution -1.237 0.669 -0.565 1.516 sum 1.411 -10.629 15.578 18.912 Atomic orbital electron populations 1.21879 0.80146 1.02751 1.02380 1.46279 1.05679 1.03823 1.78215 1.15735 0.85234 0.80090 0.77459 1.90882 1.11545 1.86141 1.57961 1.45265 1.09696 1.04137 1.78859 1.19989 0.96844 0.82685 0.91117 0.88869 1.21978 0.97534 0.95754 0.99756 1.19085 0.96986 0.96950 0.88167 1.21271 1.31245 1.08148 0.95322 0.92646 1.25014 0.96283 0.95727 0.97321 1.69985 1.45546 1.30302 1.07332 0.86575 0.80295 0.82098 0.79256 1.19747 1.21032 1.21075 1.20452 0.93859 0.97200 0.96281 1.21032 0.96069 0.98585 0.96714 1.21071 0.99338 1.00540 0.93001 1.21037 0.94387 1.00721 0.98780 1.21047 0.96781 0.99964 0.96473 1.20865 0.99146 0.99937 0.92475 1.21524 0.97122 0.79719 1.00515 0.85390 1.23719 0.99732 0.98132 1.00253 1.22089 0.99232 1.02889 0.90545 1.21327 0.95774 0.98757 1.01038 1.21312 0.97940 1.01108 0.96338 0.92072 0.90685 0.91375 0.76760 0.92680 0.91418 0.96532 0.96348 0.93084 0.86013 0.86431 0.86703 0.86669 0.86734 0.88237 0.88004 0.91979 0.92322 0.92443 0.92506 0.92483 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.08 59.84 0.54 1.33 16 2 N -0.60 -8.50 2.80 -179.67 -0.50 -9.00 16 3 C 0.71 12.55 8.24 -86.91 -0.72 11.83 16 4 O -0.59 -12.40 15.79 5.29 0.08 -12.31 16 5 N -0.72 -12.01 3.64 -59.81 -0.22 -12.23 16 6 C 0.20 3.54 2.17 -69.08 -0.15 3.39 16 7 H 0.09 1.87 7.44 -51.93 -0.39 1.49 16 8 C -0.11 -2.20 4.67 -26.73 -0.12 -2.32 16 9 C 0.03 0.63 4.86 -27.88 -0.14 0.49 16 10 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 C -0.08 -1.23 4.91 -104.63 -0.51 -1.75 16 19 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 16 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 23 C -0.11 -1.53 9.32 -39.58 -0.37 -1.90 16 24 C 0.12 1.50 5.84 -67.93 -0.40 1.10 16 25 H 0.13 1.85 7.79 -51.93 -0.40 1.44 16 26 C -0.18 -1.74 9.09 -26.73 -0.24 -1.98 16 27 C -0.15 -1.51 2.70 -154.51 -0.42 -1.93 16 28 C -0.11 -1.03 9.84 37.15 0.37 -0.67 16 29 C -0.11 -1.07 8.74 37.16 0.32 -0.75 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.65 4.06 -51.93 -0.21 0.44 16 32 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 33 H 0.40 5.91 6.32 -40.82 -0.26 5.65 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.47 7.75 -51.92 -0.40 0.07 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 1.78 8.04 -52.49 -0.42 1.36 16 40 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.11 1.52 7.72 -52.49 -0.41 1.12 16 44 H 0.10 0.87 6.20 -51.92 -0.32 0.55 16 45 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.47 7.86 -51.93 -0.41 0.06 16 48 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 49 H 0.06 0.49 5.94 -51.93 -0.31 0.18 16 50 H 0.06 0.49 7.81 -51.93 -0.41 0.08 16 51 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -32.87 408.51 -11.02 -43.90 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -8.44 Total: 7.24 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.82 Total: -14.32 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.02 Total: -46.97 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.87 -11.02 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.747 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds