Wall clock time and date at job start Tue Mar 31 2020 16:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00094 * 2 1 4 4 O 1.21588 * 119.99860 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99868 * 359.97438 * 3 2 1 6 6 C 1.46498 * 119.99976 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47214 * 35.00414 * 6 5 3 8 8 C 1.52997 * 109.46964 * 155.00496 * 6 5 3 9 9 C 1.53001 * 109.47178 * 294.99863 * 8 6 5 10 10 C 1.50695 * 109.47261 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00311 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00336 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99843 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00294 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47378 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46883 * 120.00785 * 14 12 10 17 17 H 1.48500 * 109.47501 * 240.00571 * 14 12 10 18 18 C 1.50700 * 109.47272 * 275.00357 * 6 5 3 19 19 C 1.38230 * 119.99998 * 139.99781 * 18 6 5 20 20 C 1.38232 * 120.00144 * 180.02562 * 19 18 6 21 21 C 1.38237 * 120.00075 * 0.25542 * 20 19 18 22 22 C 1.38238 * 119.99686 * 359.48944 * 21 20 19 23 23 C 1.38236 * 119.99949 * 319.98112 * 18 6 5 24 24 C 1.46508 * 120.00198 * 179.97438 * 2 1 3 25 25 H 1.09001 * 115.54779 * 148.99526 * 24 2 1 26 26 C 1.52997 * 117.49725 * 3.33105 * 24 2 1 27 27 C 1.53000 * 117.49823 * 294.70688 * 24 2 1 28 28 C 1.52994 * 117.49677 * 214.97796 * 27 24 2 29 29 C 1.52997 * 117.50062 * 359.97438 * 27 24 2 30 30 H 1.09003 * 109.46616 * 90.47710 * 1 2 3 31 31 H 1.08997 * 109.46892 * 210.47113 * 1 2 3 32 32 H 1.08995 * 109.47259 * 330.47830 * 1 2 3 33 33 H 0.97001 * 119.99740 * 0.02562 * 5 3 2 34 34 H 1.08995 * 109.47138 * 55.00164 * 8 6 5 35 35 H 1.09007 * 109.47089 * 175.00064 * 8 6 5 36 36 H 1.08995 * 109.47332 * 300.00183 * 9 8 6 37 37 H 1.09007 * 109.46946 * 60.00113 * 9 8 6 38 38 H 0.96999 * 120.00010 * 179.97438 * 13 12 10 39 39 H 1.08002 * 120.00210 * 359.97438 * 19 18 6 40 40 H 1.08007 * 120.00139 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.00016 * 179.72694 * 21 20 19 42 42 H 1.07994 * 119.99995 * 180.25056 * 22 21 20 43 43 H 1.07997 * 120.00093 * 359.97438 * 23 18 6 44 44 H 1.09009 * 117.49622 * 359.97438 * 26 24 2 45 45 H 1.08995 * 117.50259 * 144.99432 * 26 24 2 46 46 H 1.08999 * 109.47464 * 59.99848 * 28 27 24 47 47 H 1.09003 * 109.46929 * 180.02562 * 28 27 24 48 48 H 1.09005 * 109.47225 * 299.99910 * 28 27 24 49 49 H 1.09003 * 109.46923 * 68.11367 * 29 27 24 50 50 H 1.08991 * 109.47482 * 188.11544 * 29 27 24 51 51 H 1.09000 * 109.47028 * 308.11830 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 1 3.1082 3.4967 -0.5905 8 6 1.3202 4.6982 -0.6111 9 6 1.0594 4.3808 -2.0849 10 6 0.1948 5.4590 -2.6856 11 1 -0.1353 6.2881 -2.0772 12 6 -0.1741 5.3878 -4.0122 13 7 0.2282 4.3785 -4.7533 14 14 -1.2452 6.7247 -4.7569 15 1 -1.5596 7.7414 -3.7213 16 1 -0.5205 7.3709 -5.8806 17 1 -2.5066 6.1249 -5.2613 18 6 2.5560 3.9769 1.4141 19 6 3.7935 4.5269 1.6914 20 6 4.1226 4.8692 2.9896 21 6 3.2161 4.6567 4.0114 22 6 1.9766 4.1115 3.7334 23 6 1.6472 3.7700 2.4350 24 6 2.1975 -1.2688 0.0006 25 1 3.1626 -1.2546 -0.5060 26 6 1.3775 -2.5580 -0.0777 27 6 2.0595 -2.1636 1.2339 28 6 3.2869 -2.9703 1.6622 29 6 1.1676 -1.6648 2.3724 30 1 -0.3633 -0.0086 -1.0277 31 1 -0.3633 -0.8857 0.5211 32 1 -0.3633 0.8942 0.5064 33 1 0.4950 2.3344 -0.0005 34 1 0.3718 4.7442 -0.0759 35 1 1.8296 5.6586 -0.5309 36 1 2.0078 4.3348 -2.6201 37 1 0.5500 3.4204 -2.1651 38 1 -0.0315 4.3282 -5.6865 39 1 4.5036 4.6884 0.8938 40 1 5.0896 5.2986 3.2063 41 1 3.4749 4.9201 5.0263 42 1 1.2668 3.9492 4.5310 43 1 0.6801 3.3409 2.2183 44 1 0.2928 -2.4622 -0.1292 45 1 1.8029 -3.3921 -0.6357 46 1 4.1074 -2.2900 1.8903 47 1 3.0446 -3.5578 2.5478 48 1 3.5831 -3.6383 0.8533 49 1 0.1279 -1.6618 2.0449 50 1 1.2752 -2.3239 3.2338 51 1 1.4640 -0.6532 2.6497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458846166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:22 Heat of formation + Delta-G solvation = -0.760377 kcal Electronic energy + Delta-G solvation = -29002.717862 eV Core-core repulsion = 25287.946212 eV Total energy + Delta-G solvation = -3714.771649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63521 -40.29520 -39.15058 -37.10607 -35.55789 -35.03136 -32.69286 -31.84879 -31.66914 -29.96734 -28.66096 -28.11744 -27.71977 -25.40733 -23.69261 -23.24792 -22.60652 -21.53087 -20.92679 -19.95155 -19.13217 -18.53152 -17.84007 -17.53919 -16.70780 -16.50910 -16.44175 -16.00881 -15.44591 -15.33519 -15.01465 -14.72221 -14.67432 -14.53085 -14.24834 -14.20166 -13.99215 -13.89647 -13.76500 -13.51664 -13.37278 -13.05239 -13.02271 -12.88505 -12.60103 -12.53137 -12.43099 -12.13706 -11.97384 -11.91517 -11.74881 -11.50978 -11.41908 -11.22136 -11.19166 -10.82394 -10.56360 -10.16322 -9.77010 -9.57364 -9.25433 -8.18759 -6.30233 0.47156 0.54819 1.39859 1.41194 1.53858 1.59283 2.09914 2.41177 2.80855 2.87480 3.05260 3.14659 3.65268 3.82464 3.84211 3.90370 3.97821 4.11519 4.16537 4.19575 4.23504 4.30947 4.35498 4.48376 4.63462 4.65757 4.67273 4.72117 4.76572 4.79364 4.90375 4.94334 4.98369 5.04380 5.05796 5.06560 5.09489 5.18124 5.18957 5.27129 5.43100 5.44934 5.51153 5.52425 5.60937 5.63641 5.67822 5.83376 5.84876 5.96395 6.15971 6.23808 6.86604 6.96371 7.39302 7.57226 8.92668 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.003978 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.657973 B = 7037.387370 C = 9466.897597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.705 3.295 4 O -0.633 6.633 5 N -0.719 5.719 6 C 0.211 3.789 7 H 0.057 0.943 8 C -0.093 4.093 9 C 0.034 3.966 10 C -0.538 4.538 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.260 1.260 16 H -0.283 1.283 17 H -0.277 1.277 18 C -0.097 4.097 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.115 4.115 24 C 0.075 3.925 25 H 0.099 0.901 26 C -0.153 4.153 27 C -0.138 4.138 28 C -0.112 4.112 29 C -0.108 4.108 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.066 0.934 36 H -0.023 1.023 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.043 0.957 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -11.533 18.870 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.406 3.594 4 O -0.514 6.514 5 N -0.375 5.375 6 C 0.105 3.895 7 H 0.075 0.925 8 C -0.131 4.131 9 C -0.003 4.003 10 C -0.576 4.576 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.788 3.212 15 H -0.184 1.184 16 H -0.209 1.209 17 H -0.203 1.203 18 C -0.098 4.098 19 C -0.148 4.148 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.030 4.030 25 H 0.117 0.883 26 C -0.191 4.191 27 C -0.140 4.140 28 C -0.169 4.169 29 C -0.165 4.165 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.084 0.916 36 H -0.005 1.005 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.511 -11.571 18.680 21.979 hybrid contribution -0.525 0.696 -1.327 1.588 sum -0.014 -10.875 17.353 20.479 Atomic orbital electron populations 1.22095 0.78076 1.04662 1.02701 1.46294 1.06906 1.03084 1.76975 1.15974 0.84886 0.81091 0.77425 1.90836 1.13621 1.86902 1.60062 1.45122 1.09938 1.03675 1.78744 1.19600 0.94966 0.82621 0.92299 0.92480 1.21707 0.98667 0.96325 0.96435 1.18917 0.94402 0.95827 0.91163 1.21694 1.31328 1.08727 0.95897 0.91925 1.25949 0.97696 0.98101 0.97906 1.70128 1.46981 1.32435 1.07729 0.85432 0.78316 0.79130 0.78361 1.18405 1.20893 1.20272 1.20275 0.95085 0.99135 0.95320 1.21169 0.96004 0.99748 0.97922 1.21375 1.00687 0.99995 0.92149 1.21477 0.93770 0.99183 1.00059 1.21427 0.97582 0.98788 0.96347 1.21033 0.99206 1.00143 0.92926 1.21608 0.97302 0.80443 1.03640 0.88271 1.23819 1.00229 0.95915 0.99101 1.22202 0.99816 1.01400 0.90567 1.21355 0.94774 0.98572 1.02214 1.21316 0.98441 1.00088 0.96610 0.92527 0.87775 0.90484 0.75792 0.91053 0.91582 1.00476 0.97982 0.92950 0.86940 0.84103 0.83348 0.83631 0.85860 0.86669 0.86507 0.93754 0.90457 0.91522 0.91034 0.90855 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 9.08 127.77 1.16 2.56 16 2 N -0.60 -17.31 2.80 -840.61 -2.35 -19.66 16 3 C 0.70 26.36 8.24 179.05 1.48 27.83 16 4 O -0.63 -28.94 15.79 -3.99 -0.06 -29.00 16 5 N -0.72 -25.14 3.64 -461.42 -1.68 -26.82 16 6 C 0.21 8.02 2.17 44.24 0.10 8.11 16 7 H 0.06 2.56 7.44 -2.39 -0.02 2.54 16 8 C -0.09 -3.81 4.67 30.59 0.14 -3.67 16 9 C 0.03 1.78 4.86 29.85 0.15 1.92 16 10 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 11 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 14 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.10 -3.21 4.91 -19.87 -0.10 -3.31 16 19 C -0.13 -4.11 9.67 22.27 0.22 -3.90 16 20 C -0.12 -3.15 10.05 22.27 0.22 -2.93 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 22 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 23 C -0.11 -3.22 9.32 22.27 0.21 -3.02 16 24 C 0.08 1.97 5.84 44.99 0.26 2.24 16 25 H 0.10 3.13 7.79 -2.39 -0.02 3.11 16 26 C -0.15 -2.66 9.09 30.59 0.28 -2.39 16 27 C -0.14 -2.70 2.70 -52.18 -0.14 -2.84 16 28 C -0.11 -1.96 9.84 71.98 0.71 -1.25 16 29 C -0.11 -1.88 8.74 71.98 0.63 -1.25 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.55 4.06 -2.39 -0.01 1.54 16 32 H 0.08 1.47 6.34 -2.39 -0.02 1.46 16 33 H 0.40 12.41 6.32 -92.71 -0.59 11.83 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 36 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 37 H 0.00 0.10 7.75 -2.38 -0.02 0.08 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.11 3.61 8.04 -2.91 -0.02 3.58 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.12 3.13 7.72 -2.91 -0.02 3.11 16 44 H 0.12 1.66 6.20 -2.38 -0.01 1.64 16 45 H 0.12 1.70 8.05 -2.39 -0.02 1.69 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 1.07 7.86 -2.39 -0.02 1.05 16 48 H 0.07 1.02 7.90 -2.38 -0.02 1.01 16 49 H 0.07 1.01 5.94 -2.39 -0.01 1.00 16 50 H 0.07 1.05 7.81 -2.39 -0.02 1.03 16 51 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -75.13 408.51 4.99 -70.14 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.32 Total: 32.44 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 6.45 Total: -16.48 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.74 Total: -103.06 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.06 Total: -29.00 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.13 4.99 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458846166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.377 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds